Wall clock time and date at job start Mon Mar 30 2020 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99615 * 2 1 4 4 H 1.48499 * 109.46978 * 239.99816 * 3 2 1 5 5 H 1.48499 * 109.47346 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46598 * 120.00066 * 3 2 1 7 7 C 1.37873 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46933 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47186 * 180.02562 * 11 10 9 13 13 C 1.47019 * 111.00228 * 313.63550 * 12 11 10 14 14 C 1.53093 * 109.25898 * 177.60758 * 13 12 11 15 15 O 1.43015 * 109.25957 * 56.84777 * 14 13 12 16 16 C 1.43013 * 113.74057 * 301.32835 * 15 14 13 17 17 C 1.47010 * 111.00342 * 190.00108 * 12 11 10 18 18 H 1.09000 * 109.54147 * 62.43385 * 17 12 11 19 19 C 1.50704 * 109.50551 * 302.32743 * 17 12 11 20 20 N 1.31135 * 126.54829 * 135.21626 * 19 17 12 21 21 C 1.34496 * 105.61166 * 180.02562 * 20 19 17 22 22 N 1.29951 * 107.42775 * 359.97438 * 21 20 19 23 23 O 1.21302 * 110.24733 * 359.70747 * 22 21 20 24 24 H 0.97004 * 120.00442 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46911 * 60.00148 * 9 7 2 26 26 H 1.09002 * 109.46990 * 300.00429 * 9 7 2 27 27 H 1.09003 * 109.47259 * 60.00284 * 10 9 7 28 28 H 1.09002 * 109.47564 * 300.00000 * 10 9 7 29 29 H 1.08997 * 109.47019 * 60.00519 * 11 10 9 30 30 H 1.08998 * 109.47054 * 299.99834 * 11 10 9 31 31 H 1.08997 * 109.50402 * 57.66872 * 13 12 11 32 32 H 1.08997 * 109.50566 * 297.54330 * 13 12 11 33 33 H 1.09007 * 109.50521 * 296.91132 * 14 13 12 34 34 H 1.09004 * 109.50557 * 176.78550 * 14 13 12 35 35 H 1.08995 * 109.51000 * 178.60143 * 16 15 14 36 36 H 1.09003 * 109.50697 * 298.73798 * 16 15 14 37 37 H 1.07996 * 126.28863 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6619 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4350 -6.1035 -0.0006 13 6 3.4980 -5.8885 -0.9931 14 6 4.5006 -7.0430 -0.9175 15 8 3.8120 -8.2798 -1.1209 16 6 2.7704 -8.5219 -0.1714 17 6 1.7503 -7.3823 -0.2395 18 1 1.2854 -7.3684 -1.2253 19 6 0.6920 -7.5908 0.8130 20 7 -0.5358 -8.0063 0.6143 21 6 -1.1082 -8.0393 1.8309 22 7 -0.2157 -7.6499 2.6916 23 8 0.8273 -7.3934 2.1278 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6042 0.8895 28 1 2.8720 -3.6042 -0.8905 29 1 0.8541 -5.0445 -0.8914 30 1 0.8534 -5.0450 0.8886 31 1 4.0083 -4.9488 -0.7820 32 1 3.0617 -5.8502 -1.9912 33 1 4.9763 -7.0483 0.0633 34 1 5.2593 -6.9174 -1.6900 35 1 2.2777 -9.4658 -0.4043 36 1 3.1957 -8.5702 0.8311 37 1 -2.1230 -8.3350 2.0521 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589161406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:16 Heat of formation + Delta-G solvation = 6.647822 kcal Electronic energy + Delta-G solvation = -20658.331010 eV Core-core repulsion = 17438.375258 eV Total energy + Delta-G solvation = -3219.955752 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.70256 -40.92418 -37.68115 -36.86301 -35.67625 -34.44429 -33.01972 -31.65902 -29.62081 -27.22366 -26.13352 -25.48373 -24.33369 -23.62047 -22.03436 -21.23342 -19.21863 -18.97302 -18.46206 -17.41180 -17.16658 -16.80867 -16.52418 -16.37805 -16.21558 -15.66708 -15.29191 -15.02736 -14.29111 -14.01401 -13.84040 -13.57173 -13.38595 -13.13822 -12.92285 -12.71266 -12.51480 -12.47292 -12.25867 -12.12792 -11.86356 -11.51500 -11.41105 -11.29889 -11.18797 -10.68622 -10.56391 -9.61589 -8.21594 -6.33361 -0.01001 1.16246 1.40234 1.43513 1.51299 1.62170 2.27761 2.40998 2.69321 3.03840 3.12095 3.23947 3.53901 3.80767 3.89921 3.95588 4.03044 4.19639 4.32202 4.39027 4.52910 4.61648 4.64303 4.68996 4.75255 4.81166 4.90073 4.99447 4.99732 5.17482 5.46995 5.63087 5.69585 5.76920 5.81435 6.05006 6.21259 6.83580 7.03513 7.36600 8.90408 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019793 B = 0.004845 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.290014 B = 5777.954152 C = 6900.917967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.068 3.932 12 N -0.531 5.531 13 C 0.011 3.989 14 C 0.062 3.938 15 O -0.382 6.382 16 C 0.081 3.919 17 C 0.139 3.861 18 H 0.097 0.903 19 C 0.198 3.802 20 N -0.498 5.498 21 C 0.153 3.847 22 N -0.408 5.408 23 O 0.079 5.921 24 H 0.263 0.737 25 H -0.011 1.011 26 H -0.017 1.017 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.157 -18.651 -0.984 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.059 4.059 12 N -0.257 5.257 13 C -0.115 4.115 14 C -0.014 4.014 15 O -0.300 6.300 16 C 0.002 3.998 17 C 0.028 3.972 18 H 0.115 0.885 19 C -0.023 4.023 20 N -0.233 5.233 21 C -0.140 4.140 22 N -0.117 5.117 23 O 0.023 5.977 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.001 0.999 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.093 0.907 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 5.789 -18.782 -0.040 19.654 hybrid contribution -0.887 1.478 -0.429 1.776 sum 4.901 -17.304 -0.469 17.991 Atomic orbital electron populations 1.70104 1.08005 1.27863 1.51723 1.26026 0.95727 1.03576 0.94664 0.85473 0.78226 0.77851 0.79347 1.18775 1.21097 1.19130 1.21646 0.93716 0.92014 1.50511 0.91602 1.18960 0.94423 0.93451 0.94383 1.21521 0.98110 0.91620 1.01765 1.22054 0.93895 0.90707 0.99272 1.62376 1.12698 1.00194 1.50454 1.23083 0.93167 1.01975 0.93322 1.22952 0.93505 0.80954 1.04027 1.88032 1.48382 1.39695 1.53917 1.22696 0.86926 0.95419 0.94726 1.20993 0.90598 0.93910 0.91651 0.88542 1.28616 0.94202 0.94124 0.85337 1.71987 1.04767 1.20660 1.25838 1.28240 1.03913 0.98861 0.83034 1.74707 0.94517 1.19182 1.23292 1.85341 1.30150 1.62039 1.20148 0.92821 0.99265 0.99866 0.92145 0.91175 0.95179 0.93335 0.87647 0.93288 0.91010 0.85400 0.85843 0.90690 0.71949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.09 -3.67 4.42 30.59 0.14 -3.54 16 11 C 0.07 2.35 4.73 86.30 0.41 2.76 16 12 N -0.53 -14.19 4.68 -874.40 -4.09 -18.28 16 13 C 0.01 0.26 4.94 86.31 0.43 0.68 16 14 C 0.06 1.05 7.01 72.01 0.50 1.56 16 15 O -0.38 -7.40 10.83 -148.98 -1.61 -9.01 16 16 C 0.08 1.46 6.27 72.02 0.45 1.92 16 17 C 0.14 3.25 2.49 44.18 0.11 3.36 16 18 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 19 C 0.20 5.26 5.93 88.38 0.52 5.78 16 20 N -0.50 -13.23 11.55 -315.44 -3.64 -16.88 16 21 C 0.15 3.62 13.11 180.59 2.37 5.99 16 22 N -0.41 -11.66 12.16 -70.51 -0.86 -12.52 16 23 O 0.08 2.31 11.20 74.83 0.84 3.14 16 24 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.07 2.55 6.28 -2.39 -0.01 2.54 16 29 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 30 H 0.05 1.85 7.33 -2.39 -0.02 1.84 16 31 H 0.11 2.42 6.05 -2.39 -0.01 2.40 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.15 8.14 -2.38 -0.02 1.14 16 34 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.26 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -69.11 308.12 -0.22 -69.33 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.06 Total: 5.58 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 5.77 Total: -10.00 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -8.31 Total: -105.08 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.77 Total: -5.87 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -69.11 -0.22 -69.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589161406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.976 kcal (2) G-P(sol) polarization free energy of solvation -69.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds