Wall clock time and date at job start Mon Mar 30 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99850 * 2 1 4 4 H 1.48497 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46910 * 299.99544 * 3 2 1 6 6 H 1.48502 * 109.47177 * 59.99405 * 3 2 1 7 7 C 1.37877 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99484 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46884 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47337 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47371 * 180.02562 * 11 10 9 13 13 C 1.33964 * 124.21416 * 90.02669 * 12 11 10 14 14 O 1.21546 * 123.80562 * 0.24812 * 13 12 11 15 15 N 1.34884 * 112.38551 * 179.97438 * 13 12 11 16 16 C 1.46224 * 106.14376 * 359.97438 * 15 13 12 17 17 C 1.53609 * 111.44364 * 239.64410 * 16 15 13 18 18 C 1.55158 * 102.67019 * 216.62894 * 17 16 15 19 19 N 1.48622 * 103.35419 * 36.59723 * 18 17 16 20 20 C 1.48187 * 105.86284 * 321.38897 * 19 18 17 21 21 C 1.35102 * 124.21620 * 270.00360 * 12 11 10 22 22 O 1.21238 * 127.39490 * 0.02562 * 21 12 11 23 23 H 0.96995 * 120.00038 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46898 * 59.99959 * 9 7 2 25 25 H 1.08993 * 109.47202 * 299.99652 * 9 7 2 26 26 H 1.09011 * 109.46767 * 60.00102 * 10 9 7 27 27 H 1.09003 * 109.47815 * 300.00585 * 10 9 7 28 28 H 1.08997 * 109.46871 * 60.00281 * 11 10 9 29 29 H 1.09005 * 109.47320 * 300.00243 * 11 10 9 30 30 H 0.96995 * 126.92364 * 179.97438 * 15 13 12 31 31 H 1.08995 * 110.77275 * 334.92561 * 17 16 15 32 32 H 1.09004 * 110.77158 * 98.33781 * 17 16 15 33 33 H 1.08996 * 110.64671 * 278.13257 * 18 17 16 34 34 H 1.08999 * 110.78274 * 155.12875 * 18 17 16 35 35 H 1.00903 * 111.00424 * 200.85112 * 19 18 17 36 36 H 1.08997 * 110.01860 * 265.79845 * 20 19 18 37 37 H 1.09005 * 110.01767 * 144.39980 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4324 -6.1005 0.0018 13 6 2.9215 -6.6728 1.1099 14 8 2.6221 -6.3296 2.2368 15 7 3.7791 -7.6767 0.8340 16 6 3.8504 -7.7613 -0.6241 17 6 3.4079 -9.1430 -1.1287 18 6 4.3628 -9.3897 -2.3265 19 7 5.6449 -8.7906 -1.8724 20 6 5.2778 -7.5580 -1.1363 21 6 2.9262 -6.6785 -1.1151 22 8 2.6781 -6.3880 -2.2657 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6042 0.8906 27 1 2.8721 -3.6043 -0.8894 28 1 0.8535 -5.0451 -0.8886 29 1 0.8540 -5.0446 0.8914 30 1 4.2530 -8.2307 1.4738 31 1 3.5511 -9.9001 -0.3579 32 1 2.3699 -9.1191 -1.4605 33 1 3.9974 -8.8835 -3.2199 34 1 4.4821 -10.4570 -2.5126 35 1 6.2430 -8.5786 -2.6569 36 1 5.3152 -6.6985 -1.8057 37 1 5.9574 -7.4080 -0.2973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167839393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:44 Heat of formation + Delta-G solvation = -44.220576 kcal Electronic energy + Delta-G solvation = -20634.597429 eV Core-core repulsion = 17412.435857 eV Total energy + Delta-G solvation = -3222.161571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.70554 -38.93247 -38.13147 -35.90972 -35.14262 -33.34127 -31.35325 -30.17774 -28.79255 -27.29236 -24.19392 -23.52234 -22.20250 -21.53306 -20.57891 -20.12665 -18.03739 -17.34864 -16.54743 -16.42018 -16.11995 -15.71799 -15.30074 -14.72700 -14.44266 -14.34799 -13.99449 -13.82865 -13.23179 -12.93986 -12.74986 -12.40015 -12.19948 -12.05769 -11.99595 -11.52208 -11.03104 -10.87420 -10.83241 -10.53183 -10.20734 -9.83828 -9.79158 -9.62936 -9.31961 -9.05119 -9.00222 -8.35835 -6.00635 -4.02906 1.51715 2.24836 2.93789 3.04161 3.31810 3.39034 3.43517 3.67694 3.90706 4.04769 4.10555 4.46311 4.72502 4.82730 4.99862 5.15366 5.28629 5.35524 5.38447 5.42268 5.51045 5.59987 5.71049 5.73786 5.97891 6.14408 6.48983 6.67484 6.71586 6.78804 6.98698 7.10246 7.34683 7.63339 7.76117 7.97706 8.12496 8.40164 9.03049 9.61106 11.10855 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.004166 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.748539 B = 6718.784770 C = 6981.630773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.571 5.571 13 C 0.700 3.300 14 O -0.532 6.532 15 N -0.718 5.718 16 C 0.107 3.893 17 C -0.113 4.113 18 C 0.037 3.963 19 N -0.666 5.666 20 C 0.047 3.953 21 C 0.532 3.468 22 O -0.460 6.460 23 H 0.260 0.740 24 H 0.019 0.981 25 H 0.021 0.979 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.439 0.561 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.346 0.654 36 H 0.063 0.937 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 -21.037 -3.371 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.005 4.005 12 N -0.316 5.316 13 C 0.401 3.599 14 O -0.405 6.405 15 N -0.383 5.383 16 C 0.015 3.985 17 C -0.153 4.153 18 C -0.093 4.093 19 N -0.296 5.296 20 C -0.084 4.084 21 C 0.317 3.683 22 O -0.329 6.329 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.284 0.716 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.162 0.838 36 H 0.081 0.919 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.579 -20.894 -2.811 22.761 hybrid contribution 0.366 1.400 -0.430 1.510 sum 8.945 -19.494 -3.241 21.692 Atomic orbital electron populations 1.69967 1.06034 1.26563 1.50829 1.25013 0.94865 0.99276 0.95252 0.86521 0.80098 0.83712 0.77593 1.19766 1.20978 1.20951 1.21217 0.93052 0.90858 1.50636 0.92650 1.19040 0.93789 0.90838 0.97610 1.22010 0.99962 0.93058 1.01110 1.22135 0.90270 0.83788 1.04352 1.46784 1.43526 1.34115 1.07211 1.16089 0.79418 0.79858 0.84530 1.91032 1.62818 1.66269 1.20346 1.45459 1.49000 1.37618 1.06218 1.21527 0.97165 0.97132 0.82693 1.22633 1.00373 0.93410 0.98835 1.23139 0.88808 1.01101 0.96221 1.63233 1.14288 1.23862 1.28204 1.22749 0.92490 0.93242 0.99929 1.20375 0.80450 0.82145 0.85308 1.90807 1.59626 1.64913 1.17554 0.93000 0.96219 0.96082 0.92540 0.92920 0.89036 0.88731 0.71555 0.88545 0.89665 0.92611 0.88960 0.83761 0.91863 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.12 -2.63 5.48 -26.73 -0.15 -2.78 16 11 C 0.11 2.04 5.72 -4.04 -0.02 2.01 16 12 N -0.57 -8.96 2.62 -120.88 -0.32 -9.27 16 13 C 0.70 10.57 8.64 -87.55 -0.76 9.82 16 14 O -0.53 -9.94 17.49 5.33 0.09 -9.85 16 15 N -0.72 -7.50 5.86 -53.61 -0.31 -7.82 16 16 C 0.11 1.10 1.24 -132.85 -0.17 0.93 16 17 C -0.11 -0.89 6.39 -25.27 -0.16 -1.05 16 18 C 0.04 0.26 7.57 -1.73 -0.01 0.24 16 19 N -0.67 -4.95 7.53 -110.23 -0.83 -5.78 16 20 C 0.05 0.42 7.03 -3.11 -0.02 0.40 16 21 C 0.53 7.53 6.65 -10.89 -0.07 7.46 16 22 O -0.46 -7.57 17.79 5.59 0.10 -7.47 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.57 8.02 -51.93 -0.42 1.16 16 29 H 0.09 1.69 7.86 -51.93 -0.41 1.28 16 30 H 0.44 3.43 8.96 -40.82 -0.37 3.06 16 31 H 0.10 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.35 2.11 8.92 -39.29 -0.35 1.76 16 36 H 0.06 0.63 7.73 -51.93 -0.40 0.23 16 37 H 0.10 0.84 7.97 -51.93 -0.41 0.42 16 LS Contribution 313.97 15.07 4.73 4.73 Total: -1.00 -33.69 313.97 -7.99 -41.68 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.26 Total: -0.64 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.91 Total: 3.82 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.72 Total: -49.23 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.19 Total: -17.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.69 -7.99 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167839393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.537 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds