Wall clock time and date at job start Mon Mar 30 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47427 * 2 1 4 4 N 1.30174 * 126.80543 * 309.93519 * 3 2 1 5 5 O 1.20898 * 111.74370 * 180.31358 * 4 3 2 6 6 C 1.34287 * 111.62695 * 359.70239 * 5 4 3 7 7 C 1.50695 * 126.82256 * 180.02562 * 6 5 4 8 8 C 1.35858 * 106.35968 * 359.97438 * 6 5 4 9 9 N 1.40776 * 128.05987 * 179.97438 * 8 6 5 10 10 C 1.34780 * 119.99738 * 108.81108 * 9 8 6 11 11 O 1.21601 * 119.99896 * 355.17214 * 10 9 8 12 12 N 1.34780 * 119.99856 * 175.45526 * 10 9 8 13 13 C 1.46500 * 119.99906 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47041 * 35.00047 * 13 12 10 15 15 C 1.52997 * 109.47197 * 275.00210 * 13 12 10 16 16 C 1.50701 * 109.47161 * 155.00046 * 13 12 10 17 17 H 1.07997 * 119.99535 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99887 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00088 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99970 * 180.02562 * 18 16 13 21 21 H 1.48506 * 109.47095 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47743 * 119.99841 * 20 18 16 23 23 H 1.48501 * 109.47165 * 239.99811 * 20 18 16 24 24 H 1.09000 * 109.47548 * 307.46628 * 1 2 3 25 25 H 1.09007 * 109.46883 * 67.46117 * 1 2 3 26 26 H 1.08997 * 109.47256 * 187.46214 * 1 2 3 27 27 H 1.09000 * 109.47357 * 239.98789 * 2 1 3 28 28 H 1.09008 * 109.46481 * 119.99490 * 2 1 3 29 29 H 1.09006 * 109.47353 * 263.25409 * 7 6 5 30 30 H 1.09000 * 109.47387 * 23.25171 * 7 6 5 31 31 H 1.09005 * 109.47603 * 143.25760 * 7 6 5 32 32 H 0.96998 * 120.00657 * 288.81109 * 9 8 6 33 33 H 0.97002 * 120.00080 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.46992 * 299.99866 * 15 13 12 35 35 H 1.08996 * 109.47728 * 59.99853 * 15 13 12 36 36 H 1.09000 * 109.47655 * 179.97438 * 15 13 12 37 37 H 0.97006 * 119.99895 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 1.6616 2.3790 -0.7992 5 8 2.2454 3.4109 -0.5622 6 6 3.1029 3.2705 0.4616 7 6 4.0004 4.3338 1.0402 8 6 2.9997 1.9798 0.8729 9 7 3.6966 1.3436 1.9176 10 6 3.0507 1.0075 3.0518 11 8 1.8892 1.3314 3.2088 12 7 3.6939 0.3173 4.0143 13 6 2.9920 -0.0476 5.2474 14 1 1.9488 -0.2676 5.0202 15 6 3.0636 1.1158 6.2384 16 6 3.6415 -1.2647 5.8538 17 1 4.4918 -1.7211 5.3690 18 6 3.1495 -1.7963 7.0270 19 7 2.1138 -1.2408 7.6171 20 14 3.9551 -3.3045 7.7791 21 1 5.0936 -3.7340 6.9278 22 1 4.4505 -2.9747 9.1396 23 1 2.9612 -4.4044 7.8674 24 1 -0.3634 0.6251 0.8156 25 1 -0.3633 0.3939 -0.9492 26 1 -0.3633 -1.0189 0.1335 27 1 1.8934 -0.5140 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 4.9963 4.2443 0.6062 30 1 3.5917 5.3181 0.8118 31 1 4.0626 4.2081 2.1212 32 1 4.6416 1.1471 1.8213 33 1 4.6217 0.0627 3.8910 34 1 4.1067 1.3359 6.4656 35 1 2.5938 1.9962 5.7999 36 1 2.5410 0.8446 7.1557 37 1 1.7679 -1.6146 8.4428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120227817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:41 Heat of formation + Delta-G solvation = -3.414042 kcal Electronic energy + Delta-G solvation = -20599.643060 eV Core-core repulsion = 17379.250993 eV Total energy + Delta-G solvation = -3220.392067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.97646 -41.02151 -37.43304 -36.42818 -35.62979 -34.38431 -33.28565 -32.12057 -30.53047 -28.47278 -27.31656 -25.51400 -24.41749 -22.77413 -21.63801 -20.92557 -19.94352 -18.91363 -18.58074 -17.94224 -17.21658 -16.67048 -16.26923 -15.75784 -15.39746 -15.11794 -15.08428 -14.71659 -14.36493 -14.01464 -13.74937 -13.53616 -13.39171 -12.97042 -12.91944 -12.73705 -12.62471 -12.58250 -12.26009 -12.11839 -12.09555 -11.36646 -11.09691 -11.00659 -10.61907 -10.58265 -10.07114 -9.63133 -8.15885 -6.32863 0.36659 1.00294 1.46622 1.47576 1.58760 1.64516 2.17806 2.26961 2.45081 3.12342 3.15925 3.39814 3.55588 4.06247 4.13484 4.17661 4.28244 4.44365 4.68874 4.71920 4.76619 4.81511 4.88436 4.95342 5.01854 5.11446 5.12697 5.18494 5.40002 5.56096 5.61721 5.66868 5.85103 6.11543 6.22743 6.75597 7.20230 7.26936 7.36422 7.72163 8.90896 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.004672 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.478019 B = 5991.155325 C = 6501.249919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.042 4.042 3 C 0.021 3.979 4 N -0.378 5.378 5 O 0.098 5.902 6 C -0.020 4.020 7 C -0.068 4.068 8 C 0.025 3.975 9 N -0.649 5.649 10 C 0.700 3.300 11 O -0.632 6.632 12 N -0.712 5.712 13 C 0.290 3.710 14 H -0.003 1.003 15 C -0.134 4.134 16 C -0.542 4.542 17 H 0.076 0.924 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.973 3.027 21 H -0.258 1.258 22 H -0.279 1.279 23 H -0.286 1.286 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.424 0.576 33 H 0.405 0.595 34 H 0.043 0.957 35 H 0.010 0.990 36 H 0.065 0.935 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 6.343 -13.995 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 C -0.140 4.140 4 N -0.087 5.087 5 O 0.038 5.962 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.073 4.073 9 N -0.306 5.306 10 C 0.401 3.599 11 O -0.512 6.512 12 N -0.365 5.365 13 C 0.186 3.814 14 H 0.015 0.985 15 C -0.193 4.193 16 C -0.580 4.580 17 H 0.094 0.906 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.798 3.202 21 H -0.182 1.182 22 H -0.205 1.205 23 H -0.212 1.212 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.264 0.736 33 H 0.240 0.760 34 H 0.062 0.938 35 H 0.029 0.971 36 H 0.084 0.916 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.754 6.683 -14.660 17.108 hybrid contribution 1.022 -1.186 1.265 2.012 sum 6.776 5.497 -13.395 15.986 Atomic orbital electron populations 1.21621 0.93918 1.02585 1.01504 1.19933 0.96949 0.87617 1.03467 1.23921 0.97661 0.98709 0.93715 1.73740 1.17851 0.93472 1.23631 1.84833 1.40807 1.29006 1.41580 1.25030 0.95570 0.96437 0.91534 1.20541 0.97013 0.94409 1.00557 1.17761 1.02512 0.91928 0.95119 1.41373 1.12796 1.64090 1.12313 1.16192 0.84506 0.79008 0.80202 1.90889 1.18200 1.61312 1.80805 1.45356 1.15945 1.57239 1.17960 1.18243 0.91327 0.92717 0.79109 0.98522 1.21916 0.99664 0.96320 1.01383 1.21548 1.16201 1.11874 1.08415 0.90612 1.25783 0.95309 1.00325 0.97141 1.70070 1.24903 1.41666 1.19055 0.85286 0.78416 0.78311 0.78233 1.18205 1.20516 1.21202 0.95184 0.91456 0.90398 0.87635 0.91515 0.86183 0.87813 0.89711 0.73634 0.75991 0.93807 0.97100 0.91594 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.85 71.98 0.71 -3.29 16 2 C -0.04 -1.22 6.53 29.85 0.19 -1.02 16 3 C 0.02 0.66 6.63 43.68 0.29 0.95 16 4 N -0.38 -11.82 11.99 -48.97 -0.59 -12.41 16 5 O 0.10 2.70 11.20 69.30 0.78 3.47 16 6 C -0.02 -0.48 7.51 25.13 0.19 -0.30 16 7 C -0.07 -1.01 10.45 71.23 0.74 -0.27 16 8 C 0.03 0.76 6.07 38.03 0.23 0.99 16 9 N -0.65 -18.60 5.48 -316.42 -1.73 -20.33 16 10 C 0.70 27.79 8.43 179.05 1.51 29.30 16 11 O -0.63 -31.90 15.99 -4.03 -0.06 -31.96 16 12 N -0.71 -28.33 5.07 -461.39 -2.34 -30.67 16 13 C 0.29 14.71 2.56 44.24 0.11 14.83 16 14 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 15 C -0.13 -6.67 9.26 71.98 0.67 -6.00 16 16 C -0.54 -27.82 8.73 25.60 0.22 -27.60 16 17 H 0.08 3.60 7.74 -2.91 -0.02 3.57 16 18 C 0.01 0.76 5.30 84.65 0.45 1.21 16 19 N -0.92 -52.06 11.32 21.45 0.24 -51.82 16 20 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 24 H 0.03 1.03 8.13 -2.39 -0.02 1.01 16 25 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.19 8.08 -2.38 -0.02 2.17 16 29 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.42 8.53 8.84 -92.71 -0.82 7.71 16 33 H 0.40 12.98 8.56 -92.71 -0.79 12.19 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 37 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -71.16 321.69 3.13 -68.03 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.51 Total: 23.81 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.32 Total: 8.79 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -4.42 Total: -115.24 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: 0.71 Total: -28.49 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -71.16 3.13 -68.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120227817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.617 kcal (2) G-P(sol) polarization free energy of solvation -71.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds