Wall clock time and date at job start Mon Mar 30 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35992 * 116.99690 * 2 1 4 4 C 1.38691 * 119.96720 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.10199 * 179.97438 * 4 3 2 6 6 C 1.38675 * 120.03103 * 0.27905 * 5 4 3 7 7 N 1.40229 * 120.03079 * 179.69749 * 6 5 4 8 8 C 1.39277 * 119.93436 * 359.47190 * 6 5 4 9 9 O 1.36007 * 120.05362 * 180.25610 * 8 6 5 10 10 C 1.42900 * 116.99735 * 180.26940 * 9 8 6 11 11 C 1.53007 * 109.46800 * 179.97438 * 10 9 8 12 12 O 1.42905 * 109.46595 * 65.00421 * 11 10 9 13 13 C 1.42905 * 113.99401 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46664 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00091 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99742 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99884 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99918 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46986 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47273 * 119.99941 * 18 16 14 21 21 H 1.48502 * 109.47191 * 240.00352 * 18 16 14 22 22 C 1.38498 * 119.89456 * 0.52520 * 8 6 5 23 23 H 1.08998 * 109.47413 * 59.99698 * 1 2 3 24 24 H 1.09000 * 109.46791 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46961 * 299.99429 * 1 2 3 26 26 H 1.08001 * 119.94590 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97896 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00352 * 0.02562 * 7 6 5 29 29 H 0.97001 * 119.99975 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47483 * 299.99539 * 10 9 8 31 31 H 1.09004 * 109.47162 * 60.00194 * 10 9 8 32 32 H 1.08998 * 109.46975 * 184.99691 * 11 10 9 33 33 H 1.08996 * 109.47544 * 305.00226 * 11 10 9 34 34 H 1.08997 * 109.47145 * 299.99663 * 13 12 11 35 35 H 1.09003 * 109.46929 * 60.00271 * 13 12 11 36 36 H 0.97001 * 120.00144 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.02136 * 179.75642 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2903 2.3744 0.0005 5 6 1.9149 3.6076 0.0011 6 6 3.2995 3.6842 -0.0048 7 7 3.9331 4.9352 -0.0106 8 6 4.0602 2.5176 -0.0001 9 8 5.4183 2.5900 -0.0005 10 6 6.1339 1.3530 -0.0015 11 6 7.6379 1.6340 -0.0025 12 8 8.0024 2.2806 1.2186 13 6 9.3942 2.5885 1.3202 14 6 9.6640 3.2648 2.6396 15 1 8.8538 3.4414 3.3315 16 6 10.9454 3.6571 2.9639 17 7 11.9320 3.4416 2.1215 18 14 11.2800 4.4948 4.5996 19 1 10.0108 4.6197 5.3605 20 1 12.2487 3.6851 5.3814 21 1 11.8462 5.8460 4.3572 22 6 3.4314 1.2835 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.2118 2.3162 0.0005 27 1 1.3241 4.5117 0.0011 28 1 3.4028 5.7475 -0.0102 29 1 4.9016 4.9883 -0.0143 30 1 5.8715 0.7807 0.8882 31 1 5.8707 0.7817 -0.8918 32 1 8.1829 0.6944 -0.0928 33 1 7.8863 2.2804 -0.8442 34 1 9.9753 1.6685 1.2575 35 1 9.6793 3.2547 0.5058 36 1 12.8336 3.7173 2.3497 37 1 4.0193 0.3776 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385877247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:05 Heat of formation + Delta-G solvation = -122.409144 kcal Electronic energy + Delta-G solvation = -19623.049862 eV Core-core repulsion = 16365.205029 eV Total energy + Delta-G solvation = -3257.844833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40618 -39.89803 -38.63717 -37.61473 -34.95862 -34.63514 -31.87763 -31.02715 -29.23746 -28.69010 -27.58008 -24.87821 -24.39988 -22.63714 -22.56110 -19.67967 -18.70837 -18.13422 -17.75248 -17.65977 -17.53966 -16.76012 -16.48861 -16.17702 -16.05015 -15.91258 -15.62666 -15.08259 -14.63853 -13.95903 -13.86958 -13.62958 -13.45353 -13.05084 -12.96423 -12.92367 -12.70374 -12.45654 -12.33354 -11.95297 -11.85723 -11.77219 -11.28060 -10.91137 -10.70795 -10.27864 -9.50243 -8.33939 -7.94494 -6.46106 0.38947 0.67111 1.39076 1.40449 1.55351 2.19015 2.33613 2.50589 2.85915 2.99828 3.09403 3.14378 3.85024 3.99579 4.13041 4.15510 4.23550 4.43474 4.46445 4.48608 4.51062 4.60762 4.64342 4.75215 4.82409 4.84703 5.01658 5.15908 5.20931 5.43812 5.53111 5.63835 5.93885 6.28603 6.49781 6.51813 6.76183 6.79493 7.09458 7.25688 8.78598 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.003440 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.826455 B = 8138.559423 C = 8466.041576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.094 3.906 4 C -0.192 4.192 5 C -0.130 4.130 6 C 0.145 3.855 7 N -0.874 5.874 8 C 0.073 3.927 9 O -0.324 6.324 10 C 0.074 3.926 11 C 0.054 3.946 12 O -0.408 6.408 13 C 0.208 3.792 14 C -0.549 4.549 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.983 3.017 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.211 4.211 23 H 0.066 0.934 24 H 0.115 0.885 25 H 0.063 0.937 26 H 0.156 0.844 27 H 0.157 0.843 28 H 0.407 0.593 29 H 0.399 0.601 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.050 0.950 34 H -0.008 1.008 35 H -0.012 1.012 36 H 0.272 0.728 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.401 -2.908 -6.574 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.047 3.953 4 C -0.211 4.211 5 C -0.153 4.153 6 C 0.042 3.958 7 N -0.417 5.417 8 C 0.024 3.976 9 O -0.238 6.238 10 C -0.001 4.001 11 C -0.023 4.023 12 O -0.328 6.328 13 C 0.133 3.867 14 C -0.587 4.587 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.806 3.194 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.231 4.231 23 H 0.084 0.916 24 H 0.133 0.867 25 H 0.081 0.919 26 H 0.174 0.826 27 H 0.175 0.825 28 H 0.237 0.763 29 H 0.227 0.773 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.009 0.991 35 H 0.005 0.995 36 H 0.080 0.920 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.163 -2.930 -6.464 24.226 hybrid contribution 0.830 0.402 0.326 0.978 sum -22.334 -2.527 -6.138 23.299 Atomic orbital electron populations 1.23296 0.76638 1.05260 1.02218 1.86021 1.23283 1.26726 1.89450 1.18559 0.91207 0.85086 1.00432 1.21166 1.00961 0.90828 1.08143 1.20517 0.90527 0.99072 1.05188 1.17420 0.91779 0.84706 1.01937 1.42297 1.09561 1.03845 1.85993 1.18470 0.82543 0.93017 1.03562 1.86077 1.15114 1.33386 1.89253 1.22889 0.89371 0.84985 1.02867 1.22637 0.93662 0.97898 0.88111 1.87879 1.27463 1.79480 1.37990 1.19861 0.77122 0.93447 0.96255 1.21405 0.94538 1.39767 1.02987 0.92342 1.25949 0.95003 0.96178 1.02002 1.70063 1.01078 1.47778 1.37926 0.85137 0.78432 0.78150 0.77688 1.19062 1.19461 1.19519 1.20316 0.93562 0.96793 1.12422 0.91587 0.86716 0.91874 0.82647 0.82545 0.76303 0.77317 0.91522 0.87953 0.90273 0.93150 0.99067 0.99472 0.91958 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.73 10.50 -93.47 -0.98 -8.71 16 3 C 0.09 2.35 6.68 22.49 0.15 2.50 16 4 C -0.19 -3.92 9.03 22.38 0.20 -3.72 16 5 C -0.13 -2.76 9.89 22.37 0.22 -2.54 16 6 C 0.15 3.95 6.77 38.15 0.26 4.21 16 7 N -0.87 -21.37 9.10 -50.94 -0.46 -21.83 16 8 C 0.07 2.27 6.70 22.58 0.15 2.42 16 9 O -0.32 -11.42 9.34 -88.99 -0.83 -12.26 16 10 C 0.07 2.33 5.12 71.98 0.37 2.69 16 11 C 0.05 2.03 6.32 71.98 0.45 2.48 16 12 O -0.41 -20.72 10.29 -144.34 -1.49 -22.20 16 13 C 0.21 11.93 5.69 71.24 0.41 12.34 16 14 C -0.55 -33.53 9.43 25.60 0.24 -33.29 16 15 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 16 C 0.01 0.42 5.46 84.66 0.46 0.89 16 17 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 18 Si 0.98 45.02 29.54 68.60 2.03 47.05 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.21 -6.01 8.97 22.44 0.20 -5.81 16 23 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 24 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.67 7.66 -2.38 -0.02 0.65 16 26 H 0.16 2.13 6.28 -2.91 -0.02 2.11 16 27 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.41 7.24 8.85 -92.71 -0.82 6.42 16 29 H 0.40 11.14 8.19 -92.71 -0.76 10.38 16 30 H 0.07 2.10 7.66 -2.39 -0.02 2.09 16 31 H 0.10 2.50 7.66 -2.38 -0.02 2.48 16 32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16 37 H 0.14 3.65 6.30 -2.91 -0.02 3.63 16 Total: -1.00 -73.28 318.41 2.30 -70.98 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.48 Total: 19.40 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 4.23 Total: -16.46 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -0.18 Total: -77.79 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -3.30 Total: -43.18 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.28 2.30 -70.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385877247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.430 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds