Wall clock time and date at job start Mon Mar 30 2020 04:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93010 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48125 * 12 11 10 14 14 C 1.38283 * 120.13933 * 359.76809 * 13 12 11 15 15 C 1.50702 * 119.96579 * 179.97438 * 14 13 12 16 16 N 1.46892 * 109.47065 * 270.02155 * 15 14 13 17 17 C 1.46895 * 111.00142 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47561 * 180.02562 * 17 16 15 19 19 H 1.09003 * 109.47123 * 305.00122 * 18 17 16 20 20 O 1.42900 * 109.47209 * 64.99906 * 18 17 16 21 21 C 1.52997 * 109.47291 * 185.00029 * 18 17 16 22 22 O 1.42904 * 109.47489 * 175.00038 * 21 18 17 23 23 C 1.38123 * 120.06577 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07990 * 119.96522 * 180.22917 * 12 11 10 27 27 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 1.00902 * 111.00092 * 303.95585 * 16 15 14 31 31 H 1.09005 * 109.47317 * 300.00577 * 17 16 15 32 32 H 1.09000 * 109.47422 * 59.99787 * 17 16 15 33 33 H 0.96703 * 113.99936 * 60.00365 * 20 18 17 34 34 H 1.09004 * 109.47552 * 294.99637 * 21 18 17 35 35 H 1.09003 * 109.47454 * 54.99754 * 21 18 17 36 36 H 0.96696 * 114.00575 * 180.02562 * 22 21 18 37 37 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5973 0.1977 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 7 1.2708 -7.7902 -0.8707 17 6 0.6011 -9.0946 -0.7813 18 6 0.3797 -9.6519 -2.1889 19 1 -0.1672 -8.9226 -2.7865 20 8 1.6436 -9.9171 -2.8005 21 6 -0.4274 -10.9488 -2.1028 22 8 -0.7341 -11.4075 -3.4210 23 6 1.4365 -4.7345 0.2252 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2810 -4.5475 0.1869 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9004 1.0432 29 1 0.5456 -7.0925 0.9733 30 1 0.7438 -7.1523 -1.4482 31 1 1.2237 -9.7844 -0.2115 32 1 -0.3604 -8.9759 -0.2817 33 1 2.1854 -10.5591 -2.3214 34 1 0.1572 -11.7067 -1.5814 35 1 -1.3532 -10.7652 -1.5575 36 1 -1.2461 -12.2275 -3.4431 37 1 0.3579 -4.7883 0.2365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090282670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:50 Heat of formation + Delta-G solvation = -103.241489 kcal Electronic energy + Delta-G solvation = -19362.637585 eV Core-core repulsion = 16105.623924 eV Total energy + Delta-G solvation = -3257.013661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.12196 -38.56797 -36.95466 -36.14185 -34.90698 -32.27457 -31.34492 -29.62866 -28.85825 -25.97612 -25.15715 -23.42907 -21.88675 -21.55217 -20.59044 -17.87988 -17.55711 -17.09479 -16.70612 -16.35285 -15.27587 -15.09763 -14.89812 -14.47887 -14.33004 -14.11953 -13.62897 -13.60262 -13.28577 -12.96767 -12.54092 -12.48938 -12.05174 -11.81800 -11.55561 -11.25452 -11.02789 -10.80609 -10.70806 -10.60335 -10.46494 -10.41825 -10.07708 -9.32356 -8.82164 -8.43934 -8.04268 -7.20478 -6.42854 -4.02040 2.11240 2.41551 3.14233 3.14961 3.19793 3.57839 3.98364 4.27414 4.36500 4.66740 4.69452 4.89013 4.92226 5.04055 5.07551 5.10864 5.22433 5.30981 5.38269 5.57312 5.77926 5.82859 5.84540 5.99217 6.21338 6.34715 6.67167 6.91692 6.98081 7.09274 7.24346 7.28384 7.40095 7.42169 7.45392 7.61245 7.84743 8.02263 9.03122 9.73525 10.75435 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.030526 B = 0.003243 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.031259 B = 8631.312403 C = 9134.804901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.153 3.847 11 C -0.230 4.230 12 C -0.077 4.077 13 C -0.187 4.187 14 C -0.048 4.048 15 C 0.107 3.893 16 N -0.674 5.674 17 C 0.029 3.971 18 C 0.110 3.890 19 H 0.104 0.896 20 O -0.539 6.539 21 C 0.045 3.955 22 O -0.563 6.563 23 C -0.185 4.185 24 H 0.269 0.731 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.348 0.652 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.369 0.631 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.377 0.623 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -18.911 0.152 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.099 3.901 11 C -0.249 4.249 12 C -0.096 4.096 13 C -0.206 4.206 14 C -0.049 4.049 15 C -0.021 4.021 16 N -0.305 5.305 17 C -0.101 4.101 18 C 0.050 3.950 19 H 0.122 0.878 20 O -0.343 6.343 21 C -0.034 4.034 22 O -0.368 6.368 23 C -0.205 4.205 24 H 0.079 0.921 25 H 0.144 0.856 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.166 0.834 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.216 0.784 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.224 0.776 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.994 -17.988 -0.503 18.022 hybrid contribution -0.575 0.227 0.935 1.121 sum 0.418 -17.761 0.432 17.772 Atomic orbital electron populations 1.70041 1.05945 1.27580 1.46441 1.25277 0.95837 0.98792 0.96626 0.85717 0.78905 0.80129 0.78712 1.19883 1.20290 1.19221 1.21314 0.91781 0.80843 1.52815 0.89121 1.83973 1.34259 1.11388 1.78803 1.19297 0.90267 0.87983 0.92518 1.21203 0.93842 0.99041 1.10844 1.20749 0.98470 0.92396 0.97957 1.20413 0.93450 0.96790 1.09997 1.19130 0.93555 0.92519 0.99696 1.20805 0.98321 0.93295 0.89725 1.60388 1.52745 1.03923 1.13472 1.22568 0.97700 0.93378 0.96424 1.21887 0.84922 0.94559 0.93608 0.87818 1.86688 1.28746 1.65774 1.53046 1.22922 0.98991 0.96825 0.84669 1.86574 1.77186 1.45676 1.27382 1.20019 0.99036 0.90128 1.11332 0.92090 0.85635 0.87461 0.87611 0.90659 0.94719 0.83351 0.90600 0.94379 0.78447 0.93303 0.92826 0.77606 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 8 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 9 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16 10 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.23 -5.11 9.17 -39.39 -0.36 -5.47 16 12 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 13 C -0.19 -3.34 9.70 -39.53 -0.38 -3.72 16 14 C -0.05 -0.87 5.39 -104.65 -0.56 -1.43 16 15 C 0.11 1.49 5.81 -4.98 -0.03 1.46 16 16 N -0.67 -8.87 6.44 -115.07 -0.74 -9.61 16 17 C 0.03 0.28 5.32 -3.83 -0.02 0.26 16 18 C 0.11 1.12 3.43 -26.73 -0.09 1.03 16 19 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 20 O -0.54 -6.51 13.25 -40.08 -0.53 -7.04 16 21 C 0.04 0.34 6.68 37.16 0.25 0.59 16 22 O -0.56 -5.21 13.62 -40.08 -0.55 -5.76 16 23 C -0.19 -3.93 9.65 -39.40 -0.38 -4.31 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 26 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 28 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.35 4.89 8.72 -39.29 -0.34 4.55 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.37 3.05 9.05 45.56 0.41 3.46 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.38 1.61 9.12 45.56 0.42 2.02 16 37 H 0.11 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -33.99 321.52 -6.72 -40.71 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -3.44 Total: 10.93 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -2.04 Total: -19.76 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.02 Total: -34.42 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -1.08 Total: -18.01 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.99 -6.72 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090282670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.533 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds