Wall clock time and date at job start Mon Mar 30 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29937 * 126.28941 * 2 1 4 4 O 1.21300 * 110.25361 * 179.97438 * 3 2 1 5 5 C 1.33643 * 109.80765 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.54955 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47086 * 165.02729 * 6 5 4 8 8 C 1.53000 * 109.47051 * 285.02412 * 6 5 4 9 9 N 1.46495 * 109.47229 * 45.02259 * 6 5 4 10 10 C 1.46501 * 120.00277 * 306.47957 * 9 6 5 11 11 C 1.34784 * 120.00116 * 126.47487 * 9 6 5 12 12 O 1.21278 * 120.00177 * 184.26353 * 11 9 6 13 13 C 1.50698 * 119.99773 * 4.25906 * 11 9 6 14 14 H 1.09011 * 109.47044 * 40.98991 * 13 11 9 15 15 C 1.53004 * 109.47568 * 280.99457 * 13 11 9 16 16 C 1.50703 * 109.47124 * 160.98765 * 13 11 9 17 17 H 1.07995 * 119.99812 * 0.02562 * 16 13 11 18 18 C 1.37875 * 120.00149 * 180.02562 * 16 13 11 19 19 N 1.31522 * 119.99970 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 120.00051 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47186 * 60.00323 * 20 18 16 22 22 H 1.48501 * 109.47069 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47057 * 300.00011 * 20 18 16 24 24 N 1.31129 * 106.90055 * 359.97438 * 5 4 3 25 25 H 1.08991 * 109.47347 * 89.97309 * 1 2 3 26 26 H 1.08998 * 109.47478 * 209.98255 * 1 2 3 27 27 H 1.09008 * 109.46546 * 329.97561 * 1 2 3 28 28 H 1.09007 * 109.47138 * 180.02562 * 8 6 5 29 29 H 1.09002 * 109.47419 * 299.99618 * 8 6 5 30 30 H 1.08992 * 109.47514 * 60.00437 * 8 6 5 31 31 H 1.08995 * 109.47329 * 94.01464 * 10 9 6 32 32 H 1.08997 * 109.46881 * 214.01851 * 10 9 6 33 33 H 1.09004 * 109.46551 * 334.01072 * 10 9 6 34 34 H 1.08994 * 109.46938 * 173.26167 * 15 13 11 35 35 H 1.09002 * 109.46502 * 293.26135 * 15 13 11 36 36 H 1.09002 * 109.47147 * 53.25823 * 15 13 11 37 37 H 0.96991 * 120.00094 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0473 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5298 -0.6213 0.0003 6 6 4.7969 -1.4371 0.0003 7 1 4.5649 -2.4686 0.2656 8 6 5.4281 -1.3987 -1.3929 9 7 5.7359 -0.8809 0.9774 10 6 6.0945 0.5385 0.9230 11 6 6.2700 -1.6749 1.9266 12 8 6.9864 -1.1998 2.7821 13 6 5.9769 -3.1531 1.9249 14 1 6.0023 -3.5274 0.9013 15 6 4.5903 -3.3988 2.5233 16 6 7.0142 -3.8719 2.7485 17 1 7.8062 -3.3140 3.2258 18 6 6.9520 -5.2417 2.8927 19 7 5.9878 -5.9211 2.3110 20 14 8.2374 -6.1325 3.9142 21 1 8.2016 -5.6231 5.3086 22 1 7.9493 -7.5893 3.9114 23 1 9.5833 -5.8935 3.3342 24 7 2.3029 -1.0842 0.0002 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3633 0.8899 0.5143 28 1 6.3444 -1.9892 -1.3931 29 1 4.7295 -1.8126 -2.1200 30 1 5.6602 -0.3673 -1.6583 31 1 5.4449 1.1033 1.5916 32 1 7.1320 0.6633 1.2332 33 1 5.9736 0.9049 -0.0965 34 1 4.3285 -4.4511 2.4133 35 1 4.5992 -3.1352 3.5809 36 1 3.8556 -2.7851 2.0020 37 1 5.9439 -6.8846 2.4127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597827475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:39 Heat of formation + Delta-G solvation = 12.003616 kcal Electronic energy + Delta-G solvation = -21144.330820 eV Core-core repulsion = 17924.607313 eV Total energy + Delta-G solvation = -3219.723507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.69143 -41.08391 -37.75016 -37.12690 -35.84798 -33.99149 -32.66006 -31.61130 -30.06897 -28.15120 -27.26258 -26.01442 -24.52072 -23.80361 -22.43955 -20.21634 -19.25949 -18.69793 -18.25118 -17.73510 -17.27920 -16.54998 -16.28286 -15.61666 -15.11326 -14.81480 -14.74106 -14.48017 -14.32909 -13.92812 -13.73134 -13.46565 -13.31395 -13.21708 -12.95652 -12.86577 -12.74897 -12.66735 -12.42151 -12.31651 -12.26292 -12.09111 -12.01925 -11.07919 -11.02826 -10.62279 -10.36528 -9.92008 -8.14128 -6.24017 -0.03748 1.09540 1.44412 1.45409 1.50828 1.54362 1.83665 1.92085 2.46159 2.65679 3.01081 3.16419 3.69377 3.83312 3.87177 4.05757 4.44007 4.45375 4.57126 4.58837 4.61805 4.67461 4.71248 4.76760 4.83383 4.84196 4.92886 4.97576 5.08539 5.18878 5.37380 5.47872 5.71131 5.87790 6.09616 6.38255 6.81526 7.03850 7.28605 7.44647 8.92202 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.005435 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.763150 B = 5150.639536 C = 5635.107123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.164 3.836 3 N -0.406 5.406 4 O 0.077 5.923 5 C 0.185 3.815 6 C 0.225 3.775 7 H 0.134 0.866 8 C -0.156 4.156 9 N -0.619 5.619 10 C 0.081 3.919 11 C 0.526 3.474 12 O -0.571 6.571 13 C 0.027 3.973 14 H 0.053 0.947 15 C -0.116 4.116 16 C -0.530 4.530 17 H 0.048 0.952 18 C 0.025 3.975 19 N -0.907 5.907 20 Si 0.954 3.046 21 H -0.281 1.281 22 H -0.275 1.275 23 H -0.272 1.272 24 N -0.492 5.492 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.017 0.983 36 H 0.036 0.964 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 9.855 -10.124 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.117 5.117 4 O 0.022 5.978 5 C -0.037 4.037 6 C 0.119 3.881 7 H 0.152 0.848 8 C -0.215 4.215 9 N -0.354 5.354 10 C -0.060 4.060 11 C 0.318 3.682 12 O -0.448 6.448 13 C 0.006 3.994 14 H 0.071 0.929 15 C -0.174 4.174 16 C -0.568 4.568 17 H 0.066 0.934 18 C -0.175 4.175 19 N -0.546 5.546 20 Si 0.780 3.220 21 H -0.206 1.206 22 H -0.200 1.200 23 H -0.198 1.198 24 N -0.227 5.227 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.884 10.455 -9.679 16.790 hybrid contribution 0.801 -0.543 0.858 1.293 sum -8.082 9.912 -8.821 15.536 Atomic orbital electron populations 1.20382 0.80002 1.05732 1.05882 1.26730 1.02284 0.82718 0.99071 1.74581 0.89666 1.24593 1.22826 1.85285 1.22388 1.24496 1.65673 1.29303 0.97186 0.82304 0.94940 1.19949 0.79698 0.95574 0.92875 0.84826 1.22247 1.02618 1.05025 0.91602 1.48128 1.45106 1.10873 1.31287 1.21768 1.01278 0.79494 1.03505 1.21748 0.77344 0.90396 0.78761 1.90525 1.39288 1.77152 1.37858 1.18858 0.95747 0.85969 0.98815 0.92888 1.21580 0.94896 1.02986 0.97951 1.21157 1.11376 0.92304 1.31985 0.93396 1.25539 0.97626 0.97796 0.96542 1.69932 1.32606 1.07840 1.44233 0.85677 0.79767 0.77486 0.79109 1.20632 1.20010 1.19768 1.71959 0.99844 1.30195 1.20696 0.87200 0.88194 0.88225 0.89458 0.88785 0.89655 0.93550 0.91235 0.87840 0.90453 0.96327 0.94486 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.51 71.24 0.75 -0.24 16 2 C 0.16 4.28 8.22 138.47 1.14 5.42 16 3 N -0.41 -11.42 12.16 -60.35 -0.73 -12.16 16 4 O 0.08 2.15 9.49 74.83 0.71 2.86 16 5 C 0.18 5.34 7.16 88.38 0.63 5.97 16 6 C 0.23 6.54 2.38 44.25 0.11 6.64 16 7 H 0.13 4.40 4.52 -2.39 -0.01 4.39 16 8 C -0.16 -3.28 9.26 71.98 0.67 -2.61 16 9 N -0.62 -21.24 2.75 -826.80 -2.28 -23.52 16 10 C 0.08 2.30 8.68 127.77 1.11 3.41 16 11 C 0.53 23.84 6.84 87.66 0.60 24.44 16 12 O -0.57 -29.92 15.36 -3.02 -0.05 -29.97 16 13 C 0.03 1.33 1.77 -12.28 -0.02 1.31 16 14 H 0.05 2.54 7.04 -2.38 -0.02 2.53 16 15 C -0.12 -5.46 8.43 71.98 0.61 -4.86 16 16 C -0.53 -29.85 8.34 25.60 0.21 -29.64 16 17 H 0.05 2.88 6.92 -2.91 -0.02 2.86 16 18 C 0.02 1.36 5.30 84.65 0.45 1.81 16 19 N -0.91 -49.49 11.40 21.45 0.24 -49.24 16 20 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 N -0.49 -14.67 11.55 -303.22 -3.50 -18.18 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.46 6.96 -2.39 -0.02 1.44 16 31 H 0.05 1.34 7.96 -2.39 -0.02 1.32 16 32 H 0.07 2.10 7.61 -2.39 -0.02 2.08 16 33 H 0.10 2.15 6.48 -2.38 -0.02 2.13 16 34 H 0.08 3.89 6.28 -2.39 -0.02 3.88 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.04 1.52 6.53 -2.39 -0.02 1.50 16 37 H 0.27 13.80 8.31 -92.72 -0.77 13.03 16 Total: -1.00 -68.08 307.91 3.75 -64.33 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.09 Total: 8.30 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 6.25 Total: 11.65 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -6.27 Total: -103.09 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: 0.66 Total: -27.11 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.08 3.75 -64.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597827475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.332 kcal (2) G-P(sol) polarization free energy of solvation -68.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds