Wall clock time and date at job start Mon Mar 30 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46739 * 55.00050 * 12 11 10 14 14 N 1.46895 * 109.47375 * 295.00374 * 12 11 10 15 15 C 1.50703 * 109.47152 * 175.00085 * 12 11 10 16 16 O 1.21276 * 119.99979 * 100.00242 * 15 12 11 17 17 N 1.34779 * 120.00055 * 279.99928 * 15 12 11 18 18 C 1.46495 * 119.99997 * 180.02562 * 17 15 12 19 19 C 1.50699 * 109.47134 * 180.02562 * 18 17 15 20 20 C 1.41373 * 126.80323 * 94.99894 * 19 18 17 21 21 C 1.35452 * 103.99074 * 180.02562 * 20 19 18 22 22 O 1.34049 * 106.44247 * 0.02562 * 21 20 19 23 23 N 1.20924 * 111.56228 * 359.71264 * 22 21 20 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.00905 * 111.00436 * 176.04302 * 14 12 11 32 32 H 1.00905 * 110.99912 * 299.99773 * 14 12 11 33 33 H 0.97000 * 119.99464 * 0.02562 * 17 15 12 34 34 H 1.08997 * 109.47210 * 300.00124 * 18 17 15 35 35 H 1.09001 * 109.47390 * 60.00175 * 18 17 15 36 36 H 1.08003 * 128.00832 * 0.03888 * 20 19 18 37 37 H 1.07990 * 126.78414 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0434 0.8401 14 7 3.2378 -6.1411 -1.2570 15 6 1.7254 -7.4517 0.1214 16 8 1.5131 -8.1248 -0.8648 17 7 1.2911 -7.8677 1.3275 18 6 0.5632 -9.1334 1.4473 19 6 0.1921 -9.3649 2.8895 20 6 -1.0337 -9.0353 3.5119 21 6 -0.8691 -9.4398 4.7941 22 8 0.3651 -9.9571 4.8732 23 7 0.9352 -9.9116 3.8078 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 0.8535 -5.0450 0.8885 30 1 0.8542 -5.0446 -0.8914 31 1 3.9456 -6.8603 -1.2550 32 1 2.6255 -6.2385 -2.0531 33 1 1.4607 -7.3291 2.1162 34 1 -0.3422 -9.0905 0.8419 35 1 1.1950 -9.9504 1.0988 36 1 -1.9009 -8.5691 3.0679 37 1 -1.5893 -9.3604 5.5948 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691563716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:11 Heat of formation + Delta-G solvation = -19.804793 kcal Electronic energy + Delta-G solvation = -19410.476073 eV Core-core repulsion = 16189.373250 eV Total energy + Delta-G solvation = -3221.102823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.01715 -41.12308 -37.36051 -36.74761 -35.23766 -34.40356 -33.12453 -32.66237 -29.84891 -28.71819 -26.36421 -24.24847 -23.95188 -22.18884 -21.78708 -21.31785 -19.04279 -18.67006 -18.43876 -18.16853 -17.48399 -16.92293 -16.46932 -16.27506 -15.92724 -15.49146 -15.06261 -14.66357 -14.45362 -14.29283 -13.99881 -13.63202 -13.60472 -13.10564 -12.85996 -12.50125 -12.43267 -12.34882 -12.19493 -11.69215 -11.40998 -11.33057 -11.20096 -10.95374 -10.63614 -10.51695 -10.32544 -9.72541 -8.16674 -6.26823 0.49732 1.05800 1.40840 1.41755 1.42664 1.55846 2.20603 2.40648 2.44140 2.99115 3.16525 3.48038 3.51050 3.73907 3.98693 4.14033 4.15155 4.30736 4.40388 4.51810 4.54729 4.67892 4.78557 4.93133 5.07107 5.13077 5.17554 5.27735 5.34953 5.61758 5.85275 5.94456 6.01042 6.31497 6.31654 6.46826 6.91076 7.00254 7.22860 7.42261 8.95292 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.003357 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.781873 B = 8339.158475 C = 9253.067809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.022 3.978 10 C -0.085 4.085 11 C -0.094 4.094 12 C 0.088 3.912 13 H 0.120 0.880 14 N -0.817 5.817 15 C 0.490 3.510 16 O -0.578 6.578 17 N -0.713 5.713 18 C 0.202 3.798 19 C -0.018 4.018 20 C -0.232 4.232 21 C -0.037 4.037 22 O 0.099 5.901 23 N -0.382 5.382 24 H 0.262 0.738 25 H -0.014 1.014 26 H -0.007 1.007 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.349 0.651 32 H 0.347 0.653 33 H 0.413 0.587 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.193 0.807 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -20.181 9.886 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.122 4.122 11 C -0.132 4.132 12 C -0.028 4.028 13 H 0.138 0.862 14 N -0.346 5.346 15 C 0.275 3.725 16 O -0.457 6.457 17 N -0.367 5.367 18 C 0.077 3.923 19 C -0.176 4.176 20 C -0.254 4.254 21 C -0.117 4.117 22 O 0.030 5.970 23 N -0.085 5.085 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.011 0.989 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.249 0.751 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.210 0.790 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -0.310 -20.340 9.374 22.398 hybrid contribution -1.096 0.500 -0.161 1.215 sum -1.406 -19.839 9.214 21.920 Atomic orbital electron populations 1.70099 1.07749 1.27568 1.52119 1.25969 0.95762 1.03300 0.94915 0.85429 0.79144 0.78930 0.77727 1.18623 1.20585 1.20260 1.21770 0.93565 0.92528 1.49875 0.92294 1.19056 0.94561 0.93386 0.94552 1.21290 0.97578 0.92161 1.01209 1.21461 0.96664 0.93131 1.01935 1.21623 0.95455 0.89496 0.96185 0.86182 1.59045 1.17553 1.54895 1.03142 1.22482 0.78753 0.88741 0.82495 1.90670 1.58693 1.58324 1.38044 1.46041 1.57273 1.23061 1.10277 1.19393 0.97775 0.86792 0.88318 1.23637 0.93781 1.02687 0.97490 1.23126 1.00088 1.07543 0.94669 1.26936 0.87488 0.96756 1.00551 1.84827 1.24998 1.60151 1.26987 1.73915 1.22091 1.19424 0.93079 0.92881 0.99595 0.98864 0.92506 0.92758 0.90833 0.93181 0.83721 0.83912 0.75119 0.88694 0.90869 0.78993 0.71947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -31.02 9.11 25.60 0.23 -30.78 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.08 -3.41 5.04 30.60 0.15 -3.26 16 11 C -0.09 -3.00 4.84 30.59 0.15 -2.85 16 12 C 0.09 2.29 3.15 44.17 0.14 2.43 16 13 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 14 N -0.82 -21.66 8.44 -171.80 -1.45 -23.11 16 15 C 0.49 12.80 7.07 87.66 0.62 13.42 16 16 O -0.58 -18.64 16.25 -3.02 -0.05 -18.69 16 17 N -0.71 -15.09 5.55 -466.80 -2.59 -17.68 16 18 C 0.20 4.04 6.26 85.63 0.54 4.57 16 19 C -0.02 -0.33 6.70 43.58 0.29 -0.04 16 20 C -0.23 -2.86 11.12 22.40 0.25 -2.61 16 21 C -0.04 -0.32 12.30 67.18 0.83 0.51 16 22 O 0.10 1.58 11.20 71.55 0.80 2.38 16 23 N -0.38 -7.90 12.07 -49.55 -0.60 -8.50 16 24 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 25 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.35 7.94 9.06 -89.69 -0.81 7.13 16 32 H 0.35 9.71 8.58 -89.69 -0.77 8.94 16 33 H 0.41 7.51 8.46 -92.71 -0.78 6.73 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.26 -0.46 8.06 -2.92 -0.02 -0.48 16 Total: -1.00 -73.94 324.83 0.97 -72.97 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -1.26 Total: 19.91 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.81 Total: -16.99 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -4.35 Total: -106.21 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.75 Total: -16.31 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -73.94 0.97 -72.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691563716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.163 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds