Wall clock time and date at job start Mon Mar 30 2020 05:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99913 * 2 1 4 4 H 1.48495 * 109.46823 * 239.99710 * 3 2 1 5 5 H 1.48498 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46928 * 119.99941 * 3 2 1 7 7 C 1.37879 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99780 * 172.91787 * 7 2 1 9 9 C 1.50694 * 120.00146 * 352.91553 * 7 2 1 10 10 C 1.53005 * 115.55004 * 84.53485 * 9 7 2 11 11 N 1.46509 * 109.46894 * 39.68228 * 10 9 7 12 12 C 1.34773 * 119.99852 * 181.04886 * 11 10 9 13 13 O 1.21283 * 120.00178 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99689 * 179.97438 * 12 11 10 15 15 H 1.08996 * 109.59722 * 320.29921 * 14 12 11 16 16 C 1.52986 * 109.59544 * 80.75523 * 14 12 11 17 17 N 1.46006 * 110.04285 * 170.06261 * 16 14 12 18 18 C 1.33713 * 122.92753 * 341.84141 * 17 16 14 19 19 O 1.21292 * 118.62597 * 181.68372 * 18 17 16 20 20 C 1.50257 * 122.75281 * 1.68258 * 18 17 16 21 21 N 1.46896 * 109.97606 * 342.80296 * 20 18 17 22 22 C 1.52995 * 117.51963 * 230.23441 * 9 7 2 23 23 C 1.53004 * 117.49964 * 298.86814 * 9 7 2 24 24 H 0.96998 * 119.99671 * 5.03724 * 1 2 3 25 25 H 1.08991 * 109.47277 * 279.68354 * 10 9 7 26 26 H 1.08995 * 109.47382 * 159.67885 * 10 9 7 27 27 H 0.96999 * 119.99867 * 1.04094 * 11 10 9 28 28 H 1.09003 * 109.37626 * 290.23932 * 16 14 12 29 29 H 1.08998 * 109.37671 * 50.00680 * 16 14 12 30 30 H 0.97000 * 118.53631 * 161.81385 * 17 16 14 31 31 H 1.08998 * 109.38449 * 222.64233 * 20 18 17 32 32 H 1.09001 * 109.38436 * 102.95817 * 20 18 17 33 33 H 1.00906 * 110.99928 * 286.93004 * 21 20 18 34 34 H 1.09002 * 117.49858 * 214.96907 * 22 9 7 35 35 H 1.08999 * 117.50209 * 0.02562 * 22 9 7 36 36 H 1.08996 * 117.49687 * 359.97438 * 23 9 7 37 37 H 1.08997 * 117.49504 * 144.99770 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0784 -1.1977 -0.1148 9 6 1.2597 -2.4941 0.1621 10 6 0.6733 -3.0827 -1.1227 11 7 1.6223 -2.8955 -2.2231 12 6 1.3082 -3.3195 -3.4633 13 8 0.2402 -3.8564 -3.6683 14 6 2.2841 -3.1264 -4.5952 15 1 2.7606 -2.1503 -4.5047 16 6 3.3470 -4.2258 -4.5494 17 7 4.1546 -4.1920 -5.7653 18 6 3.7606 -3.5720 -6.8826 19 8 4.4800 -3.6192 -7.8580 20 6 2.4638 -2.8194 -6.9805 21 7 1.5721 -3.2108 -5.8807 22 6 1.7704 -3.4748 1.2195 23 6 0.4722 -2.7008 1.4575 24 1 -0.4849 0.8368 -0.0738 25 1 -0.2625 -2.5769 -1.3601 26 1 0.4855 -4.1471 -0.9821 27 1 2.4766 -2.4664 -2.0591 28 1 3.9906 -4.0708 -3.6834 29 1 2.8593 -5.1972 -4.4682 30 1 5.0155 -4.6390 -5.7624 31 1 1.9848 -3.0462 -7.9329 32 1 2.6615 -1.7490 -6.9225 33 1 1.2010 -4.1374 -6.0283 34 1 1.6887 -4.5393 0.9999 35 1 2.6452 -3.1797 1.7989 36 1 0.4932 -1.8967 2.1930 37 1 -0.4636 -3.2562 1.3943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404146076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:37 Heat of formation + Delta-G solvation = -42.985273 kcal Electronic energy + Delta-G solvation = -20552.034360 eV Core-core repulsion = 17329.926356 eV Total energy + Delta-G solvation = -3222.108004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70202 -39.05797 -37.02375 -36.34232 -33.93058 -33.32543 -32.09366 -30.36859 -26.52843 -25.68936 -25.42117 -23.67322 -21.24794 -20.44866 -19.77167 -19.35612 -17.85086 -16.81366 -16.68150 -16.15451 -15.57524 -15.24515 -14.83453 -14.82015 -14.50151 -14.24418 -13.86011 -13.47309 -13.15965 -12.71706 -12.60180 -12.17749 -11.88686 -11.72858 -11.68246 -11.08849 -11.00326 -10.79398 -10.62047 -10.31410 -9.76477 -9.42549 -9.39403 -9.02939 -8.62608 -8.60512 -8.42835 -8.03626 -6.17807 -4.28223 2.34894 2.80945 3.10019 3.19122 3.26865 3.27987 3.47773 4.15633 4.26101 4.35442 4.60519 4.74620 4.98107 5.09198 5.14812 5.21487 5.32008 5.43624 5.45632 5.95960 6.22573 6.29941 6.40817 6.46064 6.55927 6.63943 6.82261 6.97413 7.01465 7.02985 7.17088 7.30744 7.41066 7.70329 7.91186 8.23390 8.25285 8.73670 8.80249 9.40020 10.89707 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.005238 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.745153 B = 5344.669488 C = 5943.958084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.165 3.835 11 N -0.689 5.689 12 C 0.516 3.484 13 O -0.544 6.544 14 C 0.053 3.947 15 H 0.114 0.886 16 C 0.083 3.917 17 N -0.720 5.720 18 C 0.484 3.516 19 O -0.556 6.556 20 C 0.046 3.954 21 N -0.654 5.654 22 C -0.211 4.211 23 C -0.152 4.152 24 H 0.264 0.736 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.405 0.595 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.401 0.599 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.357 0.643 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 -6.311 -6.689 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.041 3.959 11 N -0.339 5.339 12 C 0.298 3.702 13 O -0.421 6.421 14 C -0.061 4.061 15 H 0.132 0.868 16 C -0.044 4.044 17 N -0.373 5.373 18 C 0.269 3.731 19 O -0.433 6.433 20 C -0.087 4.087 21 N -0.285 5.285 22 C -0.248 4.248 23 C -0.190 4.190 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.241 0.759 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.237 0.763 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.178 0.822 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.605 -5.840 -7.197 10.349 hybrid contribution 1.734 0.290 0.277 1.779 sum 6.338 -5.551 -6.920 10.903 Atomic orbital electron populations 1.69958 1.05959 1.27222 1.47128 1.24982 0.94748 0.98915 0.94026 0.86722 0.79709 0.83236 0.78702 1.20180 1.21230 1.20158 1.20232 0.92842 0.88590 1.52957 0.92168 1.19027 0.98330 0.93977 0.85951 1.20895 0.92084 0.96885 0.86002 1.45960 1.21811 1.58698 1.07421 1.19767 0.87305 0.79736 0.83353 1.90669 1.24184 1.44005 1.83270 1.21891 0.92876 1.00368 0.91014 0.86841 1.22108 0.94387 1.00104 0.87785 1.45601 1.23080 1.56152 1.12474 1.21555 0.89995 0.79260 0.82272 1.90759 1.55725 1.61342 1.35458 1.22332 0.87968 1.01465 0.96896 1.60519 1.33552 1.34983 0.99492 1.23090 0.98441 0.95596 1.07664 1.22502 0.92567 1.01187 1.02740 0.92633 0.91228 0.94408 0.75908 0.88854 0.90526 0.76282 0.86511 0.86813 0.82249 0.91600 0.90399 0.89910 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.95 12.97 55.43 0.72 -22.23 16 2 C 0.08 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 19.45 29.55 -169.99 -5.02 14.43 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.51 -12.05 7.43 -34.44 -0.26 -12.31 16 8 H 0.06 1.38 7.82 -52.48 -0.41 0.97 16 9 C 0.03 0.61 1.71 -155.66 -0.27 0.34 16 10 C 0.16 3.44 5.75 -4.03 -0.02 3.41 16 11 N -0.69 -12.26 5.33 -60.29 -0.32 -12.58 16 12 C 0.52 8.63 7.07 -10.99 -0.08 8.55 16 13 O -0.54 -11.00 16.39 5.56 0.09 -10.91 16 14 C 0.05 0.65 2.89 -68.72 -0.20 0.46 16 15 H 0.11 1.35 8.08 -51.93 -0.42 0.93 16 16 C 0.08 0.80 6.59 -4.32 -0.03 0.78 16 17 N -0.72 -7.18 5.52 -61.06 -0.34 -7.52 16 18 C 0.48 5.84 7.81 -11.67 -0.09 5.75 16 19 O -0.56 -8.69 17.83 5.55 0.10 -8.59 16 20 C 0.05 0.48 6.68 -5.19 -0.03 0.45 16 21 N -0.65 -7.98 6.29 -109.27 -0.69 -8.67 16 22 C -0.21 -4.11 9.88 -26.73 -0.26 -4.37 16 23 C -0.15 -3.28 9.51 -26.72 -0.25 -3.54 16 24 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 25 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 26 H 0.04 0.75 7.94 -51.93 -0.41 0.34 16 27 H 0.40 6.73 7.45 -40.82 -0.30 6.43 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 30 H 0.40 3.53 8.84 -40.82 -0.36 3.16 16 31 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.36 4.29 8.53 -39.29 -0.34 3.95 16 34 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -29.88 316.08 -7.46 -37.35 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -5.18 Total: 12.58 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.59 Total: 1.39 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.63 Total: -51.00 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.19 Total: -19.50 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.88 -7.46 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404146076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.640 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds