Wall clock time and date at job start Mon Mar 30 2020 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99615 * 2 1 4 4 H 1.48499 * 109.46978 * 239.99816 * 3 2 1 5 5 H 1.48499 * 109.47346 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46598 * 120.00066 * 3 2 1 7 7 C 1.37873 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46933 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47186 * 180.02562 * 11 10 9 13 13 C 1.47019 * 111.00228 * 313.63550 * 12 11 10 14 14 C 1.53093 * 109.25898 * 177.60758 * 13 12 11 15 15 O 1.43015 * 109.25957 * 56.84777 * 14 13 12 16 16 C 1.43013 * 113.74057 * 301.32835 * 15 14 13 17 17 C 1.47010 * 111.00342 * 190.00108 * 12 11 10 18 18 H 1.09000 * 109.54147 * 62.43385 * 17 12 11 19 19 C 1.50704 * 109.50551 * 302.32743 * 17 12 11 20 20 N 1.31135 * 126.54829 * 135.21626 * 19 17 12 21 21 C 1.34496 * 105.61166 * 180.02562 * 20 19 17 22 22 N 1.29951 * 107.42775 * 359.97438 * 21 20 19 23 23 O 1.21302 * 110.24733 * 359.70747 * 22 21 20 24 24 H 0.97004 * 120.00442 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46911 * 60.00148 * 9 7 2 26 26 H 1.09002 * 109.46990 * 300.00429 * 9 7 2 27 27 H 1.09003 * 109.47259 * 60.00284 * 10 9 7 28 28 H 1.09002 * 109.47564 * 300.00000 * 10 9 7 29 29 H 1.08997 * 109.47019 * 60.00519 * 11 10 9 30 30 H 1.08998 * 109.47054 * 299.99834 * 11 10 9 31 31 H 1.08997 * 109.50402 * 57.66872 * 13 12 11 32 32 H 1.08997 * 109.50566 * 297.54330 * 13 12 11 33 33 H 1.09007 * 109.50521 * 296.91132 * 14 13 12 34 34 H 1.09004 * 109.50557 * 176.78550 * 14 13 12 35 35 H 1.08995 * 109.51000 * 178.60143 * 16 15 14 36 36 H 1.09003 * 109.50697 * 298.73798 * 16 15 14 37 37 H 1.07996 * 126.28863 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6619 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4350 -6.1035 -0.0006 13 6 3.4980 -5.8885 -0.9931 14 6 4.5006 -7.0430 -0.9175 15 8 3.8120 -8.2798 -1.1209 16 6 2.7704 -8.5219 -0.1714 17 6 1.7503 -7.3823 -0.2395 18 1 1.2854 -7.3684 -1.2253 19 6 0.6920 -7.5908 0.8130 20 7 -0.5358 -8.0063 0.6143 21 6 -1.1082 -8.0393 1.8309 22 7 -0.2157 -7.6499 2.6916 23 8 0.8273 -7.3934 2.1278 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6042 0.8895 28 1 2.8720 -3.6042 -0.8905 29 1 0.8541 -5.0445 -0.8914 30 1 0.8534 -5.0450 0.8886 31 1 4.0083 -4.9488 -0.7820 32 1 3.0617 -5.8502 -1.9912 33 1 4.9763 -7.0483 0.0633 34 1 5.2593 -6.9174 -1.6900 35 1 2.2777 -9.4658 -0.4043 36 1 3.1957 -8.5702 0.8311 37 1 -2.1230 -8.3350 2.0521 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589161406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:16 Heat of formation + Delta-G solvation = 30.211145 kcal Electronic energy + Delta-G solvation = -20657.309228 eV Core-core repulsion = 17438.375258 eV Total energy + Delta-G solvation = -3218.933970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.66303 -39.94878 -36.55059 -35.80322 -34.01202 -33.05999 -31.32976 -30.71414 -28.18140 -25.61531 -25.17169 -24.46639 -22.65535 -22.58480 -20.74682 -19.86665 -18.14906 -17.89461 -16.63672 -16.32310 -16.08936 -15.76135 -15.34358 -15.16859 -14.76071 -14.46950 -13.99413 -13.75146 -12.98978 -12.67786 -12.45693 -12.17316 -11.95962 -11.74427 -11.62320 -11.46176 -11.20429 -10.94141 -10.85588 -10.59860 -10.55318 -10.33689 -9.79898 -9.75194 -9.42835 -9.12202 -8.48529 -8.37698 -6.02663 -4.05721 1.04015 2.15924 2.63939 3.31570 3.31780 3.36295 3.38517 3.57545 3.95474 4.18405 4.43341 4.46337 4.80396 4.84343 4.87946 5.09268 5.17227 5.33159 5.39167 5.45158 5.56272 5.61296 5.66858 5.76218 5.81720 5.82927 6.09121 6.47104 6.55345 6.76412 6.85879 6.97282 7.08812 7.61724 7.74875 7.95847 8.07303 8.37738 9.00853 9.58643 11.08717 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019793 B = 0.004845 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.290014 B = 5777.954152 C = 6900.917967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.110 4.110 11 C 0.052 3.948 12 N -0.530 5.530 13 C 0.015 3.985 14 C 0.058 3.942 15 O -0.376 6.376 16 C 0.075 3.925 17 C 0.138 3.862 18 H 0.096 0.904 19 C 0.198 3.802 20 N -0.483 5.483 21 C 0.144 3.856 22 N -0.385 5.385 23 O 0.097 5.903 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.015 0.985 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.593 -18.041 -0.535 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.074 4.074 12 N -0.256 5.256 13 C -0.112 4.112 14 C -0.019 4.019 15 O -0.294 6.294 16 C -0.003 4.003 17 C 0.027 3.973 18 H 0.114 0.886 19 C -0.023 4.023 20 N -0.217 5.217 21 C -0.150 4.150 22 N -0.090 5.090 23 O 0.038 5.962 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.178 -18.156 0.418 18.635 hybrid contribution -0.342 1.328 -0.556 1.480 sum 3.836 -16.828 -0.138 17.260 Atomic orbital electron populations 1.69955 1.06110 1.26778 1.50641 1.25028 0.94839 0.99307 0.95251 0.86645 0.79576 0.83071 0.78637 1.20214 1.21285 1.20186 1.21166 0.92971 0.90917 1.50872 0.92649 1.19057 0.93951 0.91290 0.97190 1.21789 0.99428 0.92440 1.01078 1.22431 0.93928 0.90528 1.00521 1.62444 1.13178 1.00678 1.49334 1.22969 0.93398 1.00868 0.94014 1.22858 0.94000 0.82409 1.02628 1.88028 1.48347 1.39396 1.53639 1.22625 0.87544 0.95757 0.94412 1.20841 0.90231 0.94124 0.92128 0.88607 1.28328 0.93873 0.94706 0.85388 1.71959 1.04591 1.19998 1.25140 1.27495 1.02898 1.00709 0.83853 1.74716 0.94071 1.17712 1.22467 1.85370 1.29740 1.61402 1.19728 0.92908 0.96747 0.96649 0.92146 0.92764 0.94461 0.91385 0.87298 0.93211 0.91678 0.87862 0.87771 0.91224 0.75568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.16 4.42 -26.74 -0.12 -2.28 16 11 C 0.05 0.89 4.73 -3.82 -0.02 0.87 16 12 N -0.53 -7.29 4.68 -227.73 -1.07 -8.36 16 13 C 0.01 0.18 4.94 -3.71 -0.02 0.16 16 14 C 0.06 0.57 7.01 37.21 0.26 0.83 16 15 O -0.38 -4.13 10.83 -35.23 -0.38 -4.51 16 16 C 0.08 0.76 6.27 37.21 0.23 0.99 16 17 C 0.14 1.68 2.49 -68.75 -0.17 1.51 16 18 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 19 C 0.20 2.67 5.93 -13.05 -0.08 2.60 16 20 N -0.48 -6.60 11.55 -13.74 -0.16 -6.76 16 21 C 0.14 1.78 13.11 -91.33 -1.20 0.58 16 22 N -0.38 -5.55 12.16 27.68 0.34 -5.21 16 23 O 0.10 1.43 11.20 18.10 0.20 1.63 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 1.01 6.28 -51.93 -0.33 0.68 16 29 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.07 1.26 7.33 -51.93 -0.38 0.87 16 31 H 0.11 1.34 6.05 -51.93 -0.31 1.03 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.23 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -31.78 308.12 -7.57 -39.35 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -5.21 Total: -3.36 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -1.66 Total: -7.67 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.15 Total: -46.59 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: -0.18 Total: -2.88 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.78 -7.57 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589161406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.560 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds