Wall clock time and date at job start Mon Mar 30 2020 04:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 109.47020 * 2 1 4 4 C 1.35164 * 125.61007 * 89.99582 * 3 2 1 5 5 C 1.40323 * 107.12828 * 180.02562 * 4 3 2 6 6 C 1.36666 * 106.70457 * 0.02562 * 5 4 3 7 7 C 1.46511 * 125.99823 * 180.02562 * 6 5 4 8 8 O 1.21739 * 120.00260 * 5.29417 * 7 6 5 9 9 N 1.34785 * 120.00134 * 185.30034 * 7 6 5 10 10 C 1.36851 * 119.99944 * 174.15262 * 9 7 6 11 11 H 1.08002 * 119.99668 * 144.04921 * 10 9 7 12 12 C 1.39027 * 120.00044 * 324.32581 * 10 9 7 13 13 N 1.31383 * 120.00243 * 340.92651 * 12 10 9 14 14 Si 1.86799 * 119.99857 * 160.92178 * 12 10 9 15 15 H 1.48503 * 109.47191 * 90.00135 * 14 12 10 16 16 H 1.48499 * 109.47030 * 209.99881 * 14 12 10 17 17 H 1.48501 * 109.47057 * 329.99728 * 14 12 10 18 18 C 1.46492 * 119.99728 * 354.14979 * 9 7 6 19 19 C 1.52995 * 109.47401 * 273.16453 * 18 9 7 20 20 O 1.42898 * 109.47085 * 65.00148 * 19 18 9 21 21 C 1.42906 * 113.99796 * 180.02562 * 20 19 18 22 22 O 1.33962 * 125.60954 * 270.31518 * 3 2 1 23 23 H 1.08999 * 109.47078 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47252 * 299.99702 * 1 2 3 25 25 H 1.08992 * 109.47383 * 59.99997 * 1 2 3 26 26 H 1.08992 * 109.47140 * 239.99789 * 2 1 3 27 27 H 1.09002 * 109.46889 * 119.99808 * 2 1 3 28 28 H 1.08007 * 126.43408 * 0.04229 * 4 3 2 29 29 H 1.07997 * 126.65087 * 180.02562 * 5 4 3 30 30 H 0.96993 * 120.00418 * 185.04473 * 13 12 10 31 31 H 1.09004 * 109.47292 * 33.16404 * 18 9 7 32 32 H 1.09000 * 109.46957 * 153.16426 * 18 9 7 33 33 H 1.09007 * 109.47423 * 185.00291 * 19 18 9 34 34 H 1.09000 * 109.47460 * 304.99981 * 19 18 9 35 35 H 1.08998 * 109.47341 * 299.99661 * 21 20 19 36 36 H 1.08997 * 109.47250 * 60.00059 * 21 20 19 37 37 H 1.09000 * 109.46908 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1629 1.0989 5 6 2.7377 3.4178 0.6541 6 6 2.7228 3.3781 -0.7119 7 6 3.1085 4.4701 -1.6094 8 8 3.5754 5.4974 -1.1526 9 7 2.9463 4.3373 -2.9409 10 6 3.1933 5.3981 -3.7694 11 1 3.6300 5.2325 -4.7432 12 6 2.8873 6.6895 -3.3553 13 7 2.0415 6.8799 -2.3681 14 14 3.6790 8.1542 -4.2024 15 1 2.8302 8.5851 -5.3422 16 1 3.8133 9.2725 -3.2347 17 1 5.0228 7.7692 -4.7036 18 6 2.5058 3.0574 -3.5010 19 6 3.7222 2.1631 -3.7483 20 8 4.3362 1.8379 -2.4996 21 6 5.4889 1.0018 -2.6190 22 8 2.2867 2.1582 -1.0891 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.1842 1.8488 2.1263 29 1 3.0332 4.2532 1.2715 30 1 1.7718 7.7798 -2.1272 31 1 1.8308 2.5668 -2.7996 32 1 1.9861 3.2327 -4.4430 33 1 3.4046 1.2470 -4.2465 34 1 4.4384 2.6900 -4.3790 35 1 5.2083 0.0617 -3.0938 36 1 6.2415 1.5050 -3.2260 37 1 5.8964 0.8013 -1.6281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316896283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:21 Heat of formation + Delta-G solvation = -68.034052 kcal Electronic energy + Delta-G solvation = -21673.676638 eV Core-core repulsion = 18418.189685 eV Total energy + Delta-G solvation = -3255.486952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.34477 -40.07475 -38.53543 -36.17232 -34.98074 -34.00186 -33.47992 -30.44358 -29.76094 -27.19523 -26.87586 -24.83138 -23.65028 -22.84767 -21.63867 -21.11517 -19.15357 -18.06694 -17.35291 -17.17356 -16.70214 -16.49230 -16.28826 -15.83538 -15.61405 -15.11382 -14.92611 -14.35608 -13.96809 -13.86812 -13.80137 -13.50409 -13.21917 -13.10850 -13.01161 -12.69615 -12.68179 -12.46067 -12.32907 -12.13038 -11.89520 -11.74008 -10.96390 -10.70943 -10.46325 -10.35732 -9.22615 -9.11519 -8.25553 -5.97680 0.55017 1.37554 1.46442 1.53812 1.65897 2.05693 2.32619 2.83595 3.02394 3.13491 3.32629 3.84096 4.15107 4.20061 4.28600 4.34349 4.40194 4.46852 4.54289 4.58977 4.64760 4.67901 4.73161 4.85469 4.89806 4.97916 5.02152 5.09130 5.22620 5.33758 5.41699 5.45288 5.75089 6.08148 6.31578 6.41247 6.91647 7.16357 7.55692 8.26687 8.83742 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.007146 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.226773 B = 3917.272958 C = 4457.732212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.035 4.035 3 C -0.012 4.012 4 C -0.221 4.221 5 C -0.186 4.186 6 C -0.039 4.039 7 C 0.533 3.467 8 O -0.576 6.576 9 N -0.448 5.448 10 C -0.363 4.363 11 H 0.095 0.905 12 C 0.008 3.992 13 N -0.859 5.859 14 Si 0.984 3.016 15 H -0.258 1.258 16 H -0.294 1.294 17 H -0.265 1.265 18 C 0.093 3.907 19 C 0.059 3.941 20 O -0.401 6.401 21 C 0.030 3.970 22 O -0.139 6.139 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.174 0.826 29 H 0.131 0.869 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 -17.055 0.590 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.064 4.064 4 C -0.240 4.240 5 C -0.208 4.208 6 C -0.092 4.092 7 C 0.322 3.678 8 O -0.459 6.459 9 N -0.166 5.166 10 C -0.490 4.490 11 H 0.113 0.887 12 C -0.199 4.199 13 N -0.495 5.495 14 Si 0.807 3.193 15 H -0.183 1.183 16 H -0.220 1.220 17 H -0.189 1.189 18 C -0.030 4.030 19 C -0.018 4.018 20 O -0.320 6.320 21 C -0.066 4.066 22 O -0.034 6.034 23 H 0.110 0.890 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.134 0.866 28 H 0.191 0.809 29 H 0.149 0.851 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.773 -16.445 0.773 16.482 hybrid contribution 0.533 1.347 -0.187 1.461 sum -0.240 -15.098 0.586 15.112 Atomic orbital electron populations 1.21787 0.93390 1.03426 1.01859 1.20266 0.96601 0.84849 1.05501 1.23600 1.01982 0.96492 0.84316 1.21602 1.08734 0.92953 1.00686 1.21837 1.05736 1.00009 0.93199 1.22300 1.06845 0.85335 0.94708 1.16695 0.83744 0.84810 0.82543 1.90603 1.49255 1.29980 1.76061 1.43351 1.58291 1.10499 1.04501 1.19515 1.43266 0.85581 1.00653 0.88698 1.26175 0.95227 1.01987 0.96495 1.69996 1.28708 1.22581 1.28183 0.85113 0.79327 0.77284 0.77543 1.18294 1.22045 1.18944 1.22076 0.96110 0.84364 1.00471 1.22886 0.94733 0.98162 0.86066 1.88029 1.43992 1.70110 1.29875 1.22799 0.87445 0.93799 1.02557 1.84286 1.63589 1.21443 1.34126 0.89043 0.92552 0.93894 0.89231 0.86560 0.80859 0.85144 0.92850 0.89893 0.88436 0.89675 0.94351 0.91932 0.94782 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.90 71.98 0.71 -1.93 16 2 C -0.04 -0.70 6.47 29.85 0.19 -0.51 16 3 C -0.01 -0.37 6.57 24.98 0.16 -0.21 16 4 C -0.22 -7.50 10.77 22.07 0.24 -7.26 16 5 C -0.19 -8.35 10.63 22.41 0.24 -8.11 16 6 C -0.04 -1.91 5.96 24.06 0.14 -1.77 16 7 C 0.53 31.13 6.39 86.40 0.55 31.68 16 8 O -0.58 -38.61 14.16 -4.47 -0.06 -38.68 16 9 N -0.45 -24.25 2.56 -640.25 -1.64 -25.89 16 10 C -0.36 -20.70 9.31 84.10 0.78 -19.92 16 11 H 0.10 4.99 7.90 -2.91 -0.02 4.97 16 12 C 0.01 0.47 4.37 84.95 0.37 0.84 16 13 N -0.86 -54.46 11.15 21.68 0.24 -54.22 16 14 Si 0.98 46.31 29.60 68.60 2.03 48.34 16 15 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 C 0.09 3.85 5.64 86.38 0.49 4.33 16 19 C 0.06 2.03 6.26 71.98 0.45 2.48 16 20 O -0.40 -14.83 7.45 -128.13 -0.95 -15.79 16 21 C 0.03 0.82 11.01 113.37 1.25 2.07 16 22 O -0.14 -5.61 5.42 15.38 0.08 -5.52 16 23 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.13 6.03 8.06 -2.91 -0.02 6.00 16 30 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 31 H 0.08 3.43 4.96 -2.41 -0.01 3.42 16 32 H 0.10 3.68 8.01 -2.39 -0.02 3.67 16 33 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -79.92 311.66 6.34 -73.59 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.05 Total: 16.46 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 5.58 Total: 1.70 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.40 Total: -80.10 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -0.93 Total: -59.99 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -79.92 6.34 -73.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316896283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.552 kcal (2) G-P(sol) polarization free energy of solvation -79.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds