Wall clock time and date at job start Mon Mar 30 2020 05:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46830 * 120.00397 * 8 6 4 11 11 H 1.48503 * 109.47108 * 240.00004 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21603 * 120.00257 * 359.72088 * 14 13 12 16 16 C 1.47402 * 119.99679 * 179.72400 * 14 13 12 17 17 C 1.37362 * 128.56305 * 359.67301 * 16 14 13 18 18 O 1.33499 * 106.33709 * 179.91214 * 17 16 14 19 19 N 1.20656 * 113.15795 * 0.38708 * 18 17 16 20 20 C 1.30016 * 112.30041 * 359.75713 * 19 18 17 21 21 C 1.50703 * 127.33332 * 179.97438 * 20 19 18 22 22 N 1.46901 * 109.47316 * 270.00282 * 21 20 19 23 23 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 24 24 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 25 25 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 28 28 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 29 29 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 30 30 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 31 31 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 32 32 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 33 33 H 1.07993 * 126.82986 * 359.97438 * 17 16 14 34 34 H 1.09001 * 109.46971 * 30.00250 * 21 20 19 35 35 H 1.09004 * 109.47043 * 150.00089 * 21 20 19 36 36 H 1.00894 * 111.00252 * 56.04484 * 22 21 20 37 37 H 1.00905 * 111.00051 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5809 -1.4764 3.7812 16 6 1.3955 0.2108 4.8730 17 6 0.6095 1.3346 4.9519 18 8 0.4369 1.5815 6.2525 19 7 1.0010 0.7879 6.9651 20 6 1.6373 -0.1199 6.2858 21 6 2.4500 -1.2663 6.8300 22 7 3.8457 -0.8403 6.9995 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 0.7090 1.1613 -3.4845 30 1 3.1300 -0.7216 1.2491 31 1 1.6766 -1.7488 1.2493 32 1 0.9942 0.7584 2.3564 33 1 0.2099 1.9044 4.1262 34 1 2.0444 -1.5739 7.7939 35 1 2.4079 -2.1042 6.1340 36 1 3.9054 -0.0242 7.5898 37 1 4.4117 -1.5922 7.3632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407357335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:48 Heat of formation + Delta-G solvation = 18.869622 kcal Electronic energy + Delta-G solvation = -20427.432260 eV Core-core repulsion = 17208.006485 eV Total energy + Delta-G solvation = -3219.425775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.97781 -39.20081 -36.46552 -35.61961 -33.51597 -32.66158 -31.95054 -30.72300 -26.44371 -25.77459 -25.68943 -25.20758 -23.69064 -21.12413 -20.32727 -18.92058 -18.16368 -17.80032 -16.79543 -15.93584 -15.67185 -15.38143 -14.78883 -14.71642 -14.64494 -14.31141 -13.45080 -13.01850 -12.83749 -12.79281 -12.45566 -12.22714 -11.51114 -11.44338 -11.24262 -10.91339 -10.68577 -10.44113 -10.25866 -10.23330 -9.76975 -9.75322 -9.67947 -9.34851 -8.86972 -8.82300 -8.51097 -8.36474 -6.05267 -4.15171 1.08637 1.67558 2.90160 3.25851 3.34705 3.38954 3.50378 3.58813 3.92689 4.21128 4.38426 4.57238 4.84292 5.11197 5.19453 5.21967 5.32647 5.53670 5.86191 6.18298 6.28195 6.45676 6.71753 6.76135 6.86154 6.87989 6.93645 6.97427 7.22089 7.30749 7.51110 7.66432 7.93097 7.96869 8.07590 8.11585 8.34527 8.58693 8.85661 9.51015 10.96249 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.035210 B = 0.004219 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.039475 B = 6635.481585 C = 7165.139099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.133 3.867 13 N -0.709 5.709 14 C 0.582 3.418 15 O -0.530 6.530 16 C -0.226 4.226 17 C -0.016 4.016 18 O 0.096 5.904 19 N -0.360 5.360 20 C 0.066 3.934 21 C 0.144 3.856 22 N -0.835 5.835 23 H 0.005 0.995 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.086 0.914 28 H 0.005 0.995 29 H 0.259 0.741 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.395 0.605 33 H 0.227 0.773 34 H 0.043 0.957 35 H 0.110 0.890 36 H 0.339 0.661 37 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 1.631 14.718 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.011 3.989 13 N -0.360 5.360 14 C 0.367 3.633 15 O -0.408 6.408 16 C -0.234 4.234 17 C -0.098 4.098 18 O 0.036 5.964 19 N -0.067 5.067 20 C -0.097 4.097 21 C 0.013 3.987 22 N -0.367 5.367 23 H 0.024 0.976 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.105 0.895 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.243 0.757 34 H 0.061 0.939 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.934 1.371 15.121 15.212 hybrid contribution 0.017 -0.407 -0.753 0.856 sum -0.917 0.964 14.368 14.430 Atomic orbital electron populations 1.21836 0.97721 0.99252 1.00044 1.18382 0.92824 0.92815 0.90557 1.21838 0.98727 0.98278 1.00036 1.21010 1.31447 1.12120 0.89798 0.92317 1.24874 0.94830 0.94906 0.98870 1.69803 1.36732 1.22753 1.23161 0.86515 0.78653 0.79771 0.82958 1.19734 1.21071 1.21050 1.21780 0.98391 0.95818 0.82881 1.46162 1.52413 1.31756 1.05630 1.16861 0.80665 0.83985 0.81806 1.90770 1.37709 1.25900 1.86411 1.22552 1.05913 0.99649 0.95301 1.26456 0.98259 0.97211 0.87843 1.84535 1.54817 1.42423 1.14666 1.73621 1.11488 1.02907 1.18641 1.24674 0.98549 0.97460 0.89021 1.20058 0.86592 0.92710 0.99379 1.58471 1.08553 1.10853 1.58814 0.97615 0.89527 0.95359 0.95318 0.89531 0.97609 0.93041 0.92364 0.92430 0.76968 0.75675 0.93860 0.87233 0.84878 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 2 C 0.05 1.23 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 4 C -0.51 -12.90 8.01 -34.44 -0.28 -13.17 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.03 9.35 55.43 0.52 -22.51 16 8 Si 0.89 20.37 29.54 -169.99 -5.02 15.34 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.13 2.73 4.50 -4.04 -0.02 2.71 16 13 N -0.71 -12.08 4.95 -61.39 -0.30 -12.38 16 14 C 0.58 10.12 7.81 -12.53 -0.10 10.02 16 15 O -0.53 -10.88 15.70 5.27 0.08 -10.79 16 16 C -0.23 -3.24 6.47 -102.89 -0.67 -3.91 16 17 C -0.02 -0.17 11.85 30.41 0.36 0.19 16 18 O 0.10 1.14 11.06 18.64 0.21 1.34 16 19 N -0.36 -4.80 12.01 34.78 0.42 -4.38 16 20 C 0.07 0.92 7.10 -79.77 -0.57 0.35 16 21 C 0.14 1.77 7.04 -4.97 -0.04 1.74 16 22 N -0.84 -9.51 9.61 -11.40 -0.11 -9.62 16 23 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 24 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 28 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 29 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.40 5.82 5.35 -40.82 -0.22 5.60 16 33 H 0.23 1.51 7.68 -52.49 -0.40 1.11 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.11 1.51 7.11 -51.93 -0.37 1.14 16 36 H 0.34 3.46 8.98 -39.29 -0.35 3.11 16 37 H 0.35 3.11 9.08 -39.29 -0.36 2.76 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -29.53 308.97 -5.12 -34.65 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.70 Total: 8.06 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.87 Total: -4.36 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.52 Total: -48.90 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.29 Total: -9.45 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.53 -5.12 -34.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407357335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.520 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds