Wall clock time and date at job start Mon Mar 30 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29937 * 126.28941 * 2 1 4 4 O 1.21300 * 110.25361 * 179.97438 * 3 2 1 5 5 C 1.33643 * 109.80765 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.54955 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47086 * 165.02729 * 6 5 4 8 8 C 1.53000 * 109.47051 * 285.02412 * 6 5 4 9 9 N 1.46495 * 109.47229 * 45.02259 * 6 5 4 10 10 C 1.46501 * 120.00277 * 306.47957 * 9 6 5 11 11 C 1.34784 * 120.00116 * 126.47487 * 9 6 5 12 12 O 1.21278 * 120.00177 * 184.26353 * 11 9 6 13 13 C 1.50698 * 119.99773 * 4.25906 * 11 9 6 14 14 H 1.09011 * 109.47044 * 40.98991 * 13 11 9 15 15 C 1.53004 * 109.47568 * 280.99457 * 13 11 9 16 16 C 1.50703 * 109.47124 * 160.98765 * 13 11 9 17 17 H 1.07995 * 119.99812 * 0.02562 * 16 13 11 18 18 C 1.37875 * 120.00149 * 180.02562 * 16 13 11 19 19 N 1.31522 * 119.99970 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 120.00051 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47186 * 60.00323 * 20 18 16 22 22 H 1.48501 * 109.47069 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47057 * 300.00011 * 20 18 16 24 24 N 1.31129 * 106.90055 * 359.97438 * 5 4 3 25 25 H 1.08991 * 109.47347 * 89.97309 * 1 2 3 26 26 H 1.08998 * 109.47478 * 209.98255 * 1 2 3 27 27 H 1.09008 * 109.46546 * 329.97561 * 1 2 3 28 28 H 1.09007 * 109.47138 * 180.02562 * 8 6 5 29 29 H 1.09002 * 109.47419 * 299.99618 * 8 6 5 30 30 H 1.08992 * 109.47514 * 60.00437 * 8 6 5 31 31 H 1.08995 * 109.47329 * 94.01464 * 10 9 6 32 32 H 1.08997 * 109.46881 * 214.01851 * 10 9 6 33 33 H 1.09004 * 109.46551 * 334.01072 * 10 9 6 34 34 H 1.08994 * 109.46938 * 173.26167 * 15 13 11 35 35 H 1.09002 * 109.46502 * 293.26135 * 15 13 11 36 36 H 1.09002 * 109.47147 * 53.25823 * 15 13 11 37 37 H 0.96991 * 120.00094 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0473 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5298 -0.6213 0.0003 6 6 4.7969 -1.4371 0.0003 7 1 4.5649 -2.4686 0.2656 8 6 5.4281 -1.3987 -1.3929 9 7 5.7359 -0.8809 0.9774 10 6 6.0945 0.5385 0.9230 11 6 6.2700 -1.6749 1.9266 12 8 6.9864 -1.1998 2.7821 13 6 5.9769 -3.1531 1.9249 14 1 6.0023 -3.5274 0.9013 15 6 4.5903 -3.3988 2.5233 16 6 7.0142 -3.8719 2.7485 17 1 7.8062 -3.3140 3.2258 18 6 6.9520 -5.2417 2.8927 19 7 5.9878 -5.9211 2.3110 20 14 8.2374 -6.1325 3.9142 21 1 8.2016 -5.6231 5.3086 22 1 7.9493 -7.5893 3.9114 23 1 9.5833 -5.8935 3.3342 24 7 2.3029 -1.0842 0.0002 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3633 0.8899 0.5143 28 1 6.3444 -1.9892 -1.3931 29 1 4.7295 -1.8126 -2.1200 30 1 5.6602 -0.3673 -1.6583 31 1 5.4449 1.1033 1.5916 32 1 7.1320 0.6633 1.2332 33 1 5.9736 0.9049 -0.0965 34 1 4.3285 -4.4511 2.4133 35 1 4.5992 -3.1352 3.5809 36 1 3.8556 -2.7851 2.0020 37 1 5.9439 -6.8846 2.4127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597827475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:40 Heat of formation + Delta-G solvation = 33.702717 kcal Electronic energy + Delta-G solvation = -21143.389876 eV Core-core repulsion = 17924.607313 eV Total energy + Delta-G solvation = -3218.782564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.55756 -39.45668 -36.30171 -35.95901 -33.86542 -32.77816 -30.74500 -30.42010 -29.15936 -26.73882 -25.25065 -24.80739 -23.31162 -22.16789 -21.10751 -18.72775 -18.10175 -17.26387 -16.64827 -16.07778 -15.67534 -14.98685 -14.49333 -14.28944 -14.04466 -13.69871 -13.19190 -13.15607 -12.95803 -12.62162 -12.50248 -12.35788 -12.20248 -11.71720 -11.60777 -11.36945 -11.22334 -11.00618 -10.96141 -10.74760 -10.65622 -10.32880 -10.02938 -9.91131 -9.04720 -8.71342 -8.47164 -8.36843 -6.06879 -4.10171 1.12681 2.20948 2.76573 3.23190 3.34844 3.37769 3.42881 3.55147 3.75335 4.05222 4.43666 4.79048 4.96533 5.16844 5.22093 5.23240 5.28064 5.31416 5.49021 5.64473 5.70331 5.78920 5.83185 5.93864 5.98526 6.12037 6.16608 6.58212 6.74917 6.82039 6.90755 7.35931 7.68112 7.81811 7.99460 8.17068 8.26880 8.95183 9.02921 9.54982 11.01094 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.005435 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.763150 B = 5150.639536 C = 5635.107123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.165 3.835 3 N -0.392 5.392 4 O 0.079 5.921 5 C 0.186 3.814 6 C 0.227 3.773 7 H 0.152 0.848 8 C -0.163 4.163 9 N -0.628 5.628 10 C 0.082 3.918 11 C 0.525 3.475 12 O -0.529 6.529 13 C 0.029 3.971 14 H 0.051 0.949 15 C -0.133 4.133 16 C -0.503 4.503 17 H 0.071 0.929 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.901 3.099 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 N -0.473 5.473 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.036 0.964 36 H 0.013 0.987 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 9.393 -8.844 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 N -0.102 5.102 4 O 0.022 5.978 5 C -0.036 4.036 6 C 0.120 3.880 7 H 0.169 0.831 8 C -0.222 4.222 9 N -0.366 5.366 10 C -0.061 4.061 11 C 0.317 3.683 12 O -0.403 6.403 13 C 0.008 3.992 14 H 0.068 0.932 15 C -0.191 4.191 16 C -0.542 4.542 17 H 0.090 0.910 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 N -0.207 5.207 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.056 0.944 36 H 0.032 0.968 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.016 9.976 -8.350 15.281 hybrid contribution 0.627 -0.434 0.504 0.914 sum -7.388 9.542 -7.846 14.394 Atomic orbital electron populations 1.20120 0.83010 1.04670 1.04121 1.25927 1.00587 0.83599 1.00623 1.74586 0.89603 1.24153 1.21833 1.85306 1.22139 1.24875 1.65503 1.29432 0.97313 0.82043 0.94786 1.19843 0.79807 0.96685 0.91669 0.83054 1.22246 1.02588 1.03542 0.93783 1.48307 1.45798 1.10118 1.32330 1.21594 1.01796 0.81419 1.01250 1.22171 0.77322 0.90585 0.78244 1.90551 1.37198 1.76632 1.35926 1.18955 0.96356 0.84559 0.99348 0.93153 1.21800 0.94540 1.03759 0.98991 1.21010 1.10705 0.91571 1.30900 0.91049 1.24927 0.95960 0.97364 0.95730 1.69865 1.31932 1.07552 1.43936 0.86500 0.81712 0.78055 0.80854 1.20166 1.21324 1.20175 1.71936 0.99428 1.29245 1.20090 0.89427 0.88908 0.89679 0.89276 0.90678 0.91618 0.93388 0.90533 0.91525 0.88808 0.94443 0.96801 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 36.01 0.38 -0.19 16 2 C 0.17 2.33 8.22 -156.38 -1.28 1.04 16 3 N -0.39 -5.91 12.16 30.89 0.38 -5.54 16 4 O 0.08 1.19 9.49 18.10 0.17 1.36 16 5 C 0.19 2.85 7.16 -13.06 -0.09 2.76 16 6 C 0.23 3.45 2.38 -69.08 -0.16 3.29 16 7 H 0.15 2.55 4.52 -51.93 -0.23 2.31 16 8 C -0.16 -1.90 9.26 37.16 0.34 -1.56 16 9 N -0.63 -11.03 2.75 -175.26 -0.48 -11.51 16 10 C 0.08 1.22 8.68 59.85 0.52 1.74 16 11 C 0.52 11.76 6.84 -10.98 -0.08 11.68 16 12 O -0.53 -13.54 15.36 5.56 0.09 -13.45 16 13 C 0.03 0.69 1.77 -92.92 -0.16 0.53 16 14 H 0.05 1.20 7.04 -51.92 -0.37 0.83 16 15 C -0.13 -3.09 8.43 37.16 0.31 -2.77 16 16 C -0.50 -13.88 8.34 -34.44 -0.29 -14.17 16 17 H 0.07 2.07 6.92 -52.49 -0.36 1.71 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -24.37 11.40 55.43 0.63 -23.74 16 20 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 N -0.47 -7.45 11.55 -9.87 -0.11 -7.57 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.67 6.96 -51.93 -0.36 0.31 16 31 H 0.05 0.72 7.96 -51.93 -0.41 0.31 16 32 H 0.08 1.18 7.61 -51.93 -0.40 0.79 16 33 H 0.07 0.79 6.48 -51.93 -0.34 0.45 16 34 H 0.09 2.33 6.28 -51.93 -0.33 2.01 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.01 0.27 6.53 -51.93 -0.34 -0.07 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 307.91 15.07 4.64 4.64 Total: -1.00 -31.48 307.91 -5.13 -36.61 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.81 Total: -1.06 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.61 Total: 3.92 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.41 Total: -48.35 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.26 Total: -12.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.48 -5.13 -36.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597827475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.308 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds