Wall clock time and date at job start Mon Mar 30 2020 04:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00122 * 2 1 4 4 H 1.09006 * 110.01701 * 29.29346 * 3 2 1 5 5 C 1.54273 * 110.03088 * 267.90321 * 3 2 1 6 6 C 1.54965 * 104.15981 * 217.13343 * 5 3 2 7 7 C 1.54894 * 102.77657 * 37.88860 * 6 5 3 8 8 C 1.53875 * 110.03681 * 150.68568 * 3 2 1 9 9 H 1.08993 * 110.03170 * 238.56658 * 8 3 2 10 10 N 1.46503 * 110.03141 * 0.02562 * 8 3 2 11 11 C 1.36932 * 120.00082 * 59.99901 * 10 8 3 12 12 H 1.07999 * 119.99980 * 327.73348 * 11 10 8 13 13 C 1.38807 * 120.00444 * 147.73767 * 11 10 8 14 14 N 1.31631 * 119.99618 * 336.14370 * 13 11 10 15 15 Si 1.86800 * 120.00649 * 156.14064 * 13 11 10 16 16 H 1.48498 * 109.47028 * 59.99989 * 15 13 11 17 17 H 1.48500 * 109.47290 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46900 * 300.00230 * 15 13 11 19 19 C 1.46500 * 119.99727 * 240.00176 * 10 8 3 20 20 C 1.52995 * 109.47395 * 85.97707 * 19 10 8 21 21 F 1.39895 * 109.47731 * 59.99499 * 20 19 10 22 22 F 1.39902 * 109.47201 * 179.97438 * 20 19 10 23 23 F 1.39905 * 109.46919 * 299.99493 * 20 19 10 24 24 H 1.08995 * 109.47617 * 300.00568 * 1 2 3 25 25 H 1.08998 * 109.46583 * 60.00642 * 1 2 3 26 26 H 1.08999 * 109.46752 * 180.02562 * 1 2 3 27 27 H 1.08994 * 110.48372 * 335.78611 * 5 3 2 28 28 H 1.09008 * 110.48341 * 98.42747 * 5 3 2 29 29 H 1.08995 * 110.72072 * 279.57257 * 6 5 3 30 30 H 1.08997 * 110.92074 * 156.29383 * 6 5 3 31 31 H 1.08994 * 110.48165 * 203.40319 * 7 6 5 32 32 H 1.09002 * 110.48288 * 80.76115 * 7 6 5 33 33 H 0.96993 * 119.99346 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.46871 * 205.97617 * 19 10 8 35 35 H 1.09004 * 109.47081 * 325.96932 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3460 2.0096 0.5011 5 6 2.2736 1.7666 -1.4484 6 6 3.6105 2.5454 -1.3611 7 6 4.4231 1.7171 -0.3352 8 6 3.3762 1.2743 0.7078 9 1 3.3751 1.9640 1.5518 10 7 3.6716 -0.0845 1.1689 11 6 3.7524 -1.1113 0.2667 12 1 3.1386 -1.0990 -0.6218 13 6 4.6231 -2.1682 0.4940 14 7 5.6750 -1.9996 1.2671 15 14 4.3022 -3.8297 -0.2971 16 1 4.2960 -3.6815 -1.7746 17 1 5.3698 -4.7820 0.1010 18 1 2.9851 -4.3466 0.1541 19 6 3.8805 -0.3446 2.5954 20 6 2.5304 -0.5888 3.2725 21 9 1.9063 -1.6937 2.6835 22 9 2.7300 -0.8378 4.6346 23 9 1.7203 0.5414 3.1184 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 2.3758 0.9064 -2.1100 28 1 1.4720 2.4204 -1.7923 29 1 3.4435 3.5582 -0.9944 30 1 4.1138 2.5642 -2.3278 31 1 5.1897 2.3350 0.1324 32 1 4.8729 0.8487 -0.8166 33 1 6.2836 -2.7380 1.4256 34 1 4.5117 -1.2251 2.7155 35 1 4.3668 0.5163 3.0544 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686013865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:42 Heat of formation + Delta-G solvation = -193.351008 kcal Electronic energy + Delta-G solvation = -23057.251480 eV Core-core repulsion = 19254.473637 eV Total energy + Delta-G solvation = -3802.777843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.64141 -48.22145 -48.09514 -40.06877 -37.22670 -35.88060 -33.08017 -30.14118 -28.89411 -28.19055 -26.81532 -25.23246 -23.25041 -21.48806 -20.83015 -19.32111 -19.07804 -18.74478 -17.82976 -17.24511 -16.51659 -16.25364 -15.76760 -15.43983 -15.30008 -15.03975 -14.92183 -14.72905 -14.63663 -14.40528 -14.35747 -14.31726 -13.43915 -13.31003 -13.04047 -12.78064 -12.63618 -12.31565 -12.22682 -12.02061 -11.91582 -11.74627 -11.61597 -11.40184 -11.22136 -10.46098 -10.13256 -8.63523 -7.83833 -5.30050 1.47315 1.52589 1.58942 2.24664 2.55311 3.07589 3.21564 3.47897 3.56367 3.59567 3.89985 3.97746 4.00312 4.33117 4.47086 4.59510 4.61276 4.65161 4.68768 4.85363 4.90860 4.95589 4.99437 5.18260 5.27244 5.29986 5.34922 5.51683 5.72882 5.96358 6.46651 6.73596 7.16521 7.83261 8.32191 9.18717 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.012269 C = 0.009204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.606791 B = 2281.667049 C = 3041.527479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.070 3.930 4 H 0.061 0.939 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.125 4.125 8 C 0.156 3.844 9 H 0.071 0.929 10 N -0.554 5.554 11 C -0.202 4.202 12 H 0.072 0.928 13 C -0.043 4.043 14 N -0.921 5.921 15 Si 0.940 3.060 16 H -0.278 1.278 17 H -0.296 1.296 18 H -0.291 1.291 19 C 0.104 3.896 20 C 0.417 3.583 21 F -0.194 7.194 22 F -0.207 7.207 23 F -0.196 7.196 24 H 0.032 0.968 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.251 0.749 34 H 0.114 0.886 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 8.616 -1.083 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.281 6.281 3 C 0.010 3.990 4 H 0.079 0.921 5 C -0.174 4.174 6 C -0.147 4.147 7 C -0.164 4.164 8 C 0.050 3.950 9 H 0.089 0.911 10 N -0.269 5.269 11 C -0.332 4.332 12 H 0.089 0.911 13 C -0.238 4.238 14 N -0.567 5.567 15 Si 0.770 3.230 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.218 1.218 19 C -0.028 4.028 20 C 0.359 3.641 21 F -0.176 7.176 22 F -0.189 7.189 23 F -0.178 7.178 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.132 0.868 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.306 8.337 -1.085 10.509 hybrid contribution -0.579 -1.140 0.050 1.280 sum -6.885 7.196 -1.034 10.013 Atomic orbital electron populations 1.22763 0.82922 1.01919 0.99428 1.88405 1.18137 1.26907 1.94693 1.23334 0.95212 0.84577 0.95828 0.92103 1.22797 0.98380 0.99730 0.96467 1.22328 0.94840 0.98457 0.99062 1.22629 0.97682 0.99057 0.97045 1.21590 0.92405 0.85510 0.95512 0.91055 1.43653 1.79388 1.04031 0.99873 1.19129 1.13532 0.97513 1.03062 0.91073 1.25500 0.95088 1.02041 1.01210 1.69990 1.12242 1.31201 1.43270 0.85748 0.76575 0.82024 0.78643 1.20366 1.22218 1.21819 1.22236 0.88994 1.05823 0.85719 1.23170 0.92112 0.73215 0.75596 1.93094 1.85143 1.55216 1.84119 1.93061 1.95334 1.94457 1.36060 1.93035 1.76970 1.52405 1.95410 0.94939 0.93329 0.90935 0.92634 0.90284 0.89833 0.91086 0.92090 0.92924 0.93988 0.86849 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.85 113.37 1.23 2.07 16 2 O -0.36 -14.37 6.92 -148.98 -1.03 -15.40 16 3 C 0.07 2.40 3.23 31.32 0.10 2.50 16 4 H 0.06 1.88 7.81 -2.38 -0.02 1.86 16 5 C -0.14 -3.96 6.56 31.70 0.21 -3.75 16 6 C -0.11 -2.94 6.91 31.91 0.22 -2.72 16 7 C -0.13 -4.40 6.41 31.67 0.20 -4.20 16 8 C 0.16 5.90 2.82 45.72 0.13 6.03 16 9 H 0.07 2.51 7.88 -2.39 -0.02 2.49 16 10 N -0.55 -25.29 1.99 -674.03 -1.34 -26.64 16 11 C -0.20 -10.35 6.70 84.03 0.56 -9.79 16 12 H 0.07 3.80 6.40 -2.91 -0.02 3.78 16 13 C -0.04 -2.32 4.91 84.86 0.42 -1.90 16 14 N -0.92 -51.00 11.31 21.65 0.24 -50.75 16 15 Si 0.94 45.12 29.62 68.60 2.03 47.15 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 18 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 19 C 0.10 4.66 5.24 86.38 0.45 5.12 16 20 C 0.42 17.78 3.29 71.98 0.24 18.02 16 21 F -0.19 -9.23 16.97 44.97 0.76 -8.46 16 22 F -0.21 -8.37 17.32 44.97 0.78 -7.59 16 23 F -0.20 -7.82 16.66 44.97 0.75 -7.07 16 24 H 0.03 0.98 8.10 -2.39 -0.02 0.96 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 28 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 2.27 7.00 -2.39 -0.02 2.25 16 33 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 34 H 0.11 5.83 5.26 -2.38 -0.01 5.82 16 35 H 0.08 3.32 8.01 -2.39 -0.02 3.30 16 Total: -1.00 -57.64 294.73 7.05 -50.59 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.09 Total: 6.79 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 3.76 Total: 11.37 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -1.10 Total: -77.39 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.03 Total: -15.40 kcal Atomic # 9 Polarization: -25.41 SS G_CDS: 2.29 Total: -23.12 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -57.64 7.05 -50.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686013865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.760 kcal (2) G-P(sol) polarization free energy of solvation -57.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds