Wall clock time and date at job start Mon Mar 30 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99913 * 2 1 4 4 H 1.48495 * 109.46823 * 239.99710 * 3 2 1 5 5 H 1.48498 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46928 * 119.99941 * 3 2 1 7 7 C 1.37879 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99780 * 172.91787 * 7 2 1 9 9 C 1.50694 * 120.00146 * 352.91553 * 7 2 1 10 10 C 1.53005 * 115.55004 * 84.53485 * 9 7 2 11 11 N 1.46509 * 109.46894 * 39.68228 * 10 9 7 12 12 C 1.34773 * 119.99852 * 181.04886 * 11 10 9 13 13 O 1.21283 * 120.00178 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99689 * 179.97438 * 12 11 10 15 15 H 1.08996 * 109.59722 * 320.29921 * 14 12 11 16 16 C 1.52986 * 109.59544 * 80.75523 * 14 12 11 17 17 N 1.46006 * 110.04285 * 170.06261 * 16 14 12 18 18 C 1.33713 * 122.92753 * 341.84141 * 17 16 14 19 19 O 1.21292 * 118.62597 * 181.68372 * 18 17 16 20 20 C 1.50257 * 122.75281 * 1.68258 * 18 17 16 21 21 N 1.46896 * 109.97606 * 342.80296 * 20 18 17 22 22 C 1.52995 * 117.51963 * 230.23441 * 9 7 2 23 23 C 1.53004 * 117.49964 * 298.86814 * 9 7 2 24 24 H 0.96998 * 119.99671 * 5.03724 * 1 2 3 25 25 H 1.08991 * 109.47277 * 279.68354 * 10 9 7 26 26 H 1.08995 * 109.47382 * 159.67885 * 10 9 7 27 27 H 0.96999 * 119.99867 * 1.04094 * 11 10 9 28 28 H 1.09003 * 109.37626 * 290.23932 * 16 14 12 29 29 H 1.08998 * 109.37671 * 50.00680 * 16 14 12 30 30 H 0.97000 * 118.53631 * 161.81385 * 17 16 14 31 31 H 1.08998 * 109.38449 * 222.64233 * 20 18 17 32 32 H 1.09001 * 109.38436 * 102.95817 * 20 18 17 33 33 H 1.00906 * 110.99928 * 286.93004 * 21 20 18 34 34 H 1.09002 * 117.49858 * 214.96907 * 22 9 7 35 35 H 1.08999 * 117.50209 * 0.02562 * 22 9 7 36 36 H 1.08996 * 117.49687 * 359.97438 * 23 9 7 37 37 H 1.08997 * 117.49504 * 144.99770 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0784 -1.1977 -0.1148 9 6 1.2597 -2.4941 0.1621 10 6 0.6733 -3.0827 -1.1227 11 7 1.6223 -2.8955 -2.2231 12 6 1.3082 -3.3195 -3.4633 13 8 0.2402 -3.8564 -3.6683 14 6 2.2841 -3.1264 -4.5952 15 1 2.7606 -2.1503 -4.5047 16 6 3.3470 -4.2258 -4.5494 17 7 4.1546 -4.1920 -5.7653 18 6 3.7606 -3.5720 -6.8826 19 8 4.4800 -3.6192 -7.8580 20 6 2.4638 -2.8194 -6.9805 21 7 1.5721 -3.2108 -5.8807 22 6 1.7704 -3.4748 1.2195 23 6 0.4722 -2.7008 1.4575 24 1 -0.4849 0.8368 -0.0738 25 1 -0.2625 -2.5769 -1.3601 26 1 0.4855 -4.1471 -0.9821 27 1 2.4766 -2.4664 -2.0591 28 1 3.9906 -4.0708 -3.6834 29 1 2.8593 -5.1972 -4.4682 30 1 5.0155 -4.6390 -5.7624 31 1 1.9848 -3.0462 -7.9329 32 1 2.6615 -1.7490 -6.9225 33 1 1.2010 -4.1374 -6.0283 34 1 1.6887 -4.5393 0.9999 35 1 2.6452 -3.1797 1.7989 36 1 0.4932 -1.8967 2.1930 37 1 -0.4636 -3.2562 1.3943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404146076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:36 Heat of formation + Delta-G solvation = -67.378334 kcal Electronic energy + Delta-G solvation = -20553.092123 eV Core-core repulsion = 17329.926356 eV Total energy + Delta-G solvation = -3223.165767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71334 -40.36942 -38.53676 -37.56255 -34.98874 -34.67312 -33.96616 -31.40910 -28.07839 -27.21517 -26.53667 -24.78849 -22.89837 -21.60993 -21.28471 -20.63381 -19.01730 -18.08540 -17.79500 -17.52717 -16.79964 -16.60490 -16.23971 -16.07040 -15.89218 -15.48812 -14.92450 -14.79443 -14.60901 -14.18062 -13.75058 -13.55435 -13.44401 -13.01358 -12.88630 -12.75203 -12.67168 -12.36479 -11.97775 -11.81727 -11.44336 -10.92951 -10.73561 -10.41470 -10.27966 -10.08582 -9.66207 -9.55494 -8.06848 -6.20358 1.41281 1.46123 1.49950 1.54511 1.65143 2.07316 2.27678 2.45299 3.14084 3.23286 3.39562 3.52671 3.67762 3.83008 3.97369 4.26363 4.31537 4.43583 4.57822 4.61069 4.62645 4.72642 4.79967 5.05584 5.10775 5.31717 5.42171 5.52578 5.66806 5.71725 5.77056 5.80931 6.08751 6.09677 6.40834 6.83556 6.90405 7.02529 7.43221 7.50447 9.00242 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.005238 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.745153 B = 5344.669488 C = 5943.958084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.033 3.967 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.069 0.931 9 C 0.006 3.994 10 C 0.178 3.822 11 N -0.687 5.687 12 C 0.517 3.483 13 O -0.580 6.580 14 C 0.061 3.939 15 H 0.124 0.876 16 C 0.091 3.909 17 N -0.708 5.708 18 C 0.484 3.516 19 O -0.595 6.595 20 C 0.053 3.947 21 N -0.666 5.666 22 C -0.178 4.178 23 C -0.167 4.167 24 H 0.258 0.742 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.412 0.588 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.410 0.590 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.358 0.642 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -6.863 -6.961 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.169 4.169 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.542 4.542 8 H 0.087 0.913 9 C 0.005 3.995 10 C 0.054 3.946 11 N -0.337 5.337 12 C 0.302 3.698 13 O -0.460 6.460 14 C -0.053 4.053 15 H 0.142 0.858 16 C -0.035 4.035 17 N -0.360 5.360 18 C 0.270 3.730 19 O -0.475 6.475 20 C -0.079 4.079 21 N -0.298 5.298 22 C -0.215 4.215 23 C -0.205 4.205 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.250 0.750 28 H 0.135 0.865 29 H 0.100 0.900 30 H 0.247 0.753 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.178 0.822 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.539 -6.404 -7.450 11.801 hybrid contribution 1.115 0.416 0.402 1.256 sum 7.653 -5.988 -7.047 12.004 Atomic orbital electron populations 1.70098 1.07377 1.27301 1.49345 1.25634 0.95210 1.01780 0.94275 0.85850 0.78416 0.79743 0.79023 1.18899 1.22413 1.19960 1.20563 0.93308 0.89201 1.51104 0.91262 1.19123 0.99185 0.94598 0.86564 1.20529 0.90973 0.96589 0.86523 1.45849 1.21501 1.59037 1.07334 1.20430 0.87425 0.78264 0.83686 1.90654 1.26091 1.45494 1.83808 1.21766 0.92252 1.01941 0.89334 0.85816 1.22070 0.93988 0.99157 0.88281 1.45504 1.23281 1.55295 1.11943 1.21769 0.90024 0.79076 0.82084 1.90751 1.56923 1.63008 1.36848 1.22363 0.87051 1.01703 0.96816 1.60508 1.34233 1.35240 0.99808 1.23085 0.97015 0.96381 1.04998 1.22434 0.94119 1.01551 1.02409 0.93337 0.95506 0.93574 0.75041 0.86504 0.90019 0.75300 0.85160 0.85890 0.82205 0.89046 0.89770 0.92166 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.70 12.97 21.45 0.28 -48.42 16 2 C 0.03 1.61 5.39 84.65 0.46 2.07 16 3 Si 0.94 39.48 29.55 68.60 2.03 41.51 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 5 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.50 -23.29 7.43 25.60 0.19 -23.10 16 8 H 0.07 3.02 7.82 -2.91 -0.02 3.00 16 9 C 0.01 0.26 1.71 -52.93 -0.09 0.17 16 10 C 0.18 7.38 5.75 86.38 0.50 7.88 16 11 N -0.69 -23.54 5.33 -463.05 -2.47 -26.01 16 12 C 0.52 16.65 7.07 87.66 0.62 17.27 16 13 O -0.58 -23.28 16.39 -3.04 -0.05 -23.33 16 14 C 0.06 1.38 2.89 44.11 0.13 1.50 16 15 H 0.12 2.59 8.08 -2.39 -0.02 2.57 16 16 C 0.09 1.49 6.59 86.47 0.57 2.06 16 17 N -0.71 -12.22 5.52 -466.08 -2.57 -14.79 16 18 C 0.48 10.71 7.81 87.68 0.69 11.39 16 19 O -0.59 -17.81 17.83 -3.07 -0.05 -17.86 16 20 C 0.05 0.99 6.68 85.42 0.57 1.57 16 21 N -0.67 -15.08 6.29 -499.61 -3.14 -18.22 16 22 C -0.18 -6.50 9.88 30.60 0.30 -6.20 16 23 C -0.17 -7.17 9.51 30.60 0.29 -6.88 16 24 H 0.26 13.61 8.32 -92.71 -0.77 12.84 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.80 7.94 -2.39 -0.02 1.78 16 27 H 0.41 12.84 7.45 -92.71 -0.69 12.15 16 28 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.34 8.11 -2.39 -0.02 1.32 16 30 H 0.41 6.08 8.84 -92.71 -0.82 5.26 16 31 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.36 8.06 8.53 -89.69 -0.77 7.29 16 34 H 0.09 2.90 8.08 -2.39 -0.02 2.88 16 35 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -64.34 316.08 -2.92 -67.27 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -1.16 Total: 32.14 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 4.22 Total: 7.73 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -7.90 Total: -107.44 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.10 Total: -41.19 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -64.34 -2.92 -67.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404146076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.113 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds