Wall clock time and date at job start Mon Mar 30 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47563 * 305.00337 * 12 11 10 14 14 N 1.46910 * 109.47127 * 65.00091 * 12 11 10 15 15 C 1.50700 * 109.47798 * 185.00026 * 12 11 10 16 16 O 1.21283 * 120.00117 * 260.00788 * 15 12 11 17 17 N 1.34772 * 119.99971 * 79.99728 * 15 12 11 18 18 C 1.46496 * 120.00222 * 180.02562 * 17 15 12 19 19 C 1.50701 * 109.47582 * 180.02562 * 18 17 15 20 20 C 1.35450 * 126.77590 * 89.99654 * 19 18 17 21 21 C 1.41377 * 103.98489 * 179.97438 * 20 19 18 22 22 N 1.30174 * 106.39890 * 359.97438 * 21 20 19 23 23 O 1.20928 * 111.60189 * 359.72268 * 22 21 20 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 1.00894 * 110.99558 * 296.04896 * 14 12 11 32 32 H 1.00892 * 110.99957 * 60.00190 * 14 12 11 33 33 H 0.97003 * 120.00400 * 0.02562 * 17 15 12 34 34 H 1.09009 * 109.47041 * 299.99863 * 18 17 15 35 35 H 1.09005 * 109.47453 * 60.00054 * 18 17 15 36 36 H 1.07998 * 128.00948 * 359.97438 * 20 19 18 37 37 H 1.08003 * 126.80461 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 1 3.1588 -6.0435 -0.8394 14 7 3.2378 -6.1413 1.2577 15 6 1.7253 -7.4517 -0.1209 16 8 1.5130 -8.1249 0.8653 17 7 1.2910 -7.8676 -1.3271 18 6 0.5621 -9.1327 -1.4469 19 6 0.1921 -9.3647 -2.8892 20 6 0.9297 -10.0144 -3.8212 21 6 0.1366 -9.9506 -4.9898 22 7 -0.9450 -9.3033 -4.6651 23 8 -0.9348 -8.9749 -3.5013 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8714 -3.6047 -0.8890 28 1 2.8726 -3.6039 0.8910 29 1 0.8541 -5.0447 0.8922 30 1 0.8534 -5.0451 -0.8877 31 1 3.7994 -5.3066 1.3335 32 1 2.6256 -6.2389 2.0537 33 1 1.4610 -7.3292 -2.1159 34 1 1.1933 -9.9501 -1.0981 35 1 -0.3434 -9.0891 -0.8417 36 1 1.8992 -10.4745 -3.6998 37 1 0.3799 -10.3583 -5.9600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691559906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:54 Heat of formation + Delta-G solvation = 8.363543 kcal Electronic energy + Delta-G solvation = -19442.911109 eV Core-core repulsion = 16223.029756 eV Total energy + Delta-G solvation = -3219.881353 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.31430 -39.94527 -36.28691 -35.46046 -34.16962 -33.38293 -32.16042 -31.26939 -28.33545 -27.08447 -24.90992 -23.87688 -22.55964 -21.73891 -20.40904 -20.17363 -18.11912 -17.94834 -17.14911 -16.35458 -16.21145 -15.48672 -15.26466 -14.85823 -14.53534 -14.51540 -14.02671 -13.75633 -13.52322 -13.25226 -12.72394 -12.48601 -12.07864 -11.86170 -11.71030 -11.25236 -10.85634 -10.84982 -10.76465 -10.57671 -10.20892 -9.82248 -9.73115 -9.41441 -9.37122 -9.14853 -8.53371 -8.39634 -6.04437 -4.07548 0.93665 1.87042 2.56125 2.61161 3.11323 3.28000 3.35791 3.39342 3.97311 4.07330 4.41750 4.63000 4.64802 4.78822 4.83411 5.04899 5.17074 5.26547 5.26932 5.31235 5.31547 5.60378 5.72557 5.92367 6.07468 6.22396 6.53974 6.70432 6.99452 7.07648 7.32700 7.55841 7.61157 7.73455 7.84817 7.94569 8.10700 8.36275 8.99878 9.57192 11.06761 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.003381 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.010179 B = 8278.375627 C = 9207.289821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.148 4.148 12 C 0.077 3.923 13 H 0.101 0.899 14 N -0.830 5.830 15 C 0.529 3.471 16 O -0.530 6.530 17 N -0.733 5.733 18 C 0.204 3.796 19 C -0.049 4.049 20 C -0.211 4.211 21 C -0.014 4.014 22 N -0.358 5.358 23 O 0.109 5.891 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.353 0.647 32 H 0.350 0.650 33 H 0.406 0.594 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.176 0.824 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 -20.141 -6.630 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.188 4.188 12 C -0.038 4.038 13 H 0.119 0.881 14 N -0.363 5.363 15 C 0.316 3.684 16 O -0.405 6.405 17 N -0.388 5.388 18 C 0.079 3.921 19 C -0.113 4.113 20 C -0.233 4.233 21 C -0.192 4.192 22 N -0.058 5.058 23 O 0.040 5.960 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.240 0.760 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.193 0.807 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.193 -20.822 -6.856 22.031 hybrid contribution 0.654 1.707 -0.224 1.841 sum 2.847 -19.115 -7.080 20.582 Atomic orbital electron populations 1.69970 1.06084 1.26568 1.50753 1.25038 0.94845 0.99334 0.95272 0.86544 0.80106 0.83786 0.77618 1.19712 1.20998 1.20994 1.21280 0.93041 0.91060 1.50691 0.92624 1.19087 0.93937 0.91296 0.97260 1.21652 0.99140 0.93466 1.00378 1.22424 0.98319 0.95072 1.02948 1.21427 0.95533 0.90972 0.95889 0.88148 1.58696 1.28183 1.46157 1.03232 1.20782 0.78275 0.87231 0.82126 1.90680 1.56320 1.56643 1.36838 1.46010 1.58958 1.23121 1.10722 1.19559 0.98216 0.88281 0.86025 1.24478 0.88157 1.01036 0.97657 1.22714 1.03177 1.05373 0.92011 1.25136 0.91213 1.01038 1.01826 1.73957 1.22463 1.14783 0.94637 1.84894 1.35761 1.58623 1.16705 0.93004 0.96609 0.96666 0.93039 0.93285 0.91619 0.91497 0.83202 0.83665 0.75955 0.87926 0.88919 0.80673 0.78982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.02 4.92 -26.73 -0.13 -2.15 16 11 C -0.15 -2.26 4.84 -26.74 -0.13 -2.39 16 12 C 0.08 0.99 3.21 -68.86 -0.22 0.77 16 13 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 14 N -0.83 -10.96 8.94 -5.65 -0.05 -11.01 16 15 C 0.53 6.85 7.08 -10.99 -0.08 6.78 16 16 O -0.53 -8.52 16.25 5.55 0.09 -8.43 16 17 N -0.73 -7.15 5.55 -61.47 -0.34 -7.49 16 18 C 0.20 1.71 6.23 -5.19 -0.03 1.68 16 19 C -0.05 -0.41 6.86 -35.30 -0.24 -0.65 16 20 C -0.21 -1.46 11.09 -39.38 -0.44 -1.90 16 21 C -0.01 -0.11 12.17 -17.06 -0.21 -0.32 16 22 N -0.36 -3.94 12.07 30.36 0.37 -3.57 16 23 O 0.11 1.17 11.20 17.17 0.19 1.37 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.88 6.87 -51.93 -0.36 0.52 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.35 4.39 7.55 -39.29 -0.30 4.09 16 32 H 0.35 4.79 8.58 -39.30 -0.34 4.46 16 33 H 0.41 3.37 8.46 -40.82 -0.35 3.02 16 34 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.19 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -33.14 322.86 -6.29 -39.44 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.11 Total: 5.49 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.03 Total: -11.06 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.71 Total: -48.02 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.28 Total: -7.06 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.14 -6.29 -39.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691559906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.803 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds