Wall clock time and date at job start Mon Mar 30 2020 05:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99850 * 2 1 4 4 H 1.48497 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46910 * 299.99544 * 3 2 1 6 6 H 1.48502 * 109.47177 * 59.99405 * 3 2 1 7 7 C 1.37877 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99484 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46884 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47337 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47371 * 180.02562 * 11 10 9 13 13 C 1.33964 * 124.21416 * 90.02669 * 12 11 10 14 14 O 1.21546 * 123.80562 * 0.24812 * 13 12 11 15 15 N 1.34884 * 112.38551 * 179.97438 * 13 12 11 16 16 C 1.46224 * 106.14376 * 359.97438 * 15 13 12 17 17 C 1.53609 * 111.44364 * 239.64410 * 16 15 13 18 18 C 1.55158 * 102.67019 * 216.62894 * 17 16 15 19 19 N 1.48622 * 103.35419 * 36.59723 * 18 17 16 20 20 C 1.48187 * 105.86284 * 321.38897 * 19 18 17 21 21 C 1.35102 * 124.21620 * 270.00360 * 12 11 10 22 22 O 1.21238 * 127.39490 * 0.02562 * 21 12 11 23 23 H 0.96995 * 120.00038 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46898 * 59.99959 * 9 7 2 25 25 H 1.08993 * 109.47202 * 299.99652 * 9 7 2 26 26 H 1.09011 * 109.46767 * 60.00102 * 10 9 7 27 27 H 1.09003 * 109.47815 * 300.00585 * 10 9 7 28 28 H 1.08997 * 109.46871 * 60.00281 * 11 10 9 29 29 H 1.09005 * 109.47320 * 300.00243 * 11 10 9 30 30 H 0.96995 * 126.92364 * 179.97438 * 15 13 12 31 31 H 1.08995 * 110.77275 * 334.92561 * 17 16 15 32 32 H 1.09004 * 110.77158 * 98.33781 * 17 16 15 33 33 H 1.08996 * 110.64671 * 278.13257 * 18 17 16 34 34 H 1.08999 * 110.78274 * 155.12875 * 18 17 16 35 35 H 1.00903 * 111.00424 * 200.85112 * 19 18 17 36 36 H 1.08997 * 110.01860 * 265.79845 * 20 19 18 37 37 H 1.09005 * 110.01767 * 144.39980 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4324 -6.1005 0.0018 13 6 2.9215 -6.6728 1.1099 14 8 2.6221 -6.3296 2.2368 15 7 3.7791 -7.6767 0.8340 16 6 3.8504 -7.7613 -0.6241 17 6 3.4079 -9.1430 -1.1287 18 6 4.3628 -9.3897 -2.3265 19 7 5.6449 -8.7906 -1.8724 20 6 5.2778 -7.5580 -1.1363 21 6 2.9262 -6.6785 -1.1151 22 8 2.6781 -6.3880 -2.2657 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6042 0.8906 27 1 2.8721 -3.6043 -0.8894 28 1 0.8535 -5.0451 -0.8886 29 1 0.8540 -5.0446 0.8914 30 1 4.2530 -8.2307 1.4738 31 1 3.5511 -9.9001 -0.3579 32 1 2.3699 -9.1191 -1.4605 33 1 3.9974 -8.8835 -3.2199 34 1 4.4821 -10.4570 -2.5126 35 1 6.2430 -8.5786 -2.6569 36 1 5.3152 -6.6985 -1.8057 37 1 5.9574 -7.4080 -0.2973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167839393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:43 Heat of formation + Delta-G solvation = -70.691238 kcal Electronic energy + Delta-G solvation = -20635.745283 eV Core-core repulsion = 17412.435857 eV Total energy + Delta-G solvation = -3223.309425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.81735 -40.04287 -39.12389 -37.24786 -36.51637 -35.11483 -33.18369 -30.85685 -29.63452 -29.08027 -25.89912 -24.77793 -22.97397 -22.82086 -22.04101 -21.36841 -19.18782 -18.51779 -18.15491 -17.69028 -17.15107 -16.87993 -16.67924 -16.38599 -15.78203 -15.62010 -15.37046 -14.76150 -14.51550 -14.15615 -14.00949 -13.57755 -13.37129 -13.31770 -12.95442 -12.85749 -12.74956 -12.62771 -12.53325 -12.01514 -11.75647 -11.62559 -11.39750 -11.27708 -10.83231 -10.59390 -10.53940 -9.64670 -8.23517 -6.34798 0.37750 1.07049 1.38325 1.38820 1.52123 1.81844 1.98207 2.38930 2.71737 3.09873 3.15910 3.32384 3.38620 3.78150 4.06920 4.07961 4.17771 4.21604 4.25606 4.37923 4.45838 4.64039 4.72483 4.80583 4.92631 4.95053 4.97140 5.03562 5.43037 5.51792 5.61310 5.72907 5.77562 5.94771 6.17119 6.22510 6.26142 6.79801 6.99996 7.34249 8.88609 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.004166 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.748539 B = 6718.784770 C = 6981.630773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.105 4.105 11 C 0.123 3.877 12 N -0.578 5.578 13 C 0.698 3.302 14 O -0.573 6.573 15 N -0.689 5.689 16 C 0.115 3.885 17 C -0.110 4.110 18 C 0.038 3.962 19 N -0.660 5.660 20 C 0.049 3.951 21 C 0.527 3.473 22 O -0.486 6.486 23 H 0.265 0.735 24 H 0.002 0.998 25 H 0.000 1.000 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.455 0.545 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.116 0.884 35 H 0.356 0.644 36 H 0.051 0.949 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.789 -22.321 -3.686 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.143 4.143 11 C 0.003 3.997 12 N -0.323 5.323 13 C 0.399 3.601 14 O -0.448 6.448 15 N -0.355 5.355 16 C 0.023 3.977 17 C -0.149 4.149 18 C -0.091 4.091 19 N -0.291 5.291 20 C -0.082 4.082 21 C 0.315 3.685 22 O -0.356 6.356 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.018 0.982 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.304 0.696 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.173 0.827 36 H 0.069 0.931 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.402 -22.238 -3.143 24.751 hybrid contribution -0.199 1.757 -0.374 1.808 sum 10.204 -20.481 -3.517 23.150 Atomic orbital electron populations 1.70085 1.07689 1.27869 1.51348 1.25957 0.95823 1.03301 0.94523 0.85385 0.78934 0.78678 0.77970 1.18846 1.20062 1.20172 1.21630 0.93393 0.92327 1.51046 0.92566 1.18909 0.94135 0.92237 0.95627 1.21699 0.98792 0.93398 1.00441 1.21762 0.90270 0.83136 1.04565 1.46740 1.43519 1.33728 1.08349 1.16185 0.79811 0.80452 0.83622 1.91008 1.64421 1.67694 1.21686 1.45316 1.47357 1.36046 1.06816 1.21612 0.97132 0.97027 0.81970 1.22734 1.00524 0.91876 0.99773 1.23205 0.88178 1.02364 0.95326 1.63292 1.14464 1.22601 1.28713 1.22732 0.91440 0.93697 1.00286 1.21023 0.80397 0.82518 0.84555 1.90791 1.60559 1.65833 1.18428 0.92595 0.98009 0.98179 0.93340 0.93191 0.88533 0.88915 0.69620 0.86285 0.89891 0.93505 0.86607 0.82714 0.93075 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.55 -32.07 9.11 25.60 0.23 -31.84 16 8 H 0.06 3.21 7.74 -2.92 -0.02 3.19 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.10 -4.61 5.48 30.59 0.17 -4.44 16 11 C 0.12 4.52 5.72 86.38 0.49 5.01 16 12 N -0.58 -18.07 2.62 -773.31 -2.02 -20.09 16 13 C 0.70 20.63 8.64 179.27 1.55 22.18 16 14 O -0.57 -21.41 17.49 -3.86 -0.07 -21.47 16 15 N -0.69 -13.03 5.86 -441.73 -2.59 -15.62 16 16 C 0.11 2.12 1.24 3.08 0.00 2.12 16 17 C -0.11 -1.42 6.39 31.54 0.20 -1.22 16 18 C 0.04 0.42 7.57 86.71 0.66 1.08 16 19 N -0.66 -7.85 7.53 -502.65 -3.78 -11.63 16 20 C 0.05 0.78 7.03 86.06 0.61 1.38 16 21 C 0.53 14.59 6.65 87.57 0.58 15.17 16 22 O -0.49 -15.87 17.79 -2.90 -0.05 -15.92 16 23 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 24 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 25 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 26 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.10 3.41 8.02 -2.39 -0.02 3.39 16 29 H 0.09 3.42 7.86 -2.38 -0.02 3.40 16 30 H 0.46 5.84 8.96 -92.71 -0.83 5.01 16 31 H 0.12 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.08 1.16 7.84 -2.39 -0.02 1.14 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.36 3.37 8.92 -89.69 -0.80 2.57 16 36 H 0.05 0.96 7.73 -2.39 -0.02 0.94 16 37 H 0.11 1.55 7.97 -2.38 -0.02 1.53 16 Total: -1.00 -73.41 313.97 -1.63 -75.04 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -0.53 Total: 7.72 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.10 Total: 11.73 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -8.11 Total: -104.26 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.12 Total: -37.40 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.41 -1.63 -75.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167839393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.351 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds