Wall clock time and date at job start Mon Mar 30 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35452 * 128.00690 * 2 1 4 4 O 1.34042 * 106.44741 * 180.23195 * 3 2 1 5 5 N 1.20918 * 111.56512 * 359.74877 * 4 3 2 6 6 C 1.30172 * 111.60755 * 0.02562 * 5 4 3 7 7 C 1.50695 * 126.80171 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47378 * 90.02428 * 7 6 5 9 9 C 1.34781 * 120.00245 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99676 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99971 * 179.97438 * 9 8 7 12 12 H 1.09002 * 109.47083 * 320.00492 * 11 9 8 13 13 N 1.46898 * 109.47113 * 200.00293 * 11 9 8 14 14 C 1.53000 * 109.46801 * 80.00207 * 11 9 8 15 15 C 1.52997 * 109.47060 * 184.99876 * 14 11 9 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 H 1.09000 * 109.47238 * 270.16182 * 1 2 3 25 25 H 1.09003 * 109.47462 * 30.16797 * 1 2 3 26 26 H 1.09011 * 109.46912 * 150.16584 * 1 2 3 27 27 H 1.08000 * 126.77332 * 359.96717 * 3 2 1 28 28 H 1.09004 * 109.47459 * 330.02321 * 7 6 5 29 29 H 1.09009 * 109.47360 * 210.02123 * 7 6 5 30 30 H 0.97000 * 120.00041 * 359.97438 * 8 7 6 31 31 H 1.00899 * 111.00057 * 300.00501 * 13 11 9 32 32 H 1.00902 * 110.99515 * 63.95638 * 13 11 9 33 33 H 1.09002 * 109.47398 * 305.00045 * 14 11 9 34 34 H 1.09001 * 109.47194 * 65.00225 * 14 11 9 35 35 H 1.09002 * 109.47153 * 300.00319 * 15 14 11 36 36 H 1.08998 * 109.47533 * 59.99948 * 15 14 11 37 37 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5747 -0.0052 5 7 3.5878 -0.6345 -0.0033 6 6 2.3776 -1.1139 0.0027 7 6 1.9828 -2.5683 0.0062 8 7 1.8605 -3.0378 1.3885 9 6 1.5139 -4.3162 1.6379 10 8 1.3036 -5.0779 0.7179 11 6 1.3887 -4.7993 3.0598 12 1 2.1919 -4.3726 3.6606 13 7 1.4810 -6.2651 3.0889 14 6 0.0379 -4.3620 3.6299 15 6 -0.0387 -4.7431 5.1097 16 6 -1.3693 -4.3129 5.6711 17 1 -2.0888 -3.8176 5.0359 18 6 -1.6689 -4.5526 6.9954 19 7 -0.7930 -5.1562 7.7689 20 14 -3.3181 -4.0187 7.6915 21 1 -4.4114 -4.6952 6.9483 22 1 -3.3929 -4.3898 9.1274 23 1 -3.4614 -2.5473 7.5519 24 1 -0.3634 0.0029 1.0276 25 1 -0.3634 0.8885 -0.5164 26 1 -0.3633 -0.8916 -0.5113 27 1 2.0575 2.1094 -0.0005 28 1 2.7444 -3.1528 -0.5100 29 1 1.0265 -2.6864 -0.5035 30 1 2.0290 -2.4287 2.1244 31 1 0.7466 -6.6847 2.5388 32 1 2.3889 -6.5764 2.7775 33 1 -0.0675 -3.2820 3.5269 34 1 -0.7646 -4.8589 3.0848 35 1 0.0667 -5.8231 5.2127 36 1 0.7638 -4.2462 5.6549 37 1 -1.0038 -5.3251 8.7005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708237784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:21 Heat of formation + Delta-G solvation = 7.207631 kcal Electronic energy + Delta-G solvation = -19818.948016 eV Core-core repulsion = 16599.016539 eV Total energy + Delta-G solvation = -3219.931477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.29803 -39.81515 -36.29721 -35.18264 -34.12576 -32.80723 -32.41987 -30.11659 -28.59535 -27.99252 -25.95456 -23.50474 -21.98464 -21.56847 -20.72602 -19.87740 -18.00899 -17.91829 -17.00873 -16.35518 -16.01542 -15.55376 -15.27540 -14.66693 -14.38360 -13.98893 -13.85052 -13.56788 -13.46812 -13.08402 -12.85486 -12.48224 -12.31861 -12.02361 -11.57088 -11.43546 -10.88840 -10.76072 -10.59044 -10.52966 -10.11071 -9.81068 -9.68860 -9.38894 -9.18842 -9.01836 -8.37047 -8.22110 -5.94430 -3.96856 1.15025 1.72003 2.71537 2.92511 3.32555 3.34952 3.39931 3.41917 3.76391 4.14848 4.48971 4.54941 4.77051 4.83966 4.99757 5.14477 5.28269 5.36220 5.38549 5.40988 5.48866 5.50550 5.53836 5.81088 5.86684 6.27071 6.41798 6.62842 7.06758 7.32630 7.53289 7.74838 7.78613 7.90896 7.95119 8.12289 8.23187 8.47223 9.10908 9.66233 11.16463 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.004098 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.200992 B = 6830.151388 C = 7744.408779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.185 4.185 3 C -0.066 4.066 4 O 0.108 5.892 5 N -0.347 5.347 6 C -0.003 4.003 7 C 0.200 3.800 8 N -0.725 5.725 9 C 0.486 3.514 10 O -0.552 6.552 11 C 0.080 3.920 12 H 0.098 0.902 13 N -0.806 5.806 14 C -0.095 4.095 15 C 0.031 3.969 16 C -0.523 4.523 17 H 0.051 0.949 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.218 0.782 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.405 0.595 31 H 0.348 0.652 32 H 0.334 0.666 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.035 0.965 36 H 0.013 0.987 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 12.166 -16.106 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.189 4.189 3 C -0.147 4.147 4 O 0.038 5.962 5 N -0.049 5.049 6 C -0.162 4.162 7 C 0.076 3.924 8 N -0.380 5.380 9 C 0.272 3.728 10 O -0.429 6.429 11 C -0.036 4.036 12 H 0.116 0.884 13 N -0.334 5.334 14 C -0.133 4.133 15 C -0.006 4.006 16 C -0.562 4.562 17 H 0.070 0.930 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.235 0.765 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.239 0.761 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.031 0.969 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.818 11.011 -15.806 20.434 hybrid contribution -1.462 1.048 -0.324 1.827 sum 5.356 12.059 -16.130 20.839 Atomic orbital electron populations 1.20172 0.86947 1.03343 1.03449 1.21398 0.98967 0.91349 1.07174 1.25818 0.82913 1.01283 1.04661 1.84838 1.29268 1.15372 1.66686 1.73902 1.22222 0.91433 1.17313 1.23476 0.88863 0.98271 1.05543 1.19378 1.02249 0.85428 0.85370 1.46143 1.71636 1.12701 1.07492 1.22838 0.74537 0.81011 0.94393 1.90652 1.50296 1.54963 1.47037 1.21851 1.02843 0.90049 0.88876 0.88375 1.59001 1.08407 1.04086 1.61878 1.21661 0.91292 0.99253 1.01099 1.19015 0.96254 0.98325 0.87023 1.21231 1.01500 1.38347 0.95096 0.93048 1.24990 0.96738 0.95336 0.97217 1.69966 1.34711 1.42086 1.06392 0.86710 0.84635 0.78939 0.77990 1.20310 1.21319 1.20391 0.90133 0.90821 0.90764 0.76529 0.90001 0.89327 0.76074 0.83783 0.85380 0.92860 0.92764 0.94630 0.96888 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.37 36.00 0.37 -0.21 16 2 C -0.18 -1.63 6.32 -104.42 -0.66 -2.29 16 3 C -0.07 -0.47 12.26 29.74 0.36 -0.11 16 4 O 0.11 1.07 11.20 17.17 0.19 1.27 16 5 N -0.35 -4.18 12.07 33.42 0.40 -3.78 16 6 C 0.00 -0.03 6.70 -82.10 -0.55 -0.58 16 7 C 0.20 2.38 6.18 -5.20 -0.03 2.34 16 8 N -0.73 -9.40 5.55 -61.47 -0.34 -9.74 16 9 C 0.49 7.62 7.07 -10.98 -0.08 7.55 16 10 O -0.55 -10.03 16.25 5.56 0.09 -9.94 16 11 C 0.08 1.33 3.15 -68.86 -0.22 1.12 16 12 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 13 N -0.81 -13.60 8.44 -5.65 -0.05 -13.65 16 14 C -0.09 -1.88 4.78 -26.73 -0.13 -2.01 16 15 C 0.03 0.78 4.86 -27.89 -0.14 0.65 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 17 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.56 7.65 -51.92 -0.40 0.16 16 27 H 0.22 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.01 7.65 -51.92 -0.40 0.61 16 30 H 0.40 4.81 8.46 -40.82 -0.35 4.46 16 31 H 0.35 5.92 8.58 -39.29 -0.34 5.58 16 32 H 0.33 4.93 9.06 -39.29 -0.36 4.57 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -33.38 324.18 -5.73 -39.11 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.16 Total: 8.34 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.47 Total: -6.94 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.75 Total: -53.26 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.28 Total: -8.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.38 -5.73 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708237784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.322 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds