Wall clock time and date at job start Mon Mar 30 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46830 * 120.00397 * 8 6 4 11 11 H 1.48503 * 109.47108 * 240.00004 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21603 * 120.00257 * 359.72088 * 14 13 12 16 16 C 1.47402 * 119.99679 * 179.72400 * 14 13 12 17 17 C 1.37362 * 128.56305 * 359.67301 * 16 14 13 18 18 O 1.33499 * 106.33709 * 179.91214 * 17 16 14 19 19 N 1.20656 * 113.15795 * 0.38708 * 18 17 16 20 20 C 1.30016 * 112.30041 * 359.75713 * 19 18 17 21 21 C 1.50703 * 127.33332 * 179.97438 * 20 19 18 22 22 N 1.46901 * 109.47316 * 270.00282 * 21 20 19 23 23 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 24 24 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 25 25 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 28 28 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 29 29 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 30 30 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 31 31 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 32 32 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 33 33 H 1.07993 * 126.82986 * 359.97438 * 17 16 14 34 34 H 1.09001 * 109.46971 * 30.00250 * 21 20 19 35 35 H 1.09004 * 109.47043 * 150.00089 * 21 20 19 36 36 H 1.00894 * 111.00252 * 56.04484 * 22 21 20 37 37 H 1.00905 * 111.00051 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5809 -1.4764 3.7812 16 6 1.3955 0.2108 4.8730 17 6 0.6095 1.3346 4.9519 18 8 0.4369 1.5815 6.2525 19 7 1.0010 0.7879 6.9651 20 6 1.6373 -0.1199 6.2858 21 6 2.4500 -1.2663 6.8300 22 7 3.8457 -0.8403 6.9995 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 0.7090 1.1613 -3.4845 30 1 3.1300 -0.7216 1.2491 31 1 1.6766 -1.7488 1.2493 32 1 0.9942 0.7584 2.3564 33 1 0.2099 1.9044 4.1262 34 1 2.0444 -1.5739 7.7939 35 1 2.4079 -2.1042 6.1340 36 1 3.9054 -0.0242 7.5898 37 1 4.4117 -1.5922 7.3632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407357335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:47 Heat of formation + Delta-G solvation = -2.936993 kcal Electronic energy + Delta-G solvation = -20428.377865 eV Core-core repulsion = 17208.006485 eV Total energy + Delta-G solvation = -3220.371381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.97748 -40.63326 -38.11180 -36.62264 -35.08905 -33.80927 -33.07609 -32.34344 -27.79671 -27.51800 -27.23309 -26.66039 -24.99676 -22.14546 -21.60674 -20.59421 -19.38244 -18.79476 -18.03810 -17.59847 -16.78732 -16.76257 -16.43189 -16.16416 -15.72229 -15.48175 -14.89514 -14.66844 -14.48007 -14.00684 -13.78259 -13.42685 -13.17553 -13.07255 -12.67428 -12.57244 -12.49014 -12.22075 -12.11680 -11.45333 -11.32382 -11.23624 -11.02729 -10.79388 -10.66302 -10.37202 -9.94266 -9.73810 -8.00227 -6.15050 0.10219 0.64579 1.42895 1.47850 1.56470 1.92444 2.22165 2.33558 2.50819 2.91503 3.23944 3.25947 3.71302 3.85254 4.01445 4.28861 4.35841 4.47947 4.54627 4.63210 4.76019 4.86515 5.03641 5.09557 5.14541 5.23886 5.36681 5.58821 5.70935 5.71543 6.03560 6.20150 6.24863 6.46738 6.47427 6.61707 6.89055 7.12813 7.25335 7.52669 8.98636 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.035210 B = 0.004219 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.039475 B = 6635.481585 C = 7165.139099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.150 3.850 13 N -0.700 5.700 14 C 0.586 3.414 15 O -0.569 6.569 16 C -0.265 4.265 17 C 0.027 3.973 18 O 0.104 5.896 19 N -0.368 5.368 20 C 0.056 3.944 21 C 0.144 3.856 22 N -0.846 5.846 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.260 0.740 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.409 0.591 33 H 0.272 0.728 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.346 0.654 37 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 2.906 15.648 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.027 3.973 13 N -0.352 5.352 14 C 0.373 3.627 15 O -0.450 6.450 16 C -0.273 4.273 17 C -0.055 4.055 18 O 0.044 5.956 19 N -0.075 5.075 20 C -0.107 4.107 21 C 0.013 3.987 22 N -0.380 5.380 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.247 0.753 33 H 0.287 0.713 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.159 0.841 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.789 2.670 16.074 16.392 hybrid contribution 0.265 -0.775 -1.009 1.300 sum -1.524 1.895 15.065 15.260 Atomic orbital electron populations 1.21679 0.96847 0.98771 1.00633 1.18380 0.93451 0.93105 0.90088 1.21686 0.97934 0.97733 1.00621 1.21297 1.31567 1.12106 0.91590 0.93835 1.25397 0.95183 0.95581 1.00799 1.69898 1.37033 1.23208 1.23478 0.85760 0.78113 0.78757 0.80477 1.20123 1.20807 1.20835 1.21311 0.97161 0.95174 0.83663 1.45882 1.52623 1.32006 1.04651 1.17166 0.79706 0.83414 0.82411 1.90752 1.39485 1.27741 1.86988 1.22244 1.09015 1.01803 0.94189 1.27178 0.94994 0.95176 0.88163 1.84539 1.54181 1.41843 1.15045 1.73634 1.11823 1.03070 1.18944 1.24914 0.98757 0.97899 0.89121 1.19996 0.87148 0.91840 0.99697 1.58438 1.08349 1.11768 1.59450 0.93933 0.91903 0.96349 0.96439 0.91878 0.93963 0.93074 0.94192 0.94003 0.75321 0.71254 0.91997 0.89214 0.84117 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.08 71.98 0.58 -4.47 16 2 C 0.05 2.22 0.50 -52.93 -0.03 2.19 16 3 C -0.12 -5.11 8.08 71.98 0.58 -4.53 16 4 C -0.53 -27.12 8.01 25.60 0.21 -26.92 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -46.43 9.35 21.45 0.20 -46.23 16 8 Si 0.94 41.87 29.54 68.60 2.03 43.90 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.15 6.11 4.50 86.38 0.39 6.50 16 13 N -0.70 -22.51 4.95 -466.39 -2.31 -24.82 16 14 C 0.59 19.68 7.81 86.66 0.68 20.35 16 15 O -0.57 -23.53 15.70 -4.04 -0.06 -23.59 16 16 C -0.26 -6.98 6.47 -18.74 -0.12 -7.10 16 17 C 0.03 0.47 11.85 67.61 0.80 1.27 16 18 O 0.10 2.09 11.06 76.93 0.85 2.94 16 19 N -0.37 -8.93 12.01 -44.78 -0.54 -9.47 16 20 C 0.06 1.47 7.10 45.16 0.32 1.79 16 21 C 0.14 3.47 7.04 85.56 0.60 4.07 16 22 N -0.85 -18.65 9.61 -189.99 -1.83 -20.48 16 23 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 24 H 0.06 2.95 6.07 -2.38 -0.01 2.93 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.06 2.97 6.07 -2.38 -0.01 2.96 16 28 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 29 H 0.26 12.96 8.31 -92.71 -0.77 12.19 16 30 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.41 10.54 5.35 -92.71 -0.50 10.05 16 33 H 0.27 1.98 7.68 -2.91 -0.02 1.96 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 2.51 7.11 -2.39 -0.02 2.49 16 36 H 0.35 6.68 8.98 -89.70 -0.81 5.88 16 37 H 0.36 6.22 9.08 -89.69 -0.81 5.40 16 Total: -1.00 -64.28 308.97 1.80 -62.48 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.99 Total: 20.12 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 4.45 Total: -4.86 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -4.47 Total: -101.00 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.79 Total: -20.65 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -64.28 1.80 -62.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407357335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.544 kcal (2) G-P(sol) polarization free energy of solvation -64.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds