Wall clock time and date at job start Mon Mar 30 2020 05:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47302 * 2 1 4 4 C 1.36942 * 120.00172 * 97.62548 * 3 2 1 5 5 H 1.07995 * 120.00197 * 162.71669 * 4 3 2 6 6 C 1.38814 * 119.99504 * 342.98886 * 4 3 2 7 7 N 1.31611 * 120.00420 * 350.77708 * 6 4 3 8 8 Si 1.86807 * 119.99657 * 170.77840 * 6 4 3 9 9 H 1.48507 * 109.47019 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47149 * 119.99652 * 8 6 4 11 11 H 1.48503 * 109.47024 * 240.00167 * 8 6 4 12 12 C 1.46495 * 120.00148 * 277.62839 * 3 2 1 13 13 C 1.50692 * 109.47166 * 275.63979 * 12 3 2 14 14 C 1.40315 * 126.43792 * 99.54471 * 13 12 3 15 15 C 1.36641 * 106.70418 * 179.97438 * 14 13 12 16 16 C 1.46469 * 125.99602 * 180.02562 * 15 14 13 17 17 O 1.21626 * 120.00132 * 359.97438 * 16 15 14 18 18 O 1.34901 * 120.00018 * 180.02562 * 16 15 14 19 19 C 1.45196 * 116.99772 * 179.97438 * 18 16 15 20 20 O 1.34933 * 108.00503 * 0.02562 * 15 14 13 21 21 C 1.33910 * 109.38557 * 359.76663 * 20 15 14 22 22 C 1.50703 * 125.61032 * 180.23723 * 21 20 15 23 23 H 1.09001 * 109.47183 * 299.99990 * 1 2 3 24 24 H 1.09000 * 109.47257 * 60.00148 * 1 2 3 25 25 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47183 * 240.00010 * 2 1 3 27 27 H 1.09000 * 109.47257 * 119.99852 * 2 1 3 28 28 H 0.97005 * 120.00081 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46919 * 35.64152 * 12 3 2 30 30 H 1.09003 * 109.47469 * 155.63774 * 12 3 2 31 31 H 1.07994 * 126.64567 * 359.94501 * 14 13 12 32 32 H 1.08997 * 109.47408 * 299.99203 * 19 18 16 33 33 H 1.08993 * 109.47349 * 60.00259 * 19 18 16 34 34 H 1.09003 * 109.47043 * 180.02562 * 19 18 16 35 35 H 1.08998 * 109.46904 * 272.22333 * 22 21 20 36 36 H 1.08991 * 109.47061 * 32.23182 * 22 21 20 37 37 H 1.09006 * 109.46887 * 152.22406 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3950 1.9743 1.1754 5 1 3.0051 2.8653 1.1595 6 6 1.9972 1.4270 2.3875 7 7 1.1141 0.4515 2.4110 8 14 2.7154 2.0753 3.9855 9 1 3.6801 3.1646 3.6887 10 1 1.6223 2.6014 4.8420 11 1 3.4151 0.9750 4.6961 12 6 2.1037 2.1280 -1.2574 13 6 3.4052 1.8059 -1.9455 14 6 3.5880 0.8994 -3.0007 15 6 4.9181 0.9227 -3.3126 16 6 5.5710 0.1323 -4.3587 17 8 4.9159 -0.6313 -5.0421 18 8 6.8991 0.2506 -4.5635 19 6 7.4787 -0.5637 -5.6168 20 8 5.5245 1.8016 -2.4877 21 6 4.6150 2.3397 -1.6653 22 6 4.8947 3.3688 -0.6005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8359 0.0693 3.2580 29 1 1.2719 1.8476 -1.9037 30 1 2.0576 3.1969 -1.0491 31 1 2.8252 0.2991 -3.4742 32 1 7.3092 -1.6175 -5.3963 33 1 7.0119 -0.3120 -6.5691 34 1 8.5503 -0.3730 -5.6754 35 1 5.1719 2.8665 0.3263 36 1 5.7125 4.0128 -0.9235 37 1 4.0017 3.9714 -0.4341 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522778411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:45 Heat of formation + Delta-G solvation = -57.208862 kcal Electronic energy + Delta-G solvation = -20652.619112 eV Core-core repulsion = 17397.601575 eV Total energy + Delta-G solvation = -3255.017537 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.74786 -41.30535 -38.04047 -37.67890 -34.89673 -33.11523 -32.78499 -30.98272 -29.66641 -28.31100 -26.85490 -25.08707 -23.76249 -22.54536 -22.16867 -20.72663 -19.03489 -18.37615 -18.17342 -17.91626 -17.08758 -16.70059 -16.46093 -15.45389 -15.32228 -15.02575 -14.41826 -14.36234 -14.29543 -14.03471 -13.83834 -13.68488 -13.17885 -13.13063 -13.10219 -12.74399 -12.64874 -12.38806 -12.17799 -12.05754 -11.92274 -11.77838 -11.60286 -11.32781 -10.80970 -10.34849 -9.45679 -8.68691 -7.64358 -5.12087 -0.24448 1.23046 1.26293 1.53573 1.56532 1.63766 1.78817 2.00591 2.61796 3.45075 3.64052 3.80469 3.88314 3.95937 4.24245 4.31081 4.34805 4.48452 4.65419 4.70560 4.74519 4.77354 4.82021 4.98713 5.02643 5.08771 5.10929 5.16628 5.27404 5.35899 5.45513 5.73017 5.89185 5.92513 6.21682 6.49273 6.49835 7.31345 7.99190 8.43169 9.34389 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025131 B = 0.005174 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.893244 B = 5410.678169 C = 5951.971808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.171 3.829 3 N -0.603 5.603 4 C -0.241 4.241 5 H 0.091 0.909 6 C -0.060 4.060 7 N -0.930 5.930 8 Si 0.959 3.041 9 H -0.260 1.260 10 H -0.300 1.300 11 H -0.304 1.304 12 C 0.213 3.787 13 C -0.210 4.210 14 C -0.087 4.087 15 C -0.108 4.108 16 C 0.561 3.439 17 O -0.514 6.514 18 O -0.357 6.357 19 C 0.027 3.973 20 O -0.161 6.161 21 C 0.051 3.949 22 C -0.072 4.072 23 H 0.059 0.941 24 H 0.021 0.979 25 H 0.028 0.972 26 H 0.003 0.997 27 H 0.064 0.936 28 H 0.240 0.760 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.999 3.300 -11.738 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.046 3.954 3 N -0.324 5.324 4 C -0.371 4.371 5 H 0.108 0.892 6 C -0.254 4.254 7 N -0.579 5.579 8 Si 0.789 3.211 9 H -0.183 1.183 10 H -0.228 1.228 11 H -0.232 1.232 12 C 0.086 3.914 13 C -0.214 4.214 14 C -0.107 4.107 15 C -0.158 4.158 16 C 0.408 3.592 17 O -0.406 6.406 18 O -0.273 6.273 19 C -0.065 4.065 20 O -0.058 6.058 21 C -0.002 4.002 22 C -0.128 4.128 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.021 0.979 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.180 0.820 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.155 0.845 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.110 3.062 -11.837 15.866 hybrid contribution -0.111 -0.451 0.828 0.949 sum 9.999 2.611 -11.009 15.100 Atomic orbital electron populations 1.22097 0.98621 0.98460 0.99747 1.20606 0.92810 0.85042 0.96958 1.44273 1.75172 1.10606 1.02351 1.19812 1.24256 1.09039 0.83945 0.89183 1.25567 0.99214 1.00215 1.00385 1.70276 1.34226 1.29687 1.23693 0.85300 0.77549 0.77472 0.80733 1.18348 1.22819 1.23181 1.19198 0.89712 0.96162 0.86297 1.21495 0.99210 1.01133 0.99517 1.22033 0.94350 0.98008 0.96345 1.20543 0.91972 1.02965 1.00273 1.19112 0.81232 0.78723 0.80141 1.90903 1.65974 1.36958 1.46775 1.86659 1.22053 1.63471 1.55149 1.23708 1.00311 0.94577 0.87900 1.84014 1.37611 1.45382 1.38762 1.23264 0.86524 0.97497 0.92947 1.20584 1.05005 0.94236 0.92938 0.92187 0.96017 0.95278 0.97865 0.91817 0.94966 0.92902 0.90823 0.82024 0.91498 0.91051 0.84466 0.89666 0.88159 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 9.67 71.98 0.70 -5.29 16 2 C 0.17 8.29 5.60 86.38 0.48 8.78 16 3 N -0.60 -28.03 2.52 -706.37 -1.78 -29.81 16 4 C -0.24 -11.83 9.69 84.03 0.81 -11.02 16 5 H 0.09 4.04 6.19 -2.91 -0.02 4.02 16 6 C -0.06 -3.15 5.18 84.86 0.44 -2.71 16 7 N -0.93 -51.52 8.06 21.65 0.17 -51.35 16 8 Si 0.96 42.60 29.56 68.60 2.03 44.63 16 9 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 10 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 12 C 0.21 8.11 5.85 85.63 0.50 8.61 16 13 C -0.21 -7.49 5.71 -20.07 -0.11 -7.61 16 14 C -0.09 -3.04 10.57 22.40 0.24 -2.80 16 15 C -0.11 -3.71 7.18 24.04 0.17 -3.53 16 16 C 0.56 17.88 7.93 69.97 0.55 18.43 16 17 O -0.51 -17.71 16.66 19.42 0.32 -17.39 16 18 O -0.36 -9.58 10.58 -56.77 -0.60 -10.18 16 19 C 0.03 0.47 10.57 113.37 1.20 1.67 16 20 O -0.16 -5.47 10.67 -4.81 -0.05 -5.52 16 21 C 0.05 1.69 7.31 24.98 0.18 1.87 16 22 C -0.07 -1.91 9.31 71.24 0.66 -1.25 16 23 H 0.06 3.13 6.28 -2.39 -0.01 3.12 16 24 H 0.02 0.89 7.92 -2.39 -0.02 0.87 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.00 0.15 8.13 -2.39 -0.02 0.13 16 27 H 0.06 3.52 5.84 -2.39 -0.01 3.51 16 28 H 0.24 13.24 8.31 -92.70 -0.77 12.47 16 29 H 0.05 1.94 7.89 -2.39 -0.02 1.93 16 30 H 0.07 2.60 7.28 -2.39 -0.02 2.58 16 31 H 0.16 5.31 8.06 -2.91 -0.02 5.28 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 2.46 8.02 -2.39 -0.02 2.44 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.10 2.61 6.74 -2.38 -0.02 2.60 16 Total: -1.00 -61.83 315.29 6.99 -54.84 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.07 Total: 9.63 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.83 Total: 5.15 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -1.61 Total: -81.16 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.33 Total: -33.09 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -61.83 6.99 -54.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522778411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.370 kcal (2) G-P(sol) polarization free energy of solvation -61.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds