Wall clock time and date at job start Mon Mar 30 2020 04:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86806 * 119.99722 * 2 1 4 4 H 1.48499 * 109.46906 * 269.99676 * 3 2 1 5 5 H 1.48498 * 109.47298 * 29.99748 * 3 2 1 6 6 H 1.48505 * 109.47050 * 150.00000 * 3 2 1 7 7 C 1.38652 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99817 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00286 * 180.02562 * 7 2 1 10 10 C 1.35746 * 117.00307 * 185.05811 * 9 7 2 11 11 C 1.38904 * 120.06836 * 354.48539 * 10 9 7 12 12 C 1.38077 * 119.93083 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.06796 * 359.74411 * 12 11 10 14 14 C 1.38275 * 120.14113 * 0.51581 * 13 12 11 15 15 C 1.50698 * 119.96661 * 179.76291 * 14 13 12 16 16 N 1.46903 * 109.47212 * 269.72012 * 15 14 13 17 17 C 1.46897 * 111.00060 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47165 * 179.97438 * 17 16 15 19 19 H 1.09009 * 109.46849 * 60.00129 * 18 17 16 20 20 O 1.42896 * 109.47342 * 300.00358 * 18 17 16 21 21 C 1.52998 * 109.47173 * 179.97438 * 18 17 16 22 22 O 1.42902 * 109.47228 * 185.00121 * 21 18 17 23 23 C 1.38121 * 120.06570 * 359.48525 * 14 13 12 24 24 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.03058 * 0.02562 * 11 10 9 26 26 H 1.08006 * 119.96286 * 180.02562 * 12 11 10 27 27 H 1.08005 * 119.93053 * 180.27601 * 13 12 11 28 28 H 1.08997 * 109.47308 * 29.72274 * 15 14 13 29 29 H 1.09003 * 109.47279 * 149.71988 * 15 14 13 30 30 H 1.00896 * 110.99922 * 303.95364 * 16 15 14 31 31 H 1.08998 * 109.47262 * 300.00165 * 17 16 15 32 32 H 1.09001 * 109.47275 * 59.99988 * 17 16 15 33 33 H 0.96701 * 114.00089 * 299.99783 * 20 18 17 34 34 H 1.08997 * 109.47750 * 305.00222 * 21 18 17 35 35 H 1.09007 * 109.47128 * 65.00474 * 21 18 17 36 36 H 0.96702 * 114.00453 * 180.02562 * 22 21 18 37 37 H 1.08004 * 120.03312 * 180.23431 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6528 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3572 -1.2007 0.0011 10 6 3.9736 -2.4055 -0.1051 11 6 3.2235 -3.5745 -0.0926 12 6 3.8533 -4.7984 -0.2013 13 6 5.2293 -4.8609 -0.3278 14 6 5.9793 -3.6993 -0.3351 15 6 7.4787 -3.7722 -0.4678 16 7 8.0849 -3.8570 0.8676 17 6 9.5493 -3.9304 0.7773 18 6 10.1433 -4.0168 2.1846 19 1 9.7650 -4.9085 2.6846 20 8 9.7697 -2.8572 2.9314 21 6 11.6685 -4.0939 2.0906 22 8 12.2168 -4.2915 3.3953 23 6 5.3552 -2.4719 -0.2268 24 1 -0.4850 0.8400 -0.0004 25 1 2.1486 -3.5261 0.0012 26 1 3.2706 -5.7077 -0.1920 27 1 5.7193 -5.8193 -0.4171 28 1 7.7498 -4.6551 -1.0466 29 1 7.8424 -2.8790 -0.9758 30 1 7.7964 -3.0820 1.4456 31 1 9.8343 -4.8146 0.2073 32 1 9.9277 -3.0386 0.2777 33 1 10.0737 -2.0250 2.5440 34 1 11.9513 -4.9273 1.4476 35 1 12.0541 -3.1644 1.6714 36 1 13.1820 -4.3495 3.4117 37 1 5.9412 -1.5647 -0.2364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090282669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:47 Heat of formation + Delta-G solvation = -131.265878 kcal Electronic energy + Delta-G solvation = -19452.268519 eV Core-core repulsion = 16194.039629 eV Total energy + Delta-G solvation = -3258.228890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92152 -39.50789 -38.58608 -37.03180 -35.96177 -34.45886 -32.59533 -31.12005 -30.39148 -27.39779 -26.72536 -24.47837 -23.20755 -22.58986 -22.06596 -19.65980 -19.00088 -18.34645 -17.54581 -17.31889 -16.85885 -16.65735 -16.16760 -15.87841 -15.69126 -15.51554 -15.25155 -14.50860 -14.47437 -14.31294 -14.16481 -13.85500 -13.64717 -13.19038 -12.98662 -12.74701 -12.47912 -12.42270 -12.22897 -11.93173 -11.77231 -11.31504 -11.06111 -10.92166 -10.89838 -9.77021 -9.33099 -9.06713 -8.50390 -6.23394 0.48158 0.70183 1.30366 1.34751 1.51195 2.27554 2.68765 2.90657 3.04613 3.18220 3.56609 3.67517 3.92530 4.07761 4.10740 4.16843 4.26111 4.32719 4.41994 4.49847 4.56299 4.60388 4.68366 4.71486 4.75162 4.95989 5.12791 5.25676 5.39701 5.67128 5.75639 5.76441 5.91397 6.03010 6.26068 6.35985 6.82696 6.83967 6.91395 7.58517 8.61476 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.003662 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.344133 B = 7643.871510 C = 8469.053498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.400 4.400 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.239 4.239 12 C -0.079 4.079 13 C -0.162 4.162 14 C -0.042 4.042 15 C 0.112 3.888 16 N -0.692 5.692 17 C 0.036 3.964 18 C 0.106 3.894 19 H 0.088 0.912 20 O -0.575 6.575 21 C 0.049 3.951 22 O -0.593 6.593 23 C -0.184 4.184 24 H 0.285 0.715 25 H 0.106 0.894 26 H 0.139 0.861 27 H 0.146 0.854 28 H 0.100 0.900 29 H 0.046 0.954 30 H 0.344 0.656 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.383 0.617 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.141 -8.096 -0.934 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.096 4.096 13 C -0.181 4.181 14 C -0.043 4.043 15 C -0.016 4.016 16 N -0.324 5.324 17 C -0.093 4.093 18 C 0.047 3.953 19 H 0.106 0.894 20 O -0.382 6.382 21 C -0.030 4.030 22 O -0.402 6.402 23 C -0.204 4.204 24 H 0.094 0.906 25 H 0.124 0.876 26 H 0.157 0.843 27 H 0.164 0.836 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.162 0.838 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.232 0.768 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 24.087 -8.873 -0.326 25.671 hybrid contribution 0.243 1.876 -0.658 2.003 sum 24.331 -6.997 -0.985 25.336 Atomic orbital electron populations 1.69731 1.06935 1.29605 1.50308 1.25292 0.95889 1.02194 0.95538 0.85201 0.78748 0.77338 0.79307 1.18925 1.19176 1.18798 1.20707 0.78155 0.96106 1.52633 0.90279 1.83505 1.21172 1.27400 1.83312 1.19603 0.93116 0.85102 0.95179 1.21343 1.00205 0.93466 1.10846 1.21147 0.95529 0.96259 0.96712 1.21006 0.92884 0.98540 1.05637 1.19638 0.96064 0.91378 0.97193 1.20817 0.87966 1.02209 0.90609 1.60359 1.07809 1.51413 1.12833 1.22551 0.87519 1.02927 0.96317 1.21993 0.92478 0.89217 0.91659 0.89388 1.86657 1.80465 1.17043 1.54030 1.22885 0.93510 1.01785 0.84787 1.86513 1.27565 1.96275 1.29797 1.20309 0.90511 0.99007 1.10561 0.90566 0.87573 0.84281 0.83608 0.88137 0.93541 0.83757 0.88265 0.93162 0.76807 0.90646 0.91548 0.75305 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.10 13.96 21.61 0.30 -55.79 16 2 C 0.01 0.53 5.49 84.83 0.47 0.99 16 3 Si 0.97 46.00 28.62 68.60 1.96 47.97 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.40 -24.04 9.95 67.92 0.68 -23.36 16 8 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 9 O -0.25 -13.64 8.59 -22.71 -0.19 -13.83 16 10 C 0.12 5.68 6.65 22.58 0.15 5.83 16 11 C -0.24 -10.81 9.17 22.39 0.21 -10.60 16 12 C -0.08 -2.77 10.04 22.25 0.22 -2.55 16 13 C -0.16 -4.93 9.70 22.30 0.22 -4.72 16 14 C -0.04 -1.30 5.39 -19.88 -0.11 -1.41 16 15 C 0.11 2.44 5.81 85.56 0.50 2.94 16 16 N -0.69 -14.85 6.49 -517.94 -3.36 -18.22 16 17 C 0.04 0.51 5.39 86.30 0.47 0.98 16 18 C 0.11 1.78 3.52 30.59 0.11 1.88 16 19 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 20 O -0.58 -12.06 12.64 -144.37 -1.82 -13.89 16 21 C 0.05 0.55 6.68 71.98 0.48 1.03 16 22 O -0.59 -9.17 13.62 -144.37 -1.97 -11.13 16 23 C -0.18 -7.11 9.65 22.39 0.22 -6.89 16 24 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.11 5.28 5.64 -2.91 -0.02 5.26 16 26 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 27 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 28 H 0.10 1.78 8.08 -2.39 -0.02 1.76 16 29 H 0.05 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.34 8.53 8.11 -89.70 -0.73 7.81 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.38 5.08 9.05 -74.06 -0.67 4.41 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.40 2.14 9.12 -74.06 -0.68 1.46 16 37 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -74.49 319.39 -2.45 -76.93 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.96 Total: 23.85 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 3.60 Total: -35.89 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -3.06 Total: -74.01 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -3.99 Total: -38.85 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.96 Total: 47.97 kcal Total: -74.49 -2.45 -76.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090282669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.333 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds