Wall clock time and date at job start Mon Mar 30 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.47526 * 119.99656 * 2 1 4 4 O 1.21452 * 119.99902 * 174.72638 * 3 2 1 5 5 O 1.34753 * 120.00389 * 354.72956 * 3 2 1 6 6 C 1.34259 * 120.00161 * 179.97438 * 2 1 3 7 7 C 1.50697 * 119.99968 * 188.23261 * 6 2 1 8 8 C 1.47684 * 119.99816 * 8.23316 * 6 2 1 9 9 O 1.21533 * 119.99990 * 0.93240 * 8 6 2 10 10 N 1.34777 * 119.99977 * 180.93520 * 8 6 2 11 11 C 1.46500 * 120.00112 * 185.12291 * 10 8 6 12 12 C 1.52994 * 109.46961 * 184.73358 * 11 10 8 13 13 C 1.50705 * 115.55145 * 305.58603 * 12 11 10 14 14 H 1.08001 * 119.99565 * 143.63701 * 13 12 11 15 15 C 1.37873 * 120.00016 * 323.64673 * 13 12 11 16 16 N 1.31517 * 120.00228 * 2.42336 * 15 13 12 17 17 Si 1.86797 * 120.00025 * 182.42728 * 15 13 12 18 18 H 1.48499 * 109.47311 * 89.99675 * 17 15 13 19 19 H 1.48500 * 109.47503 * 209.99753 * 17 15 13 20 20 H 1.48509 * 109.47298 * 329.99934 * 17 15 13 21 21 C 1.53003 * 117.49836 * 159.92246 * 12 11 10 22 22 C 1.52993 * 117.50081 * 91.26572 * 12 11 10 23 23 H 1.09004 * 109.46674 * 95.68837 * 1 2 3 24 24 H 1.08999 * 109.47239 * 215.68570 * 1 2 3 25 25 H 1.09000 * 109.47524 * 335.68706 * 1 2 3 26 26 H 0.96694 * 117.00293 * 180.02562 * 5 3 2 27 27 H 1.08994 * 109.47167 * 61.11600 * 7 6 2 28 28 H 1.08998 * 109.46862 * 181.11484 * 7 6 2 29 29 H 1.09008 * 109.46961 * 301.11666 * 7 6 2 30 30 H 0.96998 * 119.99614 * 5.12243 * 10 8 6 31 31 H 1.08994 * 109.46934 * 304.73371 * 11 10 8 32 32 H 1.09004 * 109.47014 * 64.73376 * 11 10 8 33 33 H 0.96997 * 120.00236 * 185.00636 * 16 15 13 34 34 H 1.08998 * 117.49869 * 0.02562 * 21 12 11 35 35 H 1.09007 * 117.49942 * 145.01482 * 21 12 11 36 36 H 1.09003 * 117.50014 * 214.98069 * 22 12 11 37 37 H 1.09000 * 117.50190 * 359.96985 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.2777 0.0000 4 8 3.4553 1.2799 0.0967 5 8 1.5751 2.4422 -0.1072 6 6 2.1784 -1.1627 0.0005 7 6 3.6737 -1.1693 0.1874 8 6 1.4514 -2.4352 -0.1821 9 8 0.2477 -2.4287 -0.3497 10 7 2.1228 -3.6036 -0.1627 11 6 1.4216 -4.8563 -0.4550 12 6 2.3762 -6.0345 -0.2517 13 6 3.6714 -5.9614 -1.0187 14 1 4.5839 -6.3303 -0.5739 15 6 3.6916 -5.4237 -2.2881 16 7 2.5901 -4.9310 -2.8111 17 14 5.2834 -5.3949 -3.2651 18 1 5.3984 -6.6433 -4.0610 19 1 5.2826 -4.2240 -4.1784 20 1 6.4349 -5.2946 -2.3326 21 6 1.7567 -7.4176 -0.0418 22 6 2.4106 -6.6852 1.1325 23 1 -0.3633 -0.1019 -1.0227 24 1 -0.3634 -0.8347 0.5995 25 1 -0.3634 0.9365 0.4231 26 1 2.1016 3.2533 -0.1029 27 1 3.9204 -0.7398 1.1583 28 1 4.0413 -2.1943 0.1396 29 1 4.1409 -0.5785 -0.6006 30 1 3.0702 -3.6152 0.0448 31 1 0.5685 -4.9600 0.2153 32 1 1.0730 -4.8451 -1.4878 33 1 2.5866 -4.6191 -3.7296 34 1 0.6690 -7.4882 -0.0489 35 1 2.2861 -8.2747 -0.4580 36 1 3.3700 -7.0607 1.4884 37 1 1.7534 -6.2736 1.8986 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404255912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:20 Heat of formation + Delta-G solvation = -84.566908 kcal Electronic energy + Delta-G solvation = -20757.677720 eV Core-core repulsion = 17501.473850 eV Total energy + Delta-G solvation = -3256.203871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39774 -39.10801 -36.87534 -36.25478 -34.45257 -33.40347 -32.25933 -30.01017 -26.29453 -25.50718 -25.07873 -24.01182 -21.33604 -20.83625 -19.40365 -18.60156 -17.89228 -16.63383 -15.80712 -15.75784 -15.58369 -14.89398 -14.83052 -14.41032 -13.77645 -13.50641 -13.16246 -12.96048 -12.73785 -12.55065 -12.52586 -11.89178 -11.65487 -11.50837 -11.46962 -11.23995 -11.13941 -10.79006 -10.56397 -10.45799 -10.31085 -9.71952 -9.12549 -9.01996 -8.92335 -8.87985 -8.34206 -7.91263 -6.08367 -4.26938 0.82974 2.74355 2.97067 3.18701 3.28241 3.29002 3.77971 4.11156 4.25390 4.88876 4.93083 5.10333 5.33589 5.43526 5.57370 5.88280 5.92307 5.93839 6.03569 6.09698 6.25240 6.30589 6.42088 6.48186 6.56599 6.57445 6.64886 6.72031 6.85330 7.03482 7.21416 7.46998 7.54194 7.87206 7.88906 8.24283 8.42991 8.75382 8.98909 9.37118 10.82538 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.006032 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.515700 B = 4641.112049 C = 5421.064087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.118 4.118 3 C 0.517 3.483 4 O -0.509 6.509 5 O -0.511 6.511 6 C -0.063 4.063 7 C -0.123 4.123 8 C 0.534 3.466 9 O -0.546 6.546 10 N -0.668 5.668 11 C 0.162 3.838 12 C 0.033 3.967 13 C -0.497 4.497 14 H 0.062 0.938 15 C 0.074 3.926 16 N -0.870 5.870 17 Si 0.892 3.108 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.196 4.196 22 C -0.211 4.211 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.409 0.591 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.402 0.598 31 H 0.027 0.973 32 H 0.116 0.884 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 9.515 5.052 10.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.121 4.121 3 C 0.363 3.637 4 O -0.400 6.400 5 O -0.322 6.322 6 C -0.067 4.067 7 C -0.179 4.179 8 C 0.320 3.680 9 O -0.428 6.428 10 N -0.315 5.315 11 C 0.039 3.961 12 C 0.032 3.968 13 C -0.534 4.534 14 H 0.080 0.920 15 C -0.130 4.130 16 N -0.506 5.506 17 Si 0.720 3.280 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.235 4.235 22 C -0.248 4.248 23 H 0.094 0.906 24 H 0.113 0.887 25 H 0.076 0.924 26 H 0.267 0.733 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.239 0.761 31 H 0.045 0.955 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.571 9.255 4.777 10.533 hybrid contribution 1.731 0.421 -0.564 1.869 sum 0.160 9.676 4.213 10.555 Atomic orbital electron populations 1.20921 0.88676 1.02670 1.03865 1.20983 0.97554 0.88307 1.05213 1.21155 0.85410 0.84529 0.72604 1.90878 1.15330 1.87864 1.45884 1.84613 1.45110 1.16900 1.85567 1.22453 0.97216 0.93196 0.93822 1.21127 0.90170 1.03004 1.03576 1.17988 0.86984 0.83730 0.79339 1.90687 1.13876 1.87163 1.51063 1.45742 1.13604 1.06049 1.66123 1.21194 0.91661 0.80480 1.02757 1.19235 0.96004 0.89231 0.92287 1.20537 0.92332 1.40531 0.99999 0.91981 1.24998 0.96509 0.93834 0.97697 1.69839 1.26535 1.39915 1.14343 0.86575 0.83524 0.77784 0.80144 1.20512 1.21086 1.19705 1.22934 0.97580 0.99183 1.03768 1.22957 1.01000 1.08368 0.92513 0.90578 0.88706 0.92352 0.73291 0.89936 0.91238 0.89228 0.76101 0.95454 0.86611 0.92594 0.91405 0.90164 0.90571 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 8.34 36.01 0.30 -1.27 16 2 C -0.12 -1.85 6.04 -102.24 -0.62 -2.46 16 3 C 0.52 7.29 8.23 34.52 0.28 7.57 16 4 O -0.51 -7.96 13.98 -19.23 -0.27 -8.23 16 5 O -0.51 -5.46 12.67 -40.64 -0.51 -5.97 16 6 C -0.06 -1.08 6.04 -102.17 -0.62 -1.70 16 7 C -0.12 -1.90 8.33 36.00 0.30 -1.60 16 8 C 0.53 10.78 7.68 -12.40 -0.10 10.69 16 9 O -0.55 -12.05 13.24 5.34 0.07 -11.98 16 10 N -0.67 -13.95 5.21 -61.31 -0.32 -14.27 16 11 C 0.16 3.70 4.64 -4.04 -0.02 3.68 16 12 C 0.03 0.76 2.05 -155.66 -0.32 0.44 16 13 C -0.50 -12.21 8.29 -34.44 -0.29 -12.50 16 14 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 15 C 0.07 1.83 5.33 -17.82 -0.09 1.74 16 16 N -0.87 -22.44 10.29 55.43 0.57 -21.87 16 17 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 C -0.20 -4.16 9.96 -26.70 -0.27 -4.43 16 22 C -0.21 -4.27 9.92 -26.70 -0.26 -4.54 16 23 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 24 H 0.09 1.57 6.09 -51.93 -0.32 1.25 16 25 H 0.06 0.74 7.60 -51.93 -0.39 0.34 16 26 H 0.41 2.34 9.11 45.56 0.42 2.75 16 27 H 0.08 1.18 7.66 -51.93 -0.40 0.78 16 28 H 0.07 1.08 5.88 -51.93 -0.31 0.77 16 29 H 0.09 1.43 6.82 -51.92 -0.35 1.08 16 30 H 0.40 8.10 5.71 -40.82 -0.23 7.86 16 31 H 0.03 0.61 8.05 -51.93 -0.42 0.20 16 32 H 0.12 3.00 5.91 -51.93 -0.31 2.70 16 33 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 310.71 15.07 4.68 4.68 Total: -1.00 -28.10 310.71 -6.46 -34.56 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -3.97 Total: 12.81 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.69 Total: -4.39 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.25 Total: -36.15 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.71 Total: -26.19 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.10 -6.46 -34.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404255912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.005 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds