Wall clock time and date at job start Mon Mar 30 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99925 * 2 1 4 4 H 1.48496 * 109.47625 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46833 * 299.99829 * 3 2 1 6 6 H 1.48505 * 109.47219 * 59.99385 * 3 2 1 7 7 C 1.37873 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99945 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47334 * 179.97438 * 9 7 2 11 11 C 1.42902 * 114.00279 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47392 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47220 * 65.00224 * 12 11 10 14 14 C 1.46894 * 111.00559 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 C 1.38224 * 120.01147 * 99.99850 * 16 15 14 18 18 C 1.38218 * 120.02596 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05109 * 0.02732 * 18 17 16 20 20 C 1.38170 * 120.02397 * 359.97438 * 19 18 17 21 21 C 1.38432 * 120.01370 * 279.72550 * 16 15 14 22 22 F 1.35102 * 120.02704 * 359.97438 * 21 16 15 23 23 H 0.96995 * 120.00211 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47588 * 59.99459 * 9 7 2 25 25 H 1.09001 * 109.47292 * 299.99564 * 9 7 2 26 26 H 1.09011 * 109.46960 * 59.99957 * 11 10 9 27 27 H 1.09000 * 109.47131 * 300.00401 * 11 10 9 28 28 H 1.09003 * 109.46989 * 305.00443 * 12 11 10 29 29 H 1.09005 * 109.47424 * 185.00219 * 12 11 10 30 30 H 1.00899 * 110.99900 * 56.04218 * 13 12 11 31 31 H 1.09002 * 109.47104 * 59.99767 * 14 13 12 32 32 H 1.08998 * 109.46828 * 300.00600 * 14 13 12 33 33 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 34 34 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 35 35 H 1.08002 * 119.98697 * 359.97438 * 17 16 15 36 36 H 1.07999 * 119.97411 * 180.02562 * 18 17 16 37 37 H 1.07995 * 119.98601 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.01264 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.5653 -4.8754 0.0011 12 6 2.6483 -5.9561 0.0004 13 7 3.4092 -5.8876 1.2551 14 6 4.4608 -6.9127 1.2898 15 6 5.2294 -6.8106 2.6087 16 6 6.3078 -7.8627 2.6445 17 6 7.6151 -7.5230 2.3509 18 6 8.6045 -8.4876 2.3841 19 6 8.2877 -9.7934 2.7105 20 6 6.9816 -10.1353 3.0043 21 6 5.9904 -9.1685 2.9769 22 9 4.7140 -9.5004 3.2699 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 0.9448 -4.9827 -0.8887 27 1 0.9454 -4.9822 0.8913 28 1 3.3212 -5.7955 -0.8419 29 1 2.1822 -6.9375 -0.0887 30 1 2.7979 -5.9691 2.0536 31 1 5.1462 -6.7584 0.4564 32 1 4.0077 -7.9008 1.2092 33 1 4.5437 -6.9651 3.4418 34 1 5.6825 -5.8225 2.6895 35 1 7.8636 -6.5035 2.0954 36 1 9.6257 -8.2212 2.1550 37 1 9.0615 -10.5463 2.7357 38 1 6.7343 -11.1553 3.2587 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385264304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:55 Heat of formation + Delta-G solvation = -79.296303 kcal Electronic energy + Delta-G solvation = -19052.157920 eV Core-core repulsion = 15808.555390 eV Total energy + Delta-G solvation = -3243.602530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.09713 -39.38530 -37.24527 -35.83425 -33.27484 -32.52431 -30.83385 -29.64963 -27.42558 -26.21124 -23.13988 -22.95797 -22.24910 -21.57365 -21.07064 -17.80113 -16.76954 -16.38557 -16.17511 -15.97648 -15.74627 -15.24995 -14.96452 -14.45129 -14.23400 -14.20324 -13.85728 -13.49233 -13.07034 -12.92658 -12.73042 -12.49865 -11.96545 -11.78786 -11.65924 -11.28931 -11.09722 -11.04912 -10.75020 -10.70519 -10.41675 -9.94516 -9.23872 -9.01990 -8.89620 -8.75736 -8.18539 -8.07930 -6.05631 -4.06371 0.87156 0.91978 3.29235 3.32881 3.39057 3.46328 4.01007 4.15402 4.40089 4.46176 4.58229 4.78123 4.90449 4.93325 5.04759 5.11736 5.21599 5.30890 5.47250 5.53152 5.64459 5.70045 5.72126 5.81578 5.90588 5.99646 6.07820 6.09086 6.13328 6.21579 6.34243 6.61944 7.15369 7.20409 7.49663 7.57572 7.86738 8.22837 8.67859 9.08921 9.58376 11.06189 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.002907 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.142752 B = 9629.968509 C =10294.715037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.066 3.934 13 N -0.676 5.676 14 C 0.067 3.933 15 C -0.081 4.081 16 C -0.109 4.109 17 C -0.086 4.086 18 C -0.129 4.129 19 C -0.099 4.099 20 C -0.155 4.155 21 C 0.098 3.902 22 F -0.138 7.138 23 H 0.262 0.738 24 H 0.002 0.998 25 H 0.003 0.997 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.340 0.660 31 H 0.073 0.927 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.193 -20.901 5.477 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.118 3.882 10 O -0.300 6.300 11 C -0.013 4.013 12 C -0.063 4.063 13 N -0.307 5.307 14 C -0.062 4.062 15 C -0.119 4.119 16 C -0.110 4.110 17 C -0.104 4.104 18 C -0.147 4.147 19 C -0.117 4.117 20 C -0.174 4.174 21 C 0.078 3.922 22 F -0.117 7.117 23 H 0.072 0.928 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.601 -20.259 5.249 25.518 hybrid contribution -0.797 -0.101 0.209 0.830 sum 13.804 -20.361 5.459 25.198 Atomic orbital electron populations 1.69977 1.06108 1.26934 1.51030 1.24960 0.94970 0.99440 0.95311 0.86289 0.80079 0.82639 0.77534 1.19444 1.20925 1.20898 1.21111 0.94141 0.89342 1.50127 0.91447 1.20191 0.88882 0.83960 0.95128 1.87953 1.34658 1.12352 1.95025 1.22232 0.93857 0.86322 0.98908 1.21975 0.95726 0.95662 0.92967 1.60296 1.16313 1.49620 1.04506 1.21869 0.94423 0.92750 0.97179 1.20549 0.95416 0.97510 0.98393 1.20010 0.96301 0.93275 1.01424 1.21082 0.91221 1.00347 0.97790 1.21242 0.99812 0.93101 1.00566 1.21000 0.95488 0.96741 0.98491 1.21143 0.92989 0.99400 1.03864 1.17625 0.79125 0.93463 1.01941 1.91494 1.36316 1.93007 1.90851 0.92807 0.98010 0.97884 0.94171 0.94756 0.90388 0.94875 0.84244 0.90871 0.95726 0.90689 0.89055 0.84650 0.85306 0.85200 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.19 5.44 5.69 36.00 0.20 5.65 16 10 O -0.38 -9.50 10.27 -35.23 -0.36 -9.86 16 11 C 0.07 1.24 6.22 37.16 0.23 1.47 16 12 C 0.07 1.02 6.07 -3.83 -0.02 1.00 16 13 N -0.68 -10.29 6.45 -113.78 -0.73 -11.02 16 14 C 0.07 0.85 5.67 -3.83 -0.02 0.82 16 15 C -0.08 -0.92 5.33 -27.88 -0.15 -1.06 16 16 C -0.11 -1.14 5.14 -104.55 -0.54 -1.67 16 17 C -0.09 -0.77 9.67 -39.59 -0.38 -1.15 16 18 C -0.13 -0.97 10.04 -39.58 -0.40 -1.37 16 19 C -0.10 -0.72 10.04 -39.59 -0.40 -1.12 16 20 C -0.16 -1.33 10.03 -39.52 -0.40 -1.73 16 21 C 0.10 1.04 7.24 -39.42 -0.29 0.75 16 22 F -0.14 -1.63 16.66 2.25 0.04 -1.59 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 24 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 26 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.34 4.87 8.73 -39.29 -0.34 4.53 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.85 7.94 -51.93 -0.41 0.44 16 34 H 0.09 1.05 8.01 -51.93 -0.42 0.64 16 35 H 0.14 1.05 8.04 -52.49 -0.42 0.63 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -32.85 331.71 -8.71 -41.56 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.79 Total: -1.95 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.58 Total: -12.62 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.00 Total: -37.75 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.36 Total: -9.86 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.85 -8.71 -41.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385264304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.734 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds