Wall clock time and date at job start Mon Mar 30 2020 04:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 109.47020 * 2 1 4 4 C 1.35164 * 125.61007 * 89.99582 * 3 2 1 5 5 C 1.40323 * 107.12828 * 180.02562 * 4 3 2 6 6 C 1.36666 * 106.70457 * 0.02562 * 5 4 3 7 7 C 1.46511 * 125.99823 * 180.02562 * 6 5 4 8 8 O 1.21739 * 120.00260 * 5.29417 * 7 6 5 9 9 N 1.34785 * 120.00134 * 185.30034 * 7 6 5 10 10 C 1.36851 * 119.99944 * 174.15262 * 9 7 6 11 11 H 1.08002 * 119.99668 * 144.04921 * 10 9 7 12 12 C 1.39027 * 120.00044 * 324.32581 * 10 9 7 13 13 N 1.31383 * 120.00243 * 340.92651 * 12 10 9 14 14 Si 1.86799 * 119.99857 * 160.92178 * 12 10 9 15 15 H 1.48503 * 109.47191 * 90.00135 * 14 12 10 16 16 H 1.48499 * 109.47030 * 209.99881 * 14 12 10 17 17 H 1.48501 * 109.47057 * 329.99728 * 14 12 10 18 18 C 1.46492 * 119.99728 * 354.14979 * 9 7 6 19 19 C 1.52995 * 109.47401 * 273.16453 * 18 9 7 20 20 O 1.42898 * 109.47085 * 65.00148 * 19 18 9 21 21 C 1.42906 * 113.99796 * 180.02562 * 20 19 18 22 22 O 1.33962 * 125.60954 * 270.31518 * 3 2 1 23 23 H 1.08999 * 109.47078 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47252 * 299.99702 * 1 2 3 25 25 H 1.08992 * 109.47383 * 59.99997 * 1 2 3 26 26 H 1.08992 * 109.47140 * 239.99789 * 2 1 3 27 27 H 1.09002 * 109.46889 * 119.99808 * 2 1 3 28 28 H 1.08007 * 126.43408 * 0.04229 * 4 3 2 29 29 H 1.07997 * 126.65087 * 180.02562 * 5 4 3 30 30 H 0.96993 * 120.00418 * 185.04473 * 13 12 10 31 31 H 1.09004 * 109.47292 * 33.16404 * 18 9 7 32 32 H 1.09000 * 109.46957 * 153.16426 * 18 9 7 33 33 H 1.09007 * 109.47423 * 185.00291 * 19 18 9 34 34 H 1.09000 * 109.47460 * 304.99981 * 19 18 9 35 35 H 1.08998 * 109.47341 * 299.99661 * 21 20 19 36 36 H 1.08997 * 109.47250 * 60.00059 * 21 20 19 37 37 H 1.09000 * 109.46908 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1629 1.0989 5 6 2.7377 3.4178 0.6541 6 6 2.7228 3.3781 -0.7119 7 6 3.1085 4.4701 -1.6094 8 8 3.5754 5.4974 -1.1526 9 7 2.9463 4.3373 -2.9409 10 6 3.1933 5.3981 -3.7694 11 1 3.6300 5.2325 -4.7432 12 6 2.8873 6.6895 -3.3553 13 7 2.0415 6.8799 -2.3681 14 14 3.6790 8.1542 -4.2024 15 1 2.8302 8.5851 -5.3422 16 1 3.8133 9.2725 -3.2347 17 1 5.0228 7.7692 -4.7036 18 6 2.5058 3.0574 -3.5010 19 6 3.7222 2.1631 -3.7483 20 8 4.3362 1.8379 -2.4996 21 6 5.4889 1.0018 -2.6190 22 8 2.2867 2.1582 -1.0891 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.1842 1.8488 2.1263 29 1 3.0332 4.2532 1.2715 30 1 1.7718 7.7798 -2.1272 31 1 1.8308 2.5668 -2.7996 32 1 1.9861 3.2327 -4.4430 33 1 3.4046 1.2470 -4.2465 34 1 4.4384 2.6900 -4.3790 35 1 5.2083 0.0617 -3.0938 36 1 6.2415 1.5050 -3.2260 37 1 5.8964 0.8013 -1.6281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316896283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:22 Heat of formation + Delta-G solvation = -45.702987 kcal Electronic energy + Delta-G solvation = -21672.708290 eV Core-core repulsion = 18418.189685 eV Total energy + Delta-G solvation = -3254.518604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.75765 -38.20480 -37.00270 -34.22543 -33.82500 -31.99917 -31.89973 -28.79817 -28.20191 -25.86184 -25.08537 -23.44521 -22.12410 -21.18207 -20.13706 -19.36178 -17.23312 -16.35164 -15.79973 -15.68672 -15.07112 -14.90420 -14.70430 -14.24386 -14.12616 -13.79437 -13.22167 -12.67721 -12.57518 -12.40547 -12.16954 -11.93949 -11.89224 -11.53965 -11.36102 -11.29624 -11.04356 -10.86440 -10.76335 -10.60402 -10.44414 -10.12310 -9.16925 -9.12860 -8.90029 -8.23649 -7.53290 -7.12302 -6.13249 -3.81274 2.21410 3.19538 3.30610 3.39712 3.41926 3.61429 4.25208 4.36406 4.88188 4.93679 5.06954 5.24524 5.33196 5.38487 5.54500 5.62020 5.65586 5.73369 5.77219 5.86494 5.87508 5.94210 5.96130 6.02309 6.14816 6.25139 6.30665 6.52507 6.57381 6.67776 6.99882 7.25685 7.54759 7.68666 7.86046 8.22630 8.99842 9.18792 9.60896 10.30923 10.94807 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.007146 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.226773 B = 3917.272958 C = 4457.732212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.034 4.034 4 C -0.215 4.215 5 C -0.183 4.183 6 C 0.004 3.996 7 C 0.544 3.456 8 O -0.517 6.517 9 N -0.436 5.436 10 C -0.345 4.345 11 H 0.084 0.916 12 C 0.062 3.938 13 N -0.816 5.816 14 Si 0.918 3.082 15 H -0.282 1.282 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.098 3.902 19 C 0.050 3.950 20 O -0.369 6.369 21 C 0.035 3.965 22 O -0.139 6.139 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.267 0.733 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 -13.937 0.941 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 C -0.086 4.086 4 C -0.234 4.234 5 C -0.204 4.204 6 C -0.050 4.050 7 C 0.331 3.669 8 O -0.395 6.395 9 N -0.156 5.156 10 C -0.471 4.471 11 H 0.101 0.899 12 C -0.150 4.150 13 N -0.450 5.450 14 Si 0.745 3.255 15 H -0.208 1.208 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.026 4.026 19 C -0.028 4.028 20 O -0.288 6.288 21 C -0.062 4.062 22 O -0.035 6.035 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.154 0.846 29 H 0.161 0.839 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.539 -13.275 1.177 13.338 hybrid contribution 0.489 0.603 -0.373 0.861 sum -0.051 -12.672 0.804 12.698 Atomic orbital electron populations 1.21790 0.94590 1.01546 1.02738 1.19931 0.95803 0.88423 1.03222 1.22448 1.05599 0.95042 0.85481 1.21275 1.08756 0.94843 0.98531 1.21608 1.06552 0.98568 0.93662 1.23040 1.02687 0.84307 0.94936 1.16172 0.84527 0.84469 0.81694 1.90678 1.46674 1.27413 1.74771 1.43107 1.58724 1.09022 1.04718 1.19078 1.43281 0.84652 1.00103 0.89871 1.25199 0.95053 0.98948 0.95789 1.69859 1.26690 1.22520 1.25890 0.86119 0.79833 0.81293 0.78301 1.20818 1.20858 1.19614 1.21837 0.94358 0.86122 1.00300 1.23016 0.96348 0.97192 0.86225 1.88068 1.42487 1.68944 1.29251 1.22617 0.88701 0.93183 1.01740 1.84328 1.63718 1.22511 1.32917 0.92272 0.92350 0.92237 0.90582 0.89783 0.84567 0.83868 0.92315 0.89919 0.89677 0.93936 0.93319 0.94998 0.94711 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.90 37.16 0.37 -1.27 16 2 C -0.04 -0.45 6.47 -27.88 -0.18 -0.63 16 3 C -0.03 -0.59 6.57 -35.40 -0.23 -0.82 16 4 C -0.21 -3.86 10.77 -39.89 -0.43 -4.29 16 5 C -0.18 -4.02 10.63 -39.37 -0.42 -4.44 16 6 C 0.00 0.09 5.96 -36.82 -0.22 -0.13 16 7 C 0.54 15.21 6.39 -12.92 -0.08 15.13 16 8 O -0.52 -16.35 14.16 5.15 0.07 -16.27 16 9 N -0.44 -11.47 2.56 -116.36 -0.30 -11.77 16 10 C -0.34 -9.57 9.31 -15.02 -0.14 -9.71 16 11 H 0.08 2.16 7.90 -52.49 -0.41 1.75 16 12 C 0.06 1.75 4.37 -17.45 -0.08 1.68 16 13 N -0.82 -24.67 11.15 55.50 0.62 -24.05 16 14 Si 0.92 21.97 29.60 -169.99 -5.03 16.94 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 18 C 0.10 2.04 5.64 -4.05 -0.02 2.02 16 19 C 0.05 0.90 6.26 37.15 0.23 1.13 16 20 O -0.37 -7.07 7.45 -57.04 -0.42 -7.49 16 21 C 0.03 0.51 11.01 101.05 1.11 1.62 16 22 O -0.14 -2.87 5.42 -16.93 -0.09 -2.96 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.14 2.01 8.06 -52.48 -0.42 1.58 16 29 H 0.14 3.14 8.06 -52.49 -0.42 2.72 16 30 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.08 1.72 4.96 -51.93 -0.26 1.46 16 32 H 0.09 1.63 8.01 -51.93 -0.42 1.21 16 33 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 311.66 15.07 4.70 4.70 Total: -1.00 -34.40 311.66 -5.84 -40.24 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.30 Total: 0.37 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.09 Total: 0.29 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.32 Total: -35.81 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.44 Total: -26.73 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.40 -5.84 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316896283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.459 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds