Wall clock time and date at job start Mon Mar 30 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46739 * 55.00050 * 12 11 10 14 14 N 1.46895 * 109.47375 * 295.00374 * 12 11 10 15 15 C 1.50703 * 109.47152 * 175.00085 * 12 11 10 16 16 O 1.21276 * 119.99979 * 100.00242 * 15 12 11 17 17 N 1.34779 * 120.00055 * 279.99928 * 15 12 11 18 18 C 1.46495 * 119.99997 * 180.02562 * 17 15 12 19 19 C 1.50699 * 109.47134 * 180.02562 * 18 17 15 20 20 C 1.41373 * 126.80323 * 94.99894 * 19 18 17 21 21 C 1.35452 * 103.99074 * 180.02562 * 20 19 18 22 22 O 1.34049 * 106.44247 * 0.02562 * 21 20 19 23 23 N 1.20924 * 111.56228 * 359.71264 * 22 21 20 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.00905 * 111.00436 * 176.04302 * 14 12 11 32 32 H 1.00905 * 110.99912 * 299.99773 * 14 12 11 33 33 H 0.97000 * 119.99464 * 0.02562 * 17 15 12 34 34 H 1.08997 * 109.47210 * 300.00124 * 18 17 15 35 35 H 1.09001 * 109.47390 * 60.00175 * 18 17 15 36 36 H 1.08003 * 128.00832 * 0.03888 * 20 19 18 37 37 H 1.07990 * 126.78414 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0434 0.8401 14 7 3.2378 -6.1411 -1.2570 15 6 1.7254 -7.4517 0.1214 16 8 1.5131 -8.1248 -0.8648 17 7 1.2911 -7.8677 1.3275 18 6 0.5632 -9.1334 1.4473 19 6 0.1921 -9.3649 2.8895 20 6 -1.0337 -9.0353 3.5119 21 6 -0.8691 -9.4398 4.7941 22 8 0.3651 -9.9571 4.8732 23 7 0.9352 -9.9116 3.8078 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 0.8535 -5.0450 0.8885 30 1 0.8542 -5.0446 -0.8914 31 1 3.9456 -6.8603 -1.2550 32 1 2.6255 -6.2385 -2.0531 33 1 1.4607 -7.3291 2.1162 34 1 -0.3422 -9.0905 0.8419 35 1 1.1950 -9.9504 1.0988 36 1 -1.9009 -8.5691 3.0679 37 1 -1.5893 -9.3604 5.5948 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691563716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:11 Heat of formation + Delta-G solvation = 6.300254 kcal Electronic energy + Delta-G solvation = -19409.344073 eV Core-core repulsion = 16189.373250 eV Total energy + Delta-G solvation = -3219.970824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.37796 -40.03054 -36.26534 -35.56639 -33.63076 -33.33571 -32.05719 -31.35257 -28.59780 -27.36506 -24.79321 -23.55699 -22.46288 -21.50124 -20.30876 -20.01397 -18.34953 -17.97598 -17.18102 -16.52747 -16.27143 -15.74151 -15.41697 -14.98962 -14.44372 -14.30401 -13.93214 -13.82995 -13.29004 -12.95200 -12.89828 -12.38956 -11.78643 -11.77724 -11.48469 -11.15896 -10.88014 -10.75800 -10.57220 -10.42188 -10.22981 -10.07289 -9.61385 -9.36409 -9.22427 -9.03060 -8.58925 -8.30038 -5.95634 -3.97084 1.07017 1.66427 2.50373 2.84365 3.15867 3.33953 3.41394 3.46286 3.66107 4.11081 4.49519 4.56554 4.71320 4.78526 4.92589 5.00164 5.16389 5.28738 5.35809 5.39817 5.40614 5.56929 5.92112 6.09224 6.12333 6.43435 6.81779 7.00667 7.06315 7.24216 7.30928 7.50853 7.74944 7.81159 7.90070 8.02944 8.06083 8.49625 9.10835 9.66811 11.15873 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.003357 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.781873 B = 8339.158475 C = 9253.067809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.103 4.103 12 C 0.079 3.921 13 H 0.101 0.899 14 N -0.810 5.810 15 C 0.486 3.514 16 O -0.548 6.548 17 N -0.725 5.725 18 C 0.200 3.800 19 C -0.005 4.005 20 C -0.219 4.219 21 C -0.057 4.057 22 O 0.107 5.893 23 N -0.349 5.349 24 H 0.259 0.741 25 H 0.014 0.986 26 H 0.012 0.988 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.338 0.662 32 H 0.350 0.650 33 H 0.405 0.595 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.176 0.824 37 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -20.213 8.558 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.142 4.142 12 C -0.037 4.037 13 H 0.119 0.881 14 N -0.339 5.339 15 C 0.271 3.729 16 O -0.425 6.425 17 N -0.379 5.379 18 C 0.075 3.925 19 C -0.164 4.164 20 C -0.241 4.241 21 C -0.138 4.138 22 O 0.037 5.963 23 N -0.051 5.051 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.240 0.760 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.194 0.806 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.642 -20.355 8.015 21.886 hybrid contribution -0.928 0.536 0.199 1.090 sum -1.570 -19.819 8.214 21.511 Atomic orbital electron populations 1.69974 1.06056 1.26352 1.51379 1.25031 0.94831 0.99239 0.95498 0.86561 0.80207 0.83897 0.77492 1.19700 1.21075 1.21117 1.21326 0.93138 0.91094 1.49845 0.92590 1.19127 0.94110 0.91657 0.96918 1.21544 0.98783 0.92260 1.01211 1.21656 0.96517 0.94009 1.01977 1.21775 0.95862 0.90601 0.95439 0.88112 1.59043 1.17314 1.54266 1.03253 1.22636 0.78958 0.88982 0.82302 1.90678 1.57479 1.57428 1.36929 1.46131 1.58240 1.22848 1.10726 1.19427 0.98028 0.87716 0.87333 1.23623 0.92662 1.02094 0.98024 1.22844 1.00345 1.06833 0.94107 1.26107 0.88418 0.99396 0.99911 1.84869 1.23755 1.60012 1.27689 1.73914 1.20814 1.18030 0.92322 0.93177 0.96750 0.96989 0.91781 0.93669 0.91934 0.91843 0.84947 0.83522 0.76035 0.89077 0.89856 0.80637 0.76339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.10 -2.04 5.04 -26.73 -0.13 -2.17 16 11 C -0.10 -1.69 4.84 -26.73 -0.13 -1.82 16 12 C 0.08 1.08 3.15 -68.87 -0.22 0.86 16 13 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 14 N -0.81 -11.11 8.44 -5.65 -0.05 -11.15 16 15 C 0.49 6.56 7.07 -10.98 -0.08 6.48 16 16 O -0.55 -8.94 16.25 5.56 0.09 -8.85 16 17 N -0.73 -8.03 5.55 -61.48 -0.34 -8.37 16 18 C 0.20 2.05 6.26 -5.20 -0.03 2.01 16 19 C -0.01 -0.05 6.70 -82.10 -0.55 -0.60 16 20 C -0.22 -1.57 11.12 -39.38 -0.44 -2.01 16 21 C -0.06 -0.33 12.30 29.74 0.37 0.04 16 22 O 0.11 0.93 11.20 17.15 0.19 1.12 16 23 N -0.35 -3.74 12.07 33.42 0.40 -3.34 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.34 4.04 9.06 -39.29 -0.36 3.69 16 32 H 0.35 4.96 8.58 -39.29 -0.34 4.62 16 33 H 0.41 3.98 8.46 -40.82 -0.35 3.63 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.22 0.28 8.06 -52.49 -0.42 -0.14 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -34.08 324.83 -6.07 -40.14 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.21 Total: 5.62 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.76 Total: -10.44 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.75 Total: -49.32 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.28 Total: -7.73 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.08 -6.07 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691563716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.445 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds