Wall clock time and date at job start Mon Mar 30 2020 04:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99864 * 2 1 4 4 H 1.48489 * 109.47226 * 269.99980 * 3 2 1 5 5 H 1.48506 * 109.46876 * 30.00146 * 3 2 1 6 6 H 1.48503 * 109.47010 * 149.99642 * 3 2 1 7 7 C 1.37870 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99997 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00264 * 180.02562 * 7 2 1 10 10 C 1.52991 * 109.47626 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47450 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00180 * 180.02562 * 11 10 9 13 13 O 1.21531 * 119.99978 * 0.02562 * 12 11 10 14 14 C 1.47686 * 120.00067 * 180.02562 * 12 11 10 15 15 C 1.32879 * 118.19317 * 83.72708 * 14 12 11 16 16 C 1.47526 * 118.19709 * 0.41598 * 15 14 12 17 17 O 1.21456 * 119.99621 * 354.23087 * 16 15 14 18 18 O 1.34755 * 120.00397 * 174.23006 * 16 15 14 19 19 C 1.50123 * 123.61180 * 180.39243 * 15 14 12 20 20 C 1.52997 * 110.01696 * 342.89507 * 19 15 14 21 21 C 1.53059 * 108.70570 * 49.97880 * 20 19 15 22 22 C 1.50118 * 118.19051 * 263.74591 * 14 12 11 23 23 H 0.96995 * 119.99694 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46507 * 59.99573 * 9 7 2 25 25 H 1.09005 * 109.46601 * 300.00086 * 9 7 2 26 26 H 1.09004 * 109.46917 * 59.99576 * 10 9 7 27 27 H 1.09004 * 109.46962 * 300.00429 * 10 9 7 28 28 H 0.96999 * 120.00133 * 0.02562 * 11 10 9 29 29 H 0.96699 * 116.99950 * 179.97438 * 18 16 15 30 30 H 1.08996 * 109.35782 * 103.03116 * 19 15 14 31 31 H 1.09003 * 109.36258 * 222.76188 * 19 15 14 32 32 H 1.08997 * 109.62211 * 169.59350 * 20 19 15 33 33 H 1.08999 * 109.62218 * 290.16269 * 20 19 15 34 34 H 1.08998 * 109.66191 * 171.82313 * 21 20 19 35 35 H 1.08995 * 109.80638 * 51.30676 * 21 20 19 36 36 H 1.08995 * 109.36298 * 282.98270 * 22 14 12 37 37 H 1.09003 * 109.36150 * 42.72160 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 7 5.4866 -2.6364 0.0009 12 6 6.1605 -3.8035 0.0003 13 8 5.5529 -4.8561 -0.0007 14 6 7.6374 -3.8035 0.0008 15 6 8.2647 -3.6764 1.1653 16 6 7.4477 -3.5525 2.3874 17 8 6.2394 -3.4628 2.3035 18 8 8.0420 -3.5388 3.5967 19 6 9.7592 -3.6525 1.3058 20 6 10.4133 -4.2078 0.0391 21 6 9.8052 -3.5040 -1.1764 22 6 8.3470 -3.9467 -1.3143 23 1 -0.4849 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1501 -0.8893 27 1 3.6579 -3.1505 0.8907 28 1 5.9716 -1.7964 0.0014 29 1 7.4652 -3.4554 4.3684 30 1 10.0908 -2.6263 1.4637 31 1 10.0516 -4.2623 2.1607 32 1 11.4865 -4.0195 0.0686 33 1 10.2286 -5.2800 -0.0283 34 1 10.3578 -3.7799 -2.0745 35 1 9.8482 -2.4238 -1.0375 36 1 8.3142 -4.9891 -1.6310 37 1 7.8521 -3.3261 -2.0614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310532685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:43 Heat of formation + Delta-G solvation = -128.090465 kcal Electronic energy + Delta-G solvation = -20533.440098 eV Core-core repulsion = 17275.348905 eV Total energy + Delta-G solvation = -3258.091194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92174 -39.10183 -37.81166 -36.12833 -34.84547 -32.75633 -31.89111 -31.41613 -29.83567 -25.43781 -24.58674 -23.74417 -21.87893 -20.80859 -20.53153 -18.52884 -17.96458 -17.49948 -16.85455 -16.06571 -15.47103 -15.02401 -14.93950 -14.42681 -14.25312 -14.16489 -14.06190 -13.73408 -13.16092 -12.87109 -12.68759 -12.59446 -12.53778 -11.63447 -11.42823 -11.40605 -11.17016 -11.14018 -11.06203 -10.43493 -10.31148 -10.23861 -9.91722 -9.48955 -9.33773 -9.21423 -8.58570 -8.35894 -6.06714 -4.05964 0.76867 2.70877 2.87641 3.00010 3.27602 3.35035 3.37397 3.58378 4.41385 4.41594 4.50621 4.56636 4.77927 4.82552 5.07516 5.16573 5.20615 5.26386 5.40120 5.53034 5.55469 5.65309 5.72815 5.88875 5.97051 6.18309 6.22966 6.34199 6.37667 6.67177 6.89383 7.22785 7.33018 7.72569 7.78206 7.99034 8.48996 8.64261 8.98349 9.53821 11.06545 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024602 B = 0.004664 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.865011 B = 6002.146254 C = 6193.955385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.136 3.864 11 N -0.707 5.707 12 C 0.553 3.447 13 O -0.542 6.542 14 C -0.053 4.053 15 C -0.126 4.126 16 C 0.498 3.502 17 O -0.478 6.478 18 O -0.513 6.513 19 C -0.073 4.073 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.082 4.082 23 H 0.264 0.736 24 H 0.021 0.979 25 H 0.016 0.984 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.392 0.608 29 H 0.414 0.586 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.966 -5.215 1.286 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.014 3.986 11 N -0.355 5.355 12 C 0.339 3.661 13 O -0.421 6.421 14 C -0.057 4.057 15 C -0.128 4.128 16 C 0.341 3.659 17 O -0.364 6.364 18 O -0.325 6.325 19 C -0.109 4.109 20 C -0.160 4.160 21 C -0.159 4.159 22 C -0.119 4.119 23 H 0.074 0.926 24 H 0.039 0.961 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.224 0.776 29 H 0.272 0.728 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 24.231 -5.854 0.936 24.945 hybrid contribution 0.045 1.399 0.679 1.556 sum 24.276 -4.455 1.615 24.734 Atomic orbital electron populations 1.69909 1.06263 1.26951 1.50734 1.24991 0.94749 0.99079 0.94462 0.86756 0.80295 0.83604 0.78452 1.20230 1.21291 1.19149 1.20937 0.88706 0.94873 1.51266 0.90636 1.19782 0.97904 0.91534 0.96639 1.21442 0.75790 0.99860 1.01466 1.46051 1.09003 1.07071 1.73413 1.18190 0.86531 0.85038 0.76370 1.90782 1.68928 1.31237 1.51104 1.21844 0.94866 0.93295 0.95707 1.20371 0.96312 1.06968 0.89109 1.21398 0.86647 0.73563 0.84254 1.91055 1.15065 1.44044 1.86276 1.84533 1.45536 1.85723 1.16748 1.20344 0.88661 1.02668 0.99273 1.21603 0.99925 1.00616 0.93885 1.21608 0.94428 1.01043 0.98815 1.20510 0.95318 1.03702 0.92372 0.92620 0.96082 0.96609 0.92219 0.91788 0.77565 0.72789 0.89798 0.89581 0.90818 0.91205 0.90606 0.91036 0.88585 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 8 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.14 3.05 5.61 -4.05 -0.02 3.03 16 11 N -0.71 -13.08 4.58 -61.31 -0.28 -13.36 16 12 C 0.55 10.06 4.32 -12.40 -0.05 10.01 16 13 O -0.54 -12.14 17.05 -7.72 -0.13 -12.27 16 14 C -0.05 -0.70 5.60 -102.90 -0.58 -1.27 16 15 C -0.13 -1.49 5.84 -102.96 -0.60 -2.09 16 16 C 0.50 6.92 8.16 34.52 0.28 7.20 16 17 O -0.48 -8.76 13.76 -24.23 -0.33 -9.09 16 18 O -0.51 -5.22 12.73 -40.64 -0.52 -5.74 16 19 C -0.07 -0.58 5.51 -28.16 -0.16 -0.74 16 20 C -0.12 -0.80 5.96 -26.70 -0.16 -0.96 16 21 C -0.12 -0.81 5.98 -26.70 -0.16 -0.97 16 22 C -0.08 -0.77 5.79 -28.16 -0.16 -0.94 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 25 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 26 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.39 6.26 8.46 -40.82 -0.35 5.92 16 29 H 0.41 2.72 9.11 45.56 0.42 3.13 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.66 7.87 -51.93 -0.41 0.25 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -36.69 312.09 -7.10 -43.79 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.49 Total: 3.09 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.16 Total: -0.87 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.49 Total: -40.58 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.98 Total: -27.10 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.69 -7.10 -43.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310532685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.299 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds