Wall clock time and date at job start Mon Mar 30 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47302 * 2 1 4 4 C 1.36942 * 120.00172 * 97.62548 * 3 2 1 5 5 H 1.07995 * 120.00197 * 162.71669 * 4 3 2 6 6 C 1.38814 * 119.99504 * 342.98886 * 4 3 2 7 7 N 1.31611 * 120.00420 * 350.77708 * 6 4 3 8 8 Si 1.86807 * 119.99657 * 170.77840 * 6 4 3 9 9 H 1.48507 * 109.47019 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47149 * 119.99652 * 8 6 4 11 11 H 1.48503 * 109.47024 * 240.00167 * 8 6 4 12 12 C 1.46495 * 120.00148 * 277.62839 * 3 2 1 13 13 C 1.50692 * 109.47166 * 275.63979 * 12 3 2 14 14 C 1.40315 * 126.43792 * 99.54471 * 13 12 3 15 15 C 1.36641 * 106.70418 * 179.97438 * 14 13 12 16 16 C 1.46469 * 125.99602 * 180.02562 * 15 14 13 17 17 O 1.21626 * 120.00132 * 359.97438 * 16 15 14 18 18 O 1.34901 * 120.00018 * 180.02562 * 16 15 14 19 19 C 1.45196 * 116.99772 * 179.97438 * 18 16 15 20 20 O 1.34933 * 108.00503 * 0.02562 * 15 14 13 21 21 C 1.33910 * 109.38557 * 359.76663 * 20 15 14 22 22 C 1.50703 * 125.61032 * 180.23723 * 21 20 15 23 23 H 1.09001 * 109.47183 * 299.99990 * 1 2 3 24 24 H 1.09000 * 109.47257 * 60.00148 * 1 2 3 25 25 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47183 * 240.00010 * 2 1 3 27 27 H 1.09000 * 109.47257 * 119.99852 * 2 1 3 28 28 H 0.97005 * 120.00081 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46919 * 35.64152 * 12 3 2 30 30 H 1.09003 * 109.47469 * 155.63774 * 12 3 2 31 31 H 1.07994 * 126.64567 * 359.94501 * 14 13 12 32 32 H 1.08997 * 109.47408 * 299.99203 * 19 18 16 33 33 H 1.08993 * 109.47349 * 60.00259 * 19 18 16 34 34 H 1.09003 * 109.47043 * 180.02562 * 19 18 16 35 35 H 1.08998 * 109.46904 * 272.22333 * 22 21 20 36 36 H 1.08991 * 109.47061 * 32.23182 * 22 21 20 37 37 H 1.09006 * 109.46887 * 152.22406 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3950 1.9743 1.1754 5 1 3.0051 2.8653 1.1595 6 6 1.9972 1.4270 2.3875 7 7 1.1141 0.4515 2.4110 8 14 2.7154 2.0753 3.9855 9 1 3.6801 3.1646 3.6887 10 1 1.6223 2.6014 4.8420 11 1 3.4151 0.9750 4.6961 12 6 2.1037 2.1280 -1.2574 13 6 3.4052 1.8059 -1.9455 14 6 3.5880 0.8994 -3.0007 15 6 4.9181 0.9227 -3.3126 16 6 5.5710 0.1323 -4.3587 17 8 4.9159 -0.6313 -5.0421 18 8 6.8991 0.2506 -4.5635 19 6 7.4787 -0.5637 -5.6168 20 8 5.5245 1.8016 -2.4877 21 6 4.6150 2.3397 -1.6653 22 6 4.8947 3.3688 -0.6005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8359 0.0693 3.2580 29 1 1.2719 1.8476 -1.9037 30 1 2.0576 3.1969 -1.0491 31 1 2.8252 0.2991 -3.4742 32 1 7.3092 -1.6175 -5.3963 33 1 7.0119 -0.3120 -6.5691 34 1 8.5503 -0.3730 -5.6754 35 1 5.1719 2.8665 0.3263 36 1 5.7125 4.0128 -0.9235 37 1 4.0017 3.9714 -0.4341 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522778411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:46 Heat of formation + Delta-G solvation = -41.910889 kcal Electronic energy + Delta-G solvation = -20651.955742 eV Core-core repulsion = 17397.601575 eV Total energy + Delta-G solvation = -3254.354167 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.37640 -40.10257 -36.50661 -36.25580 -33.34005 -31.80736 -30.94084 -29.19066 -28.58304 -26.98585 -25.39567 -23.25330 -22.49701 -20.93872 -20.60603 -19.35569 -17.57029 -16.99841 -16.70133 -16.54557 -15.71273 -15.18728 -14.97338 -13.90693 -13.64859 -13.52957 -13.32452 -13.01662 -12.82118 -12.59249 -12.51106 -12.25522 -11.95191 -11.74268 -11.34847 -11.06318 -10.91079 -10.88162 -10.82601 -10.59406 -10.43215 -9.97136 -9.78964 -9.42422 -9.32171 -8.40811 -8.06512 -6.79912 -5.69232 -3.16745 1.08216 2.43605 2.62365 3.13892 3.23834 3.36082 3.41953 3.44650 4.48689 4.83899 4.96723 5.04945 5.19144 5.20871 5.36572 5.44140 5.58990 5.69129 5.79411 5.88343 6.04461 6.11931 6.24343 6.38928 6.51649 6.58488 6.68834 6.84354 6.96576 7.12126 7.22828 7.29079 7.65575 7.73356 7.86929 8.14593 8.43908 9.26776 9.86459 10.33306 11.30401 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025131 B = 0.005174 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.893244 B = 5410.678169 C = 5951.971808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.167 3.833 3 N -0.590 5.590 4 C -0.245 4.245 5 H 0.074 0.926 6 C -0.006 4.006 7 N -0.904 5.904 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.291 1.291 11 H -0.291 1.291 12 C 0.210 3.790 13 C -0.192 4.192 14 C -0.080 4.080 15 C -0.100 4.100 16 C 0.558 3.442 17 O -0.497 6.497 18 O -0.352 6.352 19 C 0.037 3.963 20 O -0.160 6.160 21 C 0.048 3.952 22 C -0.072 4.072 23 H 0.087 0.913 24 H 0.007 0.993 25 H 0.019 0.981 26 H -0.004 1.004 27 H 0.096 0.904 28 H 0.250 0.750 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.156 0.844 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 2.244 -10.821 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.042 3.958 3 N -0.311 5.311 4 C -0.374 4.374 5 H 0.092 0.908 6 C -0.202 4.202 7 N -0.551 5.551 8 Si 0.735 3.265 9 H -0.205 1.205 10 H -0.218 1.218 11 H -0.218 1.218 12 C 0.082 3.918 13 C -0.196 4.196 14 C -0.100 4.100 15 C -0.149 4.149 16 C 0.404 3.596 17 O -0.387 6.387 18 O -0.268 6.268 19 C -0.057 4.057 20 O -0.056 6.056 21 C -0.005 4.005 22 C -0.128 4.128 23 H 0.106 0.894 24 H 0.026 0.974 25 H 0.038 0.962 26 H 0.014 0.986 27 H 0.114 0.886 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.174 0.826 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.607 1.978 -10.885 14.016 hybrid contribution 0.268 -0.116 0.663 0.724 sum 8.874 1.862 -10.222 13.664 Atomic orbital electron populations 1.22300 0.99344 0.98068 1.00600 1.20799 0.92268 0.84470 0.98271 1.44111 1.75010 1.10644 1.01293 1.19399 1.25274 1.09188 0.83526 0.90818 1.24896 0.98263 0.99328 0.97724 1.70089 1.32760 1.28275 1.23979 0.86190 0.78310 0.77988 0.84060 1.20469 1.21848 1.21843 1.19146 0.88916 0.95963 0.87789 1.21670 0.99349 0.99942 0.98629 1.21909 0.93823 0.97985 0.96297 1.20304 0.91839 1.02835 0.99949 1.19242 0.80472 0.79229 0.80651 1.90917 1.65377 1.36258 1.46190 1.86677 1.23500 1.62812 1.53843 1.23291 0.98551 0.94954 0.88900 1.84004 1.37533 1.45369 1.38706 1.22785 0.86890 0.97729 0.93129 1.20474 1.03520 0.94584 0.94269 0.89398 0.97399 0.96234 0.98596 0.88643 0.93942 0.93422 0.92028 0.82609 0.91710 0.91763 0.87982 0.88869 0.91284 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.67 37.15 0.36 -2.97 16 2 C 0.17 4.04 5.60 -4.04 -0.02 4.01 16 3 N -0.59 -13.94 2.52 -174.62 -0.44 -14.38 16 4 C -0.24 -6.13 9.69 -15.06 -0.15 -6.28 16 5 H 0.07 1.73 6.19 -52.49 -0.33 1.40 16 6 C -0.01 -0.15 5.18 -17.43 -0.09 -0.24 16 7 N -0.90 -24.60 8.06 55.49 0.45 -24.15 16 8 Si 0.90 20.76 29.56 -169.99 -5.03 15.74 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.21 4.15 5.85 -5.20 -0.03 4.12 16 13 C -0.19 -3.56 5.71 -104.94 -0.60 -4.16 16 14 C -0.08 -1.43 10.57 -39.38 -0.42 -1.84 16 15 C -0.10 -1.77 7.18 -36.85 -0.26 -2.03 16 16 C 0.56 9.21 7.93 34.05 0.27 9.48 16 17 O -0.50 -8.80 16.66 -19.36 -0.32 -9.12 16 18 O -0.35 -5.04 10.58 -42.48 -0.45 -5.49 16 19 C 0.04 0.36 10.57 101.05 1.07 1.42 16 20 O -0.16 -2.84 10.67 4.76 0.05 -2.79 16 21 C 0.05 0.84 7.31 -35.40 -0.26 0.58 16 22 C -0.07 -1.06 9.31 36.01 0.34 -0.73 16 23 H 0.09 2.28 6.28 -51.93 -0.33 1.95 16 24 H 0.01 0.15 7.92 -51.93 -0.41 -0.26 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.00 -0.10 8.13 -51.93 -0.42 -0.52 16 27 H 0.10 2.59 5.84 -51.93 -0.30 2.29 16 28 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.05 0.91 7.89 -51.93 -0.41 0.50 16 30 H 0.06 1.15 7.28 -51.93 -0.38 0.77 16 31 H 0.16 2.61 8.06 -52.49 -0.42 2.19 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.46 8.02 -51.93 -0.42 1.04 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.38 6.74 -51.93 -0.35 1.03 16 LS Contribution 315.29 15.07 4.75 4.75 Total: -1.00 -29.23 315.29 -5.80 -35.02 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.01 Total: -0.94 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.01 Total: -38.54 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.72 Total: -17.40 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.23 -5.80 -35.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522778411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.887 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds