Wall clock time and date at job start Mon Mar 30 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35992 * 116.99690 * 2 1 4 4 C 1.38691 * 119.96720 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.10199 * 179.97438 * 4 3 2 6 6 C 1.38675 * 120.03103 * 0.27905 * 5 4 3 7 7 N 1.40229 * 120.03079 * 179.69749 * 6 5 4 8 8 C 1.39277 * 119.93436 * 359.47190 * 6 5 4 9 9 O 1.36007 * 120.05362 * 180.25610 * 8 6 5 10 10 C 1.42900 * 116.99735 * 180.26940 * 9 8 6 11 11 C 1.53007 * 109.46800 * 179.97438 * 10 9 8 12 12 O 1.42905 * 109.46595 * 65.00421 * 11 10 9 13 13 C 1.42905 * 113.99401 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46664 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00091 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99742 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99884 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99918 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46986 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47273 * 119.99941 * 18 16 14 21 21 H 1.48502 * 109.47191 * 240.00352 * 18 16 14 22 22 C 1.38498 * 119.89456 * 0.52520 * 8 6 5 23 23 H 1.08998 * 109.47413 * 59.99698 * 1 2 3 24 24 H 1.09000 * 109.46791 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46961 * 299.99429 * 1 2 3 26 26 H 1.08001 * 119.94590 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97896 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00352 * 0.02562 * 7 6 5 29 29 H 0.97001 * 119.99975 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47483 * 299.99539 * 10 9 8 31 31 H 1.09004 * 109.47162 * 60.00194 * 10 9 8 32 32 H 1.08998 * 109.46975 * 184.99691 * 11 10 9 33 33 H 1.08996 * 109.47544 * 305.00226 * 11 10 9 34 34 H 1.08997 * 109.47145 * 299.99663 * 13 12 11 35 35 H 1.09003 * 109.46929 * 60.00271 * 13 12 11 36 36 H 0.97001 * 120.00144 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.02136 * 179.75642 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2903 2.3744 0.0005 5 6 1.9149 3.6076 0.0011 6 6 3.2995 3.6842 -0.0048 7 7 3.9331 4.9352 -0.0106 8 6 4.0602 2.5176 -0.0001 9 8 5.4183 2.5900 -0.0005 10 6 6.1339 1.3530 -0.0015 11 6 7.6379 1.6340 -0.0025 12 8 8.0024 2.2806 1.2186 13 6 9.3942 2.5885 1.3202 14 6 9.6640 3.2648 2.6396 15 1 8.8538 3.4414 3.3315 16 6 10.9454 3.6571 2.9639 17 7 11.9320 3.4416 2.1215 18 14 11.2800 4.4948 4.5996 19 1 10.0108 4.6197 5.3605 20 1 12.2487 3.6851 5.3814 21 1 11.8462 5.8460 4.3572 22 6 3.4314 1.2835 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.2118 2.3162 0.0005 27 1 1.3241 4.5117 0.0011 28 1 3.4028 5.7475 -0.0102 29 1 4.9016 4.9883 -0.0143 30 1 5.8715 0.7807 0.8882 31 1 5.8707 0.7817 -0.8918 32 1 8.1829 0.6944 -0.0928 33 1 7.8863 2.2804 -0.8442 34 1 9.9753 1.6685 1.2575 35 1 9.6793 3.2547 0.5058 36 1 12.8336 3.7173 2.3497 37 1 4.0193 0.3776 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385877247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:05 Heat of formation + Delta-G solvation = -98.025341 kcal Electronic energy + Delta-G solvation = -19621.992501 eV Core-core repulsion = 16365.205029 eV Total energy + Delta-G solvation = -3256.787472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40242 -38.87030 -37.15882 -36.22743 -33.68695 -32.76131 -30.60488 -29.83438 -28.01711 -26.95923 -26.73344 -23.54961 -22.32266 -21.65915 -21.35302 -18.68427 -17.20990 -16.72496 -16.50951 -16.34099 -16.17921 -15.72180 -15.16124 -14.92471 -14.62312 -14.36433 -14.11769 -13.96151 -13.15825 -12.84373 -12.77898 -12.32026 -12.20511 -11.77812 -11.66594 -11.39773 -11.00723 -10.96412 -10.82804 -10.69987 -10.47594 -10.03360 -9.81495 -9.10279 -8.86503 -8.47448 -8.20012 -6.95701 -6.11500 -4.12872 1.38212 1.66374 3.20239 3.29341 3.35776 3.42258 3.42802 3.85118 4.08095 4.33685 4.72983 4.79560 4.95932 5.00704 5.02917 5.20348 5.25195 5.30078 5.33998 5.46312 5.53232 5.66600 5.88931 5.92893 5.97154 6.12288 6.18275 6.38784 6.58902 7.06735 7.35986 7.37119 7.41016 7.79142 7.80762 7.99268 8.13746 8.54478 9.00595 9.51975 11.00150 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.003440 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.826455 B = 8138.559423 C = 8466.041576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.104 3.896 4 C -0.200 4.200 5 C -0.136 4.136 6 C 0.164 3.836 7 N -0.875 5.875 8 C 0.104 3.896 9 O -0.299 6.299 10 C 0.067 3.933 11 C 0.063 3.937 12 O -0.389 6.389 13 C 0.194 3.806 14 C -0.513 4.513 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.198 4.198 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.394 0.606 29 H 0.407 0.593 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.263 0.737 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.540 -3.217 -7.083 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.058 3.942 4 C -0.220 4.220 5 C -0.159 4.159 6 C 0.060 3.940 7 N -0.418 5.418 8 C 0.054 3.946 9 O -0.212 6.212 10 C -0.008 4.008 11 C -0.015 4.015 12 O -0.309 6.309 13 C 0.120 3.880 14 C -0.552 4.552 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.218 4.218 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.222 0.778 29 H 0.237 0.763 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.261 -3.232 -6.952 22.601 hybrid contribution 0.398 0.565 0.571 0.896 sum -20.863 -2.668 -6.381 21.980 Atomic orbital electron populations 1.22966 0.78963 1.03424 1.01098 1.86042 1.20833 1.27086 1.89556 1.18402 0.91351 0.84008 1.00469 1.20783 0.99421 0.91615 1.10135 1.20125 0.91277 0.97668 1.06843 1.17085 0.90803 0.84698 1.01404 1.42315 1.09878 1.03528 1.86069 1.18217 0.83272 0.91832 1.01230 1.86144 1.13767 1.32847 1.88440 1.22933 0.91548 0.84935 1.01356 1.22287 0.91231 0.97544 0.90408 1.87931 1.29500 1.78659 1.34837 1.20233 0.75533 0.94756 0.97502 1.21097 0.93952 1.38095 1.02012 0.91459 1.24952 0.95652 0.96084 0.97854 1.69968 1.00437 1.47514 1.35918 0.86280 0.78371 0.78950 0.82904 1.19450 1.20830 1.20834 1.20203 0.92558 0.97089 1.11986 0.92958 0.88679 0.92904 0.85757 0.85532 0.77843 0.76348 0.91279 0.91337 0.92179 0.93353 0.97657 0.97570 0.92702 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.91 10.50 -19.72 -0.21 -4.12 16 3 C 0.10 1.37 6.68 -39.25 -0.26 1.11 16 4 C -0.20 -2.31 9.03 -39.42 -0.36 -2.66 16 5 C -0.14 -1.59 9.89 -39.42 -0.39 -1.98 16 6 C 0.16 2.28 6.77 -83.47 -0.57 1.71 16 7 N -0.88 -10.82 9.10 32.55 0.30 -10.52 16 8 C 0.10 1.61 6.70 -39.10 -0.26 1.35 16 9 O -0.30 -5.14 9.34 -24.62 -0.23 -5.37 16 10 C 0.07 1.05 5.12 37.16 0.19 1.24 16 11 C 0.06 1.17 6.32 37.16 0.23 1.40 16 12 O -0.39 -9.57 10.29 -40.09 -0.41 -9.98 16 13 C 0.19 5.36 5.69 36.01 0.20 5.57 16 14 C -0.51 -15.30 9.43 -34.44 -0.32 -15.63 16 15 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.91 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.20 -2.85 8.97 -39.32 -0.35 -3.20 16 23 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.12 1.10 6.28 -52.49 -0.33 0.77 16 27 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.39 3.69 8.85 -40.82 -0.36 3.33 16 29 H 0.41 5.54 8.19 -40.82 -0.33 5.21 16 30 H 0.07 1.07 7.66 -51.93 -0.40 0.67 16 31 H 0.07 0.86 7.66 -51.93 -0.40 0.46 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.14 1.81 6.30 -52.49 -0.33 1.47 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -33.60 318.41 -6.06 -39.66 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.03 Total: 3.15 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -0.99 Total: -8.34 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 1.03 Total: -36.79 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.85 Total: -19.47 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.60 -6.06 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385877247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.367 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds