Wall clock time and date at job start Mon Mar 30 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47427 * 2 1 4 4 N 1.30174 * 126.80543 * 309.93519 * 3 2 1 5 5 O 1.20898 * 111.74370 * 180.31358 * 4 3 2 6 6 C 1.34287 * 111.62695 * 359.70239 * 5 4 3 7 7 C 1.50695 * 126.82256 * 180.02562 * 6 5 4 8 8 C 1.35858 * 106.35968 * 359.97438 * 6 5 4 9 9 N 1.40776 * 128.05987 * 179.97438 * 8 6 5 10 10 C 1.34780 * 119.99738 * 108.81108 * 9 8 6 11 11 O 1.21601 * 119.99896 * 355.17214 * 10 9 8 12 12 N 1.34780 * 119.99856 * 175.45526 * 10 9 8 13 13 C 1.46500 * 119.99906 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47041 * 35.00047 * 13 12 10 15 15 C 1.52997 * 109.47197 * 275.00210 * 13 12 10 16 16 C 1.50701 * 109.47161 * 155.00046 * 13 12 10 17 17 H 1.07997 * 119.99535 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99887 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00088 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99970 * 180.02562 * 18 16 13 21 21 H 1.48506 * 109.47095 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47743 * 119.99841 * 20 18 16 23 23 H 1.48501 * 109.47165 * 239.99811 * 20 18 16 24 24 H 1.09000 * 109.47548 * 307.46628 * 1 2 3 25 25 H 1.09007 * 109.46883 * 67.46117 * 1 2 3 26 26 H 1.08997 * 109.47256 * 187.46214 * 1 2 3 27 27 H 1.09000 * 109.47357 * 239.98789 * 2 1 3 28 28 H 1.09008 * 109.46481 * 119.99490 * 2 1 3 29 29 H 1.09006 * 109.47353 * 263.25409 * 7 6 5 30 30 H 1.09000 * 109.47387 * 23.25171 * 7 6 5 31 31 H 1.09005 * 109.47603 * 143.25760 * 7 6 5 32 32 H 0.96998 * 120.00657 * 288.81109 * 9 8 6 33 33 H 0.97002 * 120.00080 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.46992 * 299.99866 * 15 13 12 35 35 H 1.08996 * 109.47728 * 59.99853 * 15 13 12 36 36 H 1.09000 * 109.47655 * 179.97438 * 15 13 12 37 37 H 0.97006 * 119.99895 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 1.6616 2.3790 -0.7992 5 8 2.2454 3.4109 -0.5622 6 6 3.1029 3.2705 0.4616 7 6 4.0004 4.3338 1.0402 8 6 2.9997 1.9798 0.8729 9 7 3.6966 1.3436 1.9176 10 6 3.0507 1.0075 3.0518 11 8 1.8892 1.3314 3.2088 12 7 3.6939 0.3173 4.0143 13 6 2.9920 -0.0476 5.2474 14 1 1.9488 -0.2676 5.0202 15 6 3.0636 1.1158 6.2384 16 6 3.6415 -1.2647 5.8538 17 1 4.4918 -1.7211 5.3690 18 6 3.1495 -1.7963 7.0270 19 7 2.1138 -1.2408 7.6171 20 14 3.9551 -3.3045 7.7791 21 1 5.0936 -3.7340 6.9278 22 1 4.4505 -2.9747 9.1396 23 1 2.9612 -4.4044 7.8674 24 1 -0.3634 0.6251 0.8156 25 1 -0.3633 0.3939 -0.9492 26 1 -0.3633 -1.0189 0.1335 27 1 1.8934 -0.5140 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 4.9963 4.2443 0.6062 30 1 3.5917 5.3181 0.8118 31 1 4.0626 4.2081 2.1212 32 1 4.6416 1.1471 1.8213 33 1 4.6217 0.0627 3.8910 34 1 4.1067 1.3359 6.4656 35 1 2.5938 1.9962 5.7999 36 1 2.5410 0.8446 7.1557 37 1 1.7679 -1.6146 8.4428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120227817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:42 Heat of formation + Delta-G solvation = 18.750619 kcal Electronic energy + Delta-G solvation = -20598.681928 eV Core-core repulsion = 17379.250993 eV Total energy + Delta-G solvation = -3219.430935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.80704 -39.42869 -35.99016 -34.77201 -34.31317 -32.64513 -31.96923 -30.87965 -28.75316 -27.44481 -25.27818 -24.32454 -23.01757 -21.16694 -19.98472 -19.72894 -18.33226 -17.63360 -17.34969 -16.21005 -15.67421 -14.99947 -14.79275 -14.26950 -13.97647 -13.88717 -13.66542 -13.30763 -13.27705 -12.66521 -12.42016 -12.26340 -11.83806 -11.52087 -11.41693 -11.11138 -11.02800 -10.92691 -10.74999 -10.32550 -10.26255 -9.89073 -9.55569 -9.36509 -9.05779 -8.77284 -8.58461 -7.92106 -6.14952 -4.24158 1.47213 2.24182 2.85317 3.21960 3.29818 3.32091 3.45383 3.78725 4.28157 4.34706 4.49492 4.95653 5.10377 5.18036 5.21601 5.30353 5.33056 5.41911 5.51118 5.63924 5.84896 5.93677 6.01826 6.22121 6.37389 6.75799 6.84769 6.95306 7.07330 7.18542 7.44468 7.60189 7.80781 7.97642 8.13120 8.34264 8.71598 8.84493 9.25033 9.45049 10.91173 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.004672 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.478019 B = 5991.155325 C = 6501.249919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C 0.036 3.964 4 N -0.362 5.362 5 O 0.097 5.903 6 C -0.042 4.042 7 C -0.068 4.068 8 C 0.062 3.938 9 N -0.676 5.676 10 C 0.696 3.304 11 O -0.582 6.582 12 N -0.720 5.720 13 C 0.281 3.719 14 H 0.049 0.951 15 C -0.148 4.148 16 C -0.533 4.533 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.403 0.597 33 H 0.386 0.614 34 H 0.026 0.974 35 H 0.015 0.985 36 H 0.090 0.910 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 6.350 -13.084 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 C -0.126 4.126 4 N -0.070 5.070 5 O 0.036 5.964 6 C -0.108 4.108 7 C -0.125 4.125 8 C -0.036 4.036 9 N -0.332 5.332 10 C 0.397 3.603 11 O -0.459 6.459 12 N -0.371 5.371 13 C 0.179 3.821 14 H 0.067 0.933 15 C -0.207 4.207 16 C -0.571 4.571 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.239 0.761 33 H 0.218 0.782 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.109 0.891 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.371 6.679 -13.692 15.602 hybrid contribution 1.759 -1.273 1.049 2.411 sum 5.130 5.407 -12.643 14.676 Atomic orbital electron populations 1.21666 0.93920 1.02261 1.02292 1.19902 0.96946 0.87865 1.03225 1.23644 0.97425 0.98134 0.93375 1.73762 1.17131 0.93172 1.22913 1.84852 1.40823 1.29494 1.41229 1.24325 0.96878 0.96378 0.93208 1.20274 0.96188 0.94898 1.01157 1.17567 1.00914 0.90711 0.94440 1.41901 1.12147 1.65192 1.14003 1.16155 0.85195 0.79568 0.79404 1.90917 1.15784 1.59539 1.79610 1.45810 1.15300 1.57035 1.18989 1.18677 0.93542 0.92389 0.77452 0.93349 1.22103 0.99154 0.96764 1.02648 1.21233 1.15954 1.11636 1.08295 0.92013 1.24879 0.94881 0.97371 0.96571 1.69917 1.23422 1.40068 1.18617 0.86385 0.79239 0.82370 0.79031 1.19754 1.20871 1.20873 0.92005 0.92545 0.91927 0.90269 0.89584 0.89588 0.89845 0.89102 0.76092 0.78200 0.95505 0.96638 0.89135 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.85 37.16 0.37 -1.69 16 2 C -0.04 -0.61 6.53 -27.89 -0.18 -0.79 16 3 C 0.04 0.57 6.63 -81.94 -0.54 0.03 16 4 N -0.36 -5.78 11.99 33.56 0.40 -5.38 16 5 O 0.10 1.41 11.20 16.52 0.19 1.59 16 6 C -0.04 -0.56 7.51 -35.16 -0.26 -0.82 16 7 C -0.07 -0.61 10.45 36.00 0.38 -0.23 16 8 C 0.06 0.96 6.07 -83.24 -0.50 0.45 16 9 N -0.68 -10.10 5.48 -13.99 -0.08 -10.17 16 10 C 0.70 13.82 8.43 -86.91 -0.73 13.09 16 11 O -0.58 -14.27 15.99 5.28 0.08 -14.18 16 12 N -0.72 -14.47 5.07 -59.81 -0.30 -14.77 16 13 C 0.28 7.02 2.56 -69.08 -0.18 6.85 16 14 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 15 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 16 C -0.53 -13.78 8.73 -34.44 -0.30 -14.08 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -24.57 11.32 55.43 0.63 -23.94 16 20 Si 0.90 20.28 29.54 -169.99 -5.02 15.25 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H 0.06 1.03 8.13 -51.93 -0.42 0.60 16 25 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 1.39 8.08 -51.92 -0.42 0.97 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.40 4.52 8.84 -40.82 -0.36 4.16 16 33 H 0.39 6.52 8.56 -40.82 -0.35 6.18 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -31.99 321.69 -6.15 -38.14 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.18 Total: 7.45 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.71 Total: 1.17 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.65 Total: -54.27 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.27 Total: -12.59 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.99 -6.15 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120227817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.887 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds