Wall clock time and date at job start Mon Mar 30 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47563 * 305.00337 * 12 11 10 14 14 N 1.46910 * 109.47127 * 65.00091 * 12 11 10 15 15 C 1.50700 * 109.47798 * 185.00026 * 12 11 10 16 16 O 1.21283 * 120.00117 * 260.00788 * 15 12 11 17 17 N 1.34772 * 119.99971 * 79.99728 * 15 12 11 18 18 C 1.46496 * 120.00222 * 180.02562 * 17 15 12 19 19 C 1.50701 * 109.47582 * 180.02562 * 18 17 15 20 20 C 1.35450 * 126.77590 * 89.99654 * 19 18 17 21 21 C 1.41377 * 103.98489 * 179.97438 * 20 19 18 22 22 N 1.30174 * 106.39890 * 359.97438 * 21 20 19 23 23 O 1.20928 * 111.60189 * 359.72268 * 22 21 20 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 1.00894 * 110.99558 * 296.04896 * 14 12 11 32 32 H 1.00892 * 110.99957 * 60.00190 * 14 12 11 33 33 H 0.97003 * 120.00400 * 0.02562 * 17 15 12 34 34 H 1.09009 * 109.47041 * 299.99863 * 18 17 15 35 35 H 1.09005 * 109.47453 * 60.00054 * 18 17 15 36 36 H 1.07998 * 128.00948 * 359.97438 * 20 19 18 37 37 H 1.08003 * 126.80461 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 1 3.1588 -6.0435 -0.8394 14 7 3.2378 -6.1413 1.2577 15 6 1.7253 -7.4517 -0.1209 16 8 1.5130 -8.1249 0.8653 17 7 1.2910 -7.8676 -1.3271 18 6 0.5621 -9.1327 -1.4469 19 6 0.1921 -9.3647 -2.8892 20 6 0.9297 -10.0144 -3.8212 21 6 0.1366 -9.9506 -4.9898 22 7 -0.9450 -9.3033 -4.6651 23 8 -0.9348 -8.9749 -3.5013 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8714 -3.6047 -0.8890 28 1 2.8726 -3.6039 0.8910 29 1 0.8541 -5.0447 0.8922 30 1 0.8534 -5.0451 -0.8877 31 1 3.7994 -5.3066 1.3335 32 1 2.6256 -6.2389 2.0537 33 1 1.4610 -7.3292 -2.1159 34 1 1.1933 -9.9501 -1.0981 35 1 -0.3434 -9.0891 -0.8417 36 1 1.8992 -10.4745 -3.6998 37 1 0.3799 -10.3583 -5.9600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691559906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:53 Heat of formation + Delta-G solvation = -16.665654 kcal Electronic energy + Delta-G solvation = -19443.996456 eV Core-core repulsion = 16223.029756 eV Total energy + Delta-G solvation = -3220.966700 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.97451 -40.96736 -37.51227 -36.40756 -35.25812 -34.81874 -33.01755 -32.87101 -29.58782 -28.30909 -26.32224 -24.49930 -24.10900 -22.41962 -21.87691 -21.27519 -18.96375 -18.67599 -18.46044 -18.04217 -17.06601 -16.54593 -16.34528 -16.14999 -16.01517 -15.54496 -15.09059 -14.64538 -14.45879 -14.24641 -14.20868 -13.66031 -13.62111 -13.35867 -12.92572 -12.56595 -12.39573 -12.37932 -12.33827 -11.49207 -11.48736 -11.44101 -11.27586 -10.96783 -10.56618 -10.48798 -10.23854 -9.64870 -8.20325 -6.31594 0.27981 1.28921 1.40250 1.40884 1.53708 1.56633 1.90793 2.30392 2.41024 3.13349 3.41208 3.48310 3.68946 3.74835 4.00603 4.04894 4.11374 4.18081 4.40666 4.47124 4.58414 4.65389 4.73668 4.78110 5.03061 5.10410 5.19751 5.24262 5.25952 5.52968 5.73998 5.85911 6.06827 6.24030 6.42488 6.51974 6.87091 7.14810 7.20338 7.38423 8.91506 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.003381 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.010179 B = 8278.375627 C = 9207.289821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.022 3.978 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.085 3.915 13 H 0.124 0.876 14 N -0.831 5.831 15 C 0.530 3.470 16 O -0.564 6.564 17 N -0.719 5.719 18 C 0.206 3.794 19 C -0.056 4.056 20 C -0.196 4.196 21 C -0.009 4.009 22 N -0.395 5.395 23 O 0.081 5.919 24 H 0.262 0.738 25 H -0.010 1.010 26 H -0.015 1.015 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.357 0.643 32 H 0.346 0.654 33 H 0.415 0.585 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.206 0.794 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -20.826 -7.585 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.177 4.177 12 C -0.030 4.030 13 H 0.142 0.858 14 N -0.363 5.363 15 C 0.317 3.683 16 O -0.442 6.442 17 N -0.374 5.374 18 C 0.082 3.918 19 C -0.120 4.120 20 C -0.217 4.217 21 C -0.187 4.187 22 N -0.100 5.100 23 O 0.016 5.984 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.003 0.997 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.251 0.749 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.223 0.777 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.356 -21.509 -7.820 23.297 hybrid contribution -0.032 1.868 0.027 1.869 sum 4.324 -19.640 -7.793 21.568 Atomic orbital electron populations 1.70109 1.07905 1.27644 1.51949 1.26009 0.95725 1.03498 0.94870 0.85410 0.79271 0.78824 0.77617 1.18216 1.20536 1.20681 1.21774 0.93709 0.92306 1.50062 0.91757 1.19021 0.94545 0.93420 0.94543 1.21431 0.97897 0.92535 1.01367 1.22249 0.98429 0.94607 1.02375 1.21375 0.95110 0.89842 0.96652 0.85790 1.58722 1.28058 1.46327 1.03223 1.20724 0.78132 0.87036 0.82449 1.90671 1.57761 1.57662 1.38100 1.45907 1.57823 1.23548 1.10109 1.19615 0.98051 0.87943 0.86200 1.24537 0.88081 1.01692 0.97718 1.23096 1.03743 1.04015 0.90859 1.25740 0.90227 0.99464 1.03284 1.73964 1.24353 1.16699 0.94980 1.84856 1.36952 1.59654 1.16968 0.92888 0.99150 0.99677 0.91778 0.92434 0.93210 0.91221 0.82732 0.84094 0.74910 0.86362 0.89682 0.77716 0.76142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.09 -3.44 4.92 30.59 0.15 -3.29 16 11 C -0.14 -4.08 4.84 30.59 0.15 -3.94 16 12 C 0.09 2.04 3.21 44.16 0.14 2.19 16 13 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 14 N -0.83 -20.69 8.94 -171.79 -1.54 -22.23 16 15 C 0.53 13.00 7.08 87.66 0.62 13.62 16 16 O -0.56 -17.69 16.25 -3.04 -0.05 -17.74 16 17 N -0.72 -12.87 5.55 -466.78 -2.59 -15.46 16 18 C 0.21 3.18 6.23 85.63 0.53 3.72 16 19 C -0.06 -0.86 6.86 25.04 0.17 -0.69 16 20 C -0.20 -2.19 11.09 22.40 0.25 -1.94 16 21 C -0.01 -0.13 12.17 85.71 1.04 0.91 16 22 N -0.40 -8.45 12.07 -59.26 -0.72 -9.17 16 23 O 0.08 1.72 11.20 71.63 0.80 2.52 16 24 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 25 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 26 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 1.99 6.87 -2.39 -0.02 1.97 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.36 8.24 7.55 -89.70 -0.68 7.56 16 32 H 0.35 9.23 8.58 -89.70 -0.77 8.46 16 33 H 0.41 6.04 8.46 -92.71 -0.78 5.26 16 34 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 37 H 0.22 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -72.49 322.86 1.00 -71.48 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -1.12 Total: 19.11 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 3.90 Total: -17.62 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -4.56 Total: -103.45 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.75 Total: -15.21 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -72.49 1.00 -71.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691559906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.817 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds