Wall clock time and date at job start Mon Mar 30 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.47526 * 119.99656 * 2 1 4 4 O 1.21452 * 119.99902 * 174.72638 * 3 2 1 5 5 O 1.34753 * 120.00389 * 354.72956 * 3 2 1 6 6 C 1.34259 * 120.00161 * 179.97438 * 2 1 3 7 7 C 1.50697 * 119.99968 * 188.23261 * 6 2 1 8 8 C 1.47684 * 119.99816 * 8.23316 * 6 2 1 9 9 O 1.21533 * 119.99990 * 0.93240 * 8 6 2 10 10 N 1.34777 * 119.99977 * 180.93520 * 8 6 2 11 11 C 1.46500 * 120.00112 * 185.12291 * 10 8 6 12 12 C 1.52994 * 109.46961 * 184.73358 * 11 10 8 13 13 C 1.50705 * 115.55145 * 305.58603 * 12 11 10 14 14 H 1.08001 * 119.99565 * 143.63701 * 13 12 11 15 15 C 1.37873 * 120.00016 * 323.64673 * 13 12 11 16 16 N 1.31517 * 120.00228 * 2.42336 * 15 13 12 17 17 Si 1.86797 * 120.00025 * 182.42728 * 15 13 12 18 18 H 1.48499 * 109.47311 * 89.99675 * 17 15 13 19 19 H 1.48500 * 109.47503 * 209.99753 * 17 15 13 20 20 H 1.48509 * 109.47298 * 329.99934 * 17 15 13 21 21 C 1.53003 * 117.49836 * 159.92246 * 12 11 10 22 22 C 1.52993 * 117.50081 * 91.26572 * 12 11 10 23 23 H 1.09004 * 109.46674 * 95.68837 * 1 2 3 24 24 H 1.08999 * 109.47239 * 215.68570 * 1 2 3 25 25 H 1.09000 * 109.47524 * 335.68706 * 1 2 3 26 26 H 0.96694 * 117.00293 * 180.02562 * 5 3 2 27 27 H 1.08994 * 109.47167 * 61.11600 * 7 6 2 28 28 H 1.08998 * 109.46862 * 181.11484 * 7 6 2 29 29 H 1.09008 * 109.46961 * 301.11666 * 7 6 2 30 30 H 0.96998 * 119.99614 * 5.12243 * 10 8 6 31 31 H 1.08994 * 109.46934 * 304.73371 * 11 10 8 32 32 H 1.09004 * 109.47014 * 64.73376 * 11 10 8 33 33 H 0.96997 * 120.00236 * 185.00636 * 16 15 13 34 34 H 1.08998 * 117.49869 * 0.02562 * 21 12 11 35 35 H 1.09007 * 117.49942 * 145.01482 * 21 12 11 36 36 H 1.09003 * 117.50014 * 214.98069 * 22 12 11 37 37 H 1.09000 * 117.50190 * 359.96985 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.2777 0.0000 4 8 3.4553 1.2799 0.0967 5 8 1.5751 2.4422 -0.1072 6 6 2.1784 -1.1627 0.0005 7 6 3.6737 -1.1693 0.1874 8 6 1.4514 -2.4352 -0.1821 9 8 0.2477 -2.4287 -0.3497 10 7 2.1228 -3.6036 -0.1627 11 6 1.4216 -4.8563 -0.4550 12 6 2.3762 -6.0345 -0.2517 13 6 3.6714 -5.9614 -1.0187 14 1 4.5839 -6.3303 -0.5739 15 6 3.6916 -5.4237 -2.2881 16 7 2.5901 -4.9310 -2.8111 17 14 5.2834 -5.3949 -3.2651 18 1 5.3984 -6.6433 -4.0610 19 1 5.2826 -4.2240 -4.1784 20 1 6.4349 -5.2946 -2.3326 21 6 1.7567 -7.4176 -0.0418 22 6 2.4106 -6.6852 1.1325 23 1 -0.3633 -0.1019 -1.0227 24 1 -0.3634 -0.8347 0.5995 25 1 -0.3634 0.9365 0.4231 26 1 2.1016 3.2533 -0.1029 27 1 3.9204 -0.7398 1.1583 28 1 4.0413 -2.1943 0.1396 29 1 4.1409 -0.5785 -0.6006 30 1 3.0702 -3.6152 0.0448 31 1 0.5685 -4.9600 0.2153 32 1 1.0730 -4.8451 -1.4878 33 1 2.5866 -4.6191 -3.7296 34 1 0.6690 -7.4882 -0.0489 35 1 2.2861 -8.2747 -0.4580 36 1 3.3700 -7.0607 1.4884 37 1 1.7534 -6.2736 1.8986 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404255912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:20 Heat of formation + Delta-G solvation = -102.044468 kcal Electronic energy + Delta-G solvation = -20758.435604 eV Core-core repulsion = 17501.473850 eV Total energy + Delta-G solvation = -3256.961754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58701 -40.58935 -38.56546 -37.29891 -35.77987 -35.04179 -34.13979 -31.30884 -27.99993 -27.32649 -26.28191 -25.35967 -22.97780 -22.18631 -21.17130 -20.11111 -18.93725 -18.32680 -17.26613 -17.02468 -16.92363 -16.70779 -16.25718 -15.98730 -15.40617 -14.82970 -14.72338 -14.22749 -14.18389 -14.03035 -13.76102 -13.53243 -13.27610 -12.97703 -12.91659 -12.57391 -12.54664 -12.47979 -12.29166 -12.03149 -11.69875 -11.45885 -10.91210 -10.69622 -10.51262 -10.30345 -10.12591 -9.61334 -7.96493 -6.20168 -0.45613 1.42572 1.47868 1.54364 1.56336 1.82375 2.29095 2.41697 2.63720 3.08268 3.63438 3.68463 3.87751 4.01945 4.24196 4.38075 4.54598 4.67252 4.70693 4.73881 4.80426 4.84719 4.85595 4.97773 5.12828 5.15335 5.20962 5.30570 5.47701 5.53984 5.57167 5.61004 5.82565 5.98032 6.37786 6.74078 6.91248 6.95304 7.38355 7.45340 8.91547 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.006032 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.515700 B = 4641.112049 C = 5421.064087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.105 4.105 3 C 0.527 3.473 4 O -0.523 6.523 5 O -0.499 6.499 6 C -0.084 4.084 7 C -0.112 4.112 8 C 0.531 3.469 9 O -0.571 6.571 10 N -0.669 5.669 11 C 0.174 3.826 12 C 0.005 3.995 13 C -0.502 4.502 14 H 0.059 0.941 15 C 0.038 3.962 16 N -0.891 5.891 17 Si 0.944 3.056 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.265 1.265 21 C -0.196 4.196 22 C -0.187 4.187 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.434 0.566 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.405 0.595 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.258 0.742 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 10.721 5.863 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C 0.372 3.628 4 O -0.415 6.415 5 O -0.313 6.313 6 C -0.088 4.088 7 C -0.168 4.168 8 C 0.319 3.681 9 O -0.455 6.455 10 N -0.317 5.317 11 C 0.050 3.950 12 C 0.004 3.996 13 C -0.540 4.540 14 H 0.077 0.923 15 C -0.164 4.164 16 N -0.529 5.529 17 Si 0.771 3.229 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.189 1.189 21 C -0.235 4.235 22 C -0.224 4.224 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.296 0.704 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.242 0.758 31 H 0.044 0.956 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.925 10.486 5.603 11.925 hybrid contribution 1.448 0.124 -0.791 1.655 sum 0.523 10.610 4.812 11.662 Atomic orbital electron populations 1.20869 0.88287 1.03402 1.03174 1.21231 0.97976 0.89043 1.02561 1.20713 0.84856 0.84859 0.72356 1.90883 1.15900 1.88228 1.46510 1.84545 1.45069 1.17023 1.84620 1.22274 0.97906 0.92147 0.96490 1.21048 0.88928 1.02686 1.04113 1.18446 0.86848 0.84494 0.78359 1.90669 1.15013 1.87681 1.52099 1.45674 1.13671 1.05863 1.66483 1.20854 0.91856 0.81600 1.00672 1.19294 0.95843 0.89972 0.94495 1.20708 0.92878 1.40141 1.00245 0.92310 1.25535 0.98538 0.93812 0.98498 1.70007 1.27886 1.40872 1.14104 0.85760 0.81106 0.77146 0.78903 1.20794 1.21647 1.18898 1.22952 0.98196 0.98092 1.04248 1.22948 1.01416 1.06389 0.91658 0.91355 0.90409 0.89604 0.70357 0.88622 0.91732 0.89644 0.75759 0.95640 0.89904 0.93220 0.90500 0.90425 0.89775 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.91 8.34 71.24 0.59 -2.31 16 2 C -0.11 -3.15 6.04 -18.32 -0.11 -3.26 16 3 C 0.53 13.51 8.23 70.27 0.58 14.08 16 4 O -0.52 -15.15 13.98 19.99 0.28 -14.87 16 5 O -0.50 -8.91 12.67 -56.64 -0.72 -9.62 16 6 C -0.08 -2.85 6.04 -18.28 -0.11 -2.96 16 7 C -0.11 -3.37 8.33 71.24 0.59 -2.77 16 8 C 0.53 21.67 7.68 86.74 0.67 22.33 16 9 O -0.57 -25.68 13.24 -3.82 -0.05 -25.73 16 10 N -0.67 -28.27 5.21 -466.18 -2.43 -30.70 16 11 C 0.17 8.06 4.64 86.38 0.40 8.46 16 12 C 0.00 0.21 2.05 -52.93 -0.11 0.10 16 13 C -0.50 -24.57 8.29 25.60 0.21 -24.36 16 14 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 15 C 0.04 1.88 5.33 84.65 0.45 2.33 16 16 N -0.89 -46.76 10.29 21.45 0.22 -46.54 16 17 Si 0.94 40.38 29.54 68.60 2.03 42.41 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 21 C -0.20 -8.16 9.96 30.62 0.30 -7.86 16 22 C -0.19 -7.27 9.92 30.61 0.30 -6.96 16 23 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 24 H 0.08 2.55 6.09 -2.39 -0.01 2.53 16 25 H 0.09 1.96 7.60 -2.39 -0.02 1.94 16 26 H 0.43 3.25 9.11 -74.06 -0.67 2.58 16 27 H 0.10 2.58 7.66 -2.39 -0.02 2.56 16 28 H 0.06 1.97 5.88 -2.39 -0.01 1.96 16 29 H 0.09 2.65 6.82 -2.38 -0.02 2.63 16 30 H 0.41 16.40 5.71 -92.71 -0.53 15.87 16 31 H 0.03 1.16 8.05 -2.39 -0.02 1.14 16 32 H 0.08 4.44 5.91 -2.38 -0.01 4.42 16 33 H 0.26 13.34 8.32 -92.71 -0.77 12.57 16 34 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 36 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -59.27 310.71 3.02 -56.26 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.09 Total: 31.98 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 3.78 Total: -3.18 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -2.21 Total: -77.24 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.49 Total: -50.22 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -59.27 3.02 -56.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404255912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.789 kcal (2) G-P(sol) polarization free energy of solvation -59.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds