Wall clock time and date at job start Mon Mar 30 2020 04:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99864 * 2 1 4 4 H 1.48489 * 109.47226 * 269.99980 * 3 2 1 5 5 H 1.48506 * 109.46876 * 30.00146 * 3 2 1 6 6 H 1.48503 * 109.47010 * 149.99642 * 3 2 1 7 7 C 1.37870 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99997 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00264 * 180.02562 * 7 2 1 10 10 C 1.52991 * 109.47626 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47450 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00180 * 180.02562 * 11 10 9 13 13 O 1.21531 * 119.99978 * 0.02562 * 12 11 10 14 14 C 1.47686 * 120.00067 * 180.02562 * 12 11 10 15 15 C 1.32879 * 118.19317 * 83.72708 * 14 12 11 16 16 C 1.47526 * 118.19709 * 0.41598 * 15 14 12 17 17 O 1.21456 * 119.99621 * 354.23087 * 16 15 14 18 18 O 1.34755 * 120.00397 * 174.23006 * 16 15 14 19 19 C 1.50123 * 123.61180 * 180.39243 * 15 14 12 20 20 C 1.52997 * 110.01696 * 342.89507 * 19 15 14 21 21 C 1.53059 * 108.70570 * 49.97880 * 20 19 15 22 22 C 1.50118 * 118.19051 * 263.74591 * 14 12 11 23 23 H 0.96995 * 119.99694 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46507 * 59.99573 * 9 7 2 25 25 H 1.09005 * 109.46601 * 300.00086 * 9 7 2 26 26 H 1.09004 * 109.46917 * 59.99576 * 10 9 7 27 27 H 1.09004 * 109.46962 * 300.00429 * 10 9 7 28 28 H 0.96999 * 120.00133 * 0.02562 * 11 10 9 29 29 H 0.96699 * 116.99950 * 179.97438 * 18 16 15 30 30 H 1.08996 * 109.35782 * 103.03116 * 19 15 14 31 31 H 1.09003 * 109.36258 * 222.76188 * 19 15 14 32 32 H 1.08997 * 109.62211 * 169.59350 * 20 19 15 33 33 H 1.08999 * 109.62218 * 290.16269 * 20 19 15 34 34 H 1.08998 * 109.66191 * 171.82313 * 21 20 19 35 35 H 1.08995 * 109.80638 * 51.30676 * 21 20 19 36 36 H 1.08995 * 109.36298 * 282.98270 * 22 14 12 37 37 H 1.09003 * 109.36150 * 42.72160 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 7 5.4866 -2.6364 0.0009 12 6 6.1605 -3.8035 0.0003 13 8 5.5529 -4.8561 -0.0007 14 6 7.6374 -3.8035 0.0008 15 6 8.2647 -3.6764 1.1653 16 6 7.4477 -3.5525 2.3874 17 8 6.2394 -3.4628 2.3035 18 8 8.0420 -3.5388 3.5967 19 6 9.7592 -3.6525 1.3058 20 6 10.4133 -4.2078 0.0391 21 6 9.8052 -3.5040 -1.1764 22 6 8.3470 -3.9467 -1.3143 23 1 -0.4849 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1501 -0.8893 27 1 3.6579 -3.1505 0.8907 28 1 5.9716 -1.7964 0.0014 29 1 7.4652 -3.4554 4.3684 30 1 10.0908 -2.6263 1.4637 31 1 10.0516 -4.2623 2.1607 32 1 11.4865 -4.0195 0.0686 33 1 10.2286 -5.2800 -0.0283 34 1 10.3578 -3.7799 -2.0745 35 1 9.8482 -2.4238 -1.0375 36 1 8.3142 -4.9891 -1.6310 37 1 7.8521 -3.3261 -2.0614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310532685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:42 Heat of formation + Delta-G solvation = -155.437466 kcal Electronic energy + Delta-G solvation = -20534.625953 eV Core-core repulsion = 17275.348905 eV Total energy + Delta-G solvation = -3259.277049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.04539 -40.38012 -38.73125 -37.18621 -36.65362 -34.81766 -32.92387 -32.27266 -31.52937 -27.15118 -25.60133 -24.71018 -23.01131 -22.56673 -21.70450 -19.50564 -19.12233 -18.99363 -18.62821 -17.27854 -16.67427 -16.46301 -16.25019 -16.18808 -15.37925 -15.21868 -15.07322 -14.70494 -14.65696 -14.38763 -13.91075 -13.62127 -13.39512 -13.32042 -13.05484 -12.67406 -12.32941 -12.19558 -12.15167 -11.80989 -11.79407 -11.63018 -11.55271 -11.36071 -10.81806 -10.80246 -10.27664 -10.03224 -8.33197 -6.40823 -0.25365 1.35117 1.38694 1.50162 1.59418 1.65994 1.94287 2.26105 2.34073 3.01218 3.48341 3.79124 3.85242 4.05487 4.10520 4.26155 4.35238 4.38581 4.48907 4.60662 4.69349 4.69789 4.93547 5.01745 5.06959 5.10881 5.24837 5.28903 5.35014 5.37441 5.43121 5.50890 5.51359 5.61134 6.19011 6.52012 6.66166 6.82888 7.20103 7.23676 8.83911 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024602 B = 0.004664 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.865011 B = 6002.146254 C = 6193.955385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.961 3.039 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.541 4.541 8 H 0.026 0.974 9 C -0.008 4.008 10 C 0.153 3.847 11 N -0.699 5.699 12 C 0.551 3.449 13 O -0.594 6.594 14 C -0.062 4.062 15 C -0.114 4.114 16 C 0.495 3.505 17 O -0.532 6.532 18 O -0.496 6.496 19 C -0.069 4.069 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.081 4.081 23 H 0.269 0.731 24 H 0.029 0.971 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.031 0.969 28 H 0.407 0.593 29 H 0.430 0.570 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.323 -3.413 1.102 29.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.046 4.046 10 C 0.029 3.971 11 N -0.349 5.349 12 C 0.340 3.660 13 O -0.476 6.476 14 C -0.066 4.066 15 C -0.116 4.116 16 C 0.341 3.659 17 O -0.423 6.423 18 O -0.309 6.309 19 C -0.106 4.106 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.118 4.118 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.242 0.758 29 H 0.291 0.709 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 28.654 -4.051 0.773 28.949 hybrid contribution -1.381 0.730 0.850 1.778 sum 27.273 -3.322 1.623 27.522 Atomic orbital electron populations 1.70075 1.08528 1.28520 1.51802 1.26075 0.95724 1.03824 0.93479 0.85516 0.79394 0.77244 0.79590 1.18384 1.20866 1.16687 1.21224 0.91416 0.93436 1.51877 0.95540 1.19605 0.94602 0.92637 0.97714 1.20920 0.78495 0.98411 0.99234 1.45810 1.07219 1.08368 1.73500 1.19035 0.88895 0.83763 0.74318 1.90743 1.70776 1.32916 1.53145 1.21785 0.91219 0.95466 0.98126 1.20791 0.98340 1.04910 0.87530 1.21939 0.86134 0.72143 0.85725 1.91048 1.17463 1.46764 1.87052 1.84501 1.45309 1.84670 1.16427 1.20500 0.85358 1.04133 1.00607 1.21640 1.01258 1.00210 0.92702 1.21627 0.92098 1.01521 0.99934 1.20649 0.97094 1.03935 0.90142 0.92194 0.95319 0.94322 0.93674 0.95094 0.75775 0.70916 0.87832 0.88825 0.88156 0.91667 0.88474 0.90185 0.88586 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.73 13.96 21.44 0.30 -60.43 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.96 43.82 27.47 68.60 1.88 45.70 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 7 C -0.54 -32.66 9.66 25.60 0.25 -32.41 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.76 16 9 C -0.01 -0.38 4.16 29.85 0.12 -0.26 16 10 C 0.15 7.14 5.61 86.38 0.48 7.63 16 11 N -0.70 -26.13 4.58 -466.19 -2.13 -28.27 16 12 C 0.55 20.43 4.32 86.74 0.37 20.80 16 13 O -0.59 -27.87 17.05 8.67 0.15 -27.72 16 14 C -0.06 -1.55 5.60 -18.72 -0.10 -1.66 16 15 C -0.11 -2.46 5.84 -18.77 -0.11 -2.57 16 16 C 0.50 13.24 8.16 70.27 0.57 13.81 16 17 O -0.53 -19.86 13.76 24.76 0.34 -19.51 16 18 O -0.50 -9.07 12.73 -56.65 -0.72 -9.79 16 19 C -0.07 -0.84 5.51 29.67 0.16 -0.68 16 20 C -0.12 -1.05 5.96 30.61 0.18 -0.86 16 21 C -0.11 -1.06 5.98 30.62 0.18 -0.87 16 22 C -0.08 -1.35 5.79 29.67 0.17 -1.18 16 23 H 0.27 15.89 8.31 -92.71 -0.77 15.11 16 24 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 25 H 0.04 1.71 7.57 -2.38 -0.02 1.69 16 26 H 0.04 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.41 12.55 8.46 -92.71 -0.78 11.76 16 29 H 0.43 4.92 9.11 -74.06 -0.67 4.25 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.06 7.87 -2.39 -0.02 1.04 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 34 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -84.55 312.09 2.15 -82.40 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.42 Total: 15.05 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 2.75 Total: 2.58 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -1.84 Total: -88.70 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -0.23 Total: -57.02 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -84.55 2.15 -82.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310532685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.041 kcal (2) G-P(sol) polarization free energy of solvation -84.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds