Wall clock time and date at job start Mon Mar 30 2020 04:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93010 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48125 * 12 11 10 14 14 C 1.38283 * 120.13933 * 359.76809 * 13 12 11 15 15 C 1.50702 * 119.96579 * 179.97438 * 14 13 12 16 16 N 1.46892 * 109.47065 * 270.02155 * 15 14 13 17 17 C 1.46895 * 111.00142 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47561 * 180.02562 * 17 16 15 19 19 H 1.09003 * 109.47123 * 305.00122 * 18 17 16 20 20 O 1.42900 * 109.47209 * 64.99906 * 18 17 16 21 21 C 1.52997 * 109.47291 * 185.00029 * 18 17 16 22 22 O 1.42904 * 109.47489 * 175.00038 * 21 18 17 23 23 C 1.38123 * 120.06577 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07990 * 119.96522 * 180.22917 * 12 11 10 27 27 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 1.00902 * 111.00092 * 303.95585 * 16 15 14 31 31 H 1.09005 * 109.47317 * 300.00577 * 17 16 15 32 32 H 1.09000 * 109.47422 * 59.99787 * 17 16 15 33 33 H 0.96703 * 113.99936 * 60.00365 * 20 18 17 34 34 H 1.09004 * 109.47552 * 294.99637 * 21 18 17 35 35 H 1.09003 * 109.47454 * 54.99754 * 21 18 17 36 36 H 0.96696 * 114.00575 * 180.02562 * 22 21 18 37 37 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5973 0.1977 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 7 1.2708 -7.7902 -0.8707 17 6 0.6011 -9.0946 -0.7813 18 6 0.3797 -9.6519 -2.1889 19 1 -0.1672 -8.9226 -2.7865 20 8 1.6436 -9.9171 -2.8005 21 6 -0.4274 -10.9488 -2.1028 22 8 -0.7341 -11.4075 -3.4210 23 6 1.4365 -4.7345 0.2252 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2810 -4.5475 0.1869 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9004 1.0432 29 1 0.5456 -7.0925 0.9733 30 1 0.7438 -7.1523 -1.4482 31 1 1.2237 -9.7844 -0.2115 32 1 -0.3604 -8.9759 -0.2817 33 1 2.1854 -10.5591 -2.3214 34 1 0.1572 -11.7067 -1.5814 35 1 -1.3532 -10.7652 -1.5575 36 1 -1.2461 -12.2275 -3.4431 37 1 0.3579 -4.7883 0.2365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090282670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:50 Heat of formation + Delta-G solvation = -133.057631 kcal Electronic energy + Delta-G solvation = -19363.930510 eV Core-core repulsion = 16105.623924 eV Total energy + Delta-G solvation = -3258.306586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80228 -39.42711 -38.48816 -36.99234 -35.99814 -34.29025 -32.57510 -30.96537 -30.25659 -27.50180 -26.70392 -24.46251 -23.17476 -22.69014 -22.16574 -19.51961 -18.86570 -18.33112 -17.66472 -17.11485 -16.74223 -16.51158 -16.13149 -15.93091 -15.64946 -15.48423 -15.33402 -14.75346 -14.25499 -14.21089 -13.99507 -13.63702 -13.55392 -13.17512 -12.93863 -12.71748 -12.44072 -12.27404 -12.21544 -12.07316 -11.77807 -11.20595 -11.03983 -10.85903 -10.80077 -9.73837 -9.31973 -8.97632 -8.47266 -6.15661 0.51975 0.76502 1.34544 1.44018 1.52154 2.17652 2.72576 2.94912 3.19788 3.44902 3.58814 3.68141 3.95460 4.05850 4.11721 4.18004 4.26296 4.34234 4.41968 4.50544 4.55632 4.63068 4.69803 4.70110 4.75696 5.05740 5.09078 5.13612 5.31993 5.65848 5.73953 5.79790 6.00580 6.03171 6.24876 6.29368 6.88498 6.97089 6.97694 7.78909 8.76183 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.030526 B = 0.003243 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.031259 B = 8631.312403 C = 9134.804901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.245 4.245 12 C -0.074 4.074 13 C -0.170 4.170 14 C -0.040 4.040 15 C 0.112 3.888 16 N -0.686 5.686 17 C 0.035 3.965 18 C 0.108 3.892 19 H 0.078 0.922 20 O -0.566 6.566 21 C 0.049 3.951 22 O -0.593 6.593 23 C -0.197 4.197 24 H 0.272 0.728 25 H 0.117 0.883 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.337 0.663 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.384 0.616 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -21.379 0.894 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.062 3.938 11 C -0.264 4.264 12 C -0.092 4.092 13 C -0.189 4.189 14 C -0.040 4.040 15 C -0.016 4.016 16 N -0.316 5.316 17 C -0.094 4.094 18 C 0.048 3.952 19 H 0.096 0.904 20 O -0.373 6.373 21 C -0.030 4.030 22 O -0.401 6.401 23 C -0.217 4.217 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.162 0.838 27 H 0.163 0.837 28 H 0.120 0.880 29 H 0.058 0.942 30 H 0.155 0.845 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.233 0.767 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.247 0.753 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.915 -20.542 0.250 20.750 hybrid contribution -1.082 0.625 0.697 1.430 sum 1.833 -19.918 0.947 20.024 Atomic orbital electron populations 1.70188 1.08014 1.28747 1.49096 1.26590 0.96867 1.02719 0.95903 0.84586 0.77813 0.74561 0.79245 1.18851 1.19505 1.17658 1.21813 0.92489 0.81494 1.53170 0.88224 1.83933 1.35911 1.12556 1.81730 1.19880 0.91617 0.87913 0.94413 1.21318 0.93168 1.00243 1.11706 1.21168 1.00253 0.91481 0.96319 1.20962 0.93570 0.97765 1.06568 1.19606 0.93997 0.93299 0.97115 1.20813 0.98750 0.91416 0.90624 1.60411 1.53598 1.04988 1.12637 1.22601 0.98544 0.91772 0.96499 1.21884 0.84560 0.95520 0.93215 0.90422 1.86638 1.29784 1.66606 1.54255 1.22892 0.99647 0.96033 0.84406 1.86512 1.77866 1.47231 1.28524 1.20257 0.99292 0.90388 1.11735 0.91872 0.86510 0.83790 0.83710 0.87977 0.94195 0.84529 0.88356 0.93053 0.76698 0.90876 0.91276 0.75286 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.39 13.67 21.61 0.30 -57.10 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.55 29.55 68.60 2.03 45.57 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.41 -24.58 9.49 67.92 0.64 -23.94 16 8 H 0.10 5.46 5.21 -2.91 -0.02 5.44 16 9 O -0.23 -14.42 9.76 -22.74 -0.22 -14.64 16 10 C 0.11 5.70 6.65 22.58 0.15 5.85 16 11 C -0.24 -10.98 9.17 22.39 0.21 -10.78 16 12 C -0.07 -2.62 10.04 22.25 0.22 -2.40 16 13 C -0.17 -5.43 9.70 22.30 0.22 -5.21 16 14 C -0.04 -1.34 5.39 -19.88 -0.11 -1.45 16 15 C 0.11 2.77 5.81 85.56 0.50 3.27 16 16 N -0.69 -16.40 6.44 -517.96 -3.34 -19.74 16 17 C 0.04 0.57 5.32 86.30 0.46 1.03 16 18 C 0.11 2.01 3.43 30.59 0.10 2.11 16 19 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 20 O -0.57 -12.70 13.25 -144.34 -1.91 -14.61 16 21 C 0.05 0.62 6.68 71.98 0.48 1.10 16 22 O -0.59 -9.95 13.62 -144.34 -1.97 -11.92 16 23 C -0.20 -8.51 9.65 22.39 0.22 -8.30 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 25 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 26 H 0.14 4.01 8.06 -2.92 -0.02 3.98 16 27 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 28 H 0.10 2.04 8.08 -2.39 -0.02 2.02 16 29 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 30 H 0.34 9.24 8.72 -89.69 -0.78 8.46 16 31 H 0.10 1.20 8.14 -2.38 -0.02 1.19 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.38 5.39 9.05 -74.06 -0.67 4.72 16 34 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.40 2.61 9.12 -74.06 -0.68 1.93 16 37 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -78.57 321.52 -2.57 -81.15 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -1.02 Total: 30.88 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 3.56 Total: -39.60 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -3.04 Total: -76.84 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -4.10 Total: -41.17 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -78.57 -2.57 -81.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090282670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.912 kcal (2) G-P(sol) polarization free energy of solvation -78.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds