Wall clock time and date at job start Mon Mar 30 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35452 * 128.00690 * 2 1 4 4 O 1.34042 * 106.44741 * 180.23195 * 3 2 1 5 5 N 1.20918 * 111.56512 * 359.74877 * 4 3 2 6 6 C 1.30172 * 111.60755 * 0.02562 * 5 4 3 7 7 C 1.50695 * 126.80171 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47378 * 90.02428 * 7 6 5 9 9 C 1.34781 * 120.00245 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99676 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99971 * 179.97438 * 9 8 7 12 12 H 1.09002 * 109.47083 * 320.00492 * 11 9 8 13 13 N 1.46898 * 109.47113 * 200.00293 * 11 9 8 14 14 C 1.53000 * 109.46801 * 80.00207 * 11 9 8 15 15 C 1.52997 * 109.47060 * 184.99876 * 14 11 9 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 H 1.09000 * 109.47238 * 270.16182 * 1 2 3 25 25 H 1.09003 * 109.47462 * 30.16797 * 1 2 3 26 26 H 1.09011 * 109.46912 * 150.16584 * 1 2 3 27 27 H 1.08000 * 126.77332 * 359.96717 * 3 2 1 28 28 H 1.09004 * 109.47459 * 330.02321 * 7 6 5 29 29 H 1.09009 * 109.47360 * 210.02123 * 7 6 5 30 30 H 0.97000 * 120.00041 * 359.97438 * 8 7 6 31 31 H 1.00899 * 111.00057 * 300.00501 * 13 11 9 32 32 H 1.00902 * 110.99515 * 63.95638 * 13 11 9 33 33 H 1.09002 * 109.47398 * 305.00045 * 14 11 9 34 34 H 1.09001 * 109.47194 * 65.00225 * 14 11 9 35 35 H 1.09002 * 109.47153 * 300.00319 * 15 14 11 36 36 H 1.08998 * 109.47533 * 59.99948 * 15 14 11 37 37 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5747 -0.0052 5 7 3.5878 -0.6345 -0.0033 6 6 2.3776 -1.1139 0.0027 7 6 1.9828 -2.5683 0.0062 8 7 1.8605 -3.0378 1.3885 9 6 1.5139 -4.3162 1.6379 10 8 1.3036 -5.0779 0.7179 11 6 1.3887 -4.7993 3.0598 12 1 2.1919 -4.3726 3.6606 13 7 1.4810 -6.2651 3.0889 14 6 0.0379 -4.3620 3.6299 15 6 -0.0387 -4.7431 5.1097 16 6 -1.3693 -4.3129 5.6711 17 1 -2.0888 -3.8176 5.0359 18 6 -1.6689 -4.5526 6.9954 19 7 -0.7930 -5.1562 7.7689 20 14 -3.3181 -4.0187 7.6915 21 1 -4.4114 -4.6952 6.9483 22 1 -3.3929 -4.3898 9.1274 23 1 -3.4614 -2.5473 7.5519 24 1 -0.3634 0.0029 1.0276 25 1 -0.3634 0.8885 -0.5164 26 1 -0.3633 -0.8916 -0.5113 27 1 2.0575 2.1094 -0.0005 28 1 2.7444 -3.1528 -0.5100 29 1 1.0265 -2.6864 -0.5035 30 1 2.0290 -2.4287 2.1244 31 1 0.7466 -6.6847 2.5388 32 1 2.3889 -6.5764 2.7775 33 1 -0.0675 -3.2820 3.5269 34 1 -0.7646 -4.8589 3.0848 35 1 0.0667 -5.8231 5.2127 36 1 0.7638 -4.2462 5.6549 37 1 -1.0038 -5.3251 8.7005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708237784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:21 Heat of formation + Delta-G solvation = -18.299610 kcal Electronic energy + Delta-G solvation = -19820.054093 eV Core-core repulsion = 16599.016539 eV Total energy + Delta-G solvation = -3221.037554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.05365 -41.10005 -37.31182 -36.68634 -35.02546 -34.80608 -33.21595 -31.93167 -29.47965 -28.88434 -27.60594 -25.17181 -22.75278 -22.45500 -22.24912 -21.26491 -19.01586 -18.72037 -18.36486 -17.97940 -17.33025 -16.91442 -16.43565 -16.28133 -15.68320 -15.19903 -15.03361 -14.53307 -14.26508 -14.11636 -13.94339 -13.82710 -13.75214 -13.40597 -13.10055 -12.76093 -12.53203 -12.29034 -12.15437 -11.83157 -11.67350 -11.34428 -11.20030 -10.97992 -10.47390 -10.32595 -10.31602 -9.65885 -8.12334 -6.22837 0.47166 0.98038 1.41634 1.44270 1.46089 1.53826 2.20191 2.37302 2.46181 2.96646 3.20882 3.43430 3.53635 3.76865 3.93737 4.07706 4.12439 4.30075 4.33929 4.46006 4.65756 4.77745 4.80401 4.86361 4.93359 4.95835 5.16480 5.25555 5.31546 5.58220 5.84900 5.99517 6.05972 6.31111 6.32598 6.50397 6.95802 7.00618 7.21176 7.45416 8.98815 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.004098 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.200992 B = 6830.151388 C = 7744.408779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.199 4.199 3 C -0.044 4.044 4 O 0.104 5.896 5 N -0.379 5.379 6 C -0.017 4.017 7 C 0.204 3.796 8 N -0.712 5.712 9 C 0.494 3.506 10 O -0.577 6.577 11 C 0.087 3.913 12 H 0.107 0.893 13 N -0.818 5.818 14 C -0.080 4.080 15 C 0.038 3.962 16 C -0.543 4.543 17 H 0.058 0.942 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.265 1.265 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.264 0.736 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.411 0.589 31 H 0.347 0.653 32 H 0.347 0.653 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.005 0.995 36 H -0.008 1.008 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 14.351 -16.772 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.203 4.203 3 C -0.125 4.125 4 O 0.035 5.965 5 N -0.081 5.081 6 C -0.175 4.175 7 C 0.079 3.921 8 N -0.365 5.365 9 C 0.280 3.720 10 O -0.456 6.456 11 C -0.029 4.029 12 H 0.125 0.875 13 N -0.347 5.347 14 C -0.119 4.119 15 C 0.001 3.999 16 C -0.581 4.581 17 H 0.076 0.924 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.190 1.190 24 H 0.095 0.905 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.280 0.720 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.247 0.753 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.010 0.990 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.894 13.223 -16.487 21.941 hybrid contribution -1.126 0.423 -0.136 1.210 sum 4.768 13.646 -16.623 22.029 Atomic orbital electron populations 1.20210 0.85815 1.04246 1.03428 1.21646 0.99796 0.90963 1.07917 1.26650 0.81298 1.02802 1.01743 1.84799 1.30689 1.14650 1.66372 1.73902 1.22973 0.92485 1.18782 1.23462 0.89446 0.98189 1.06399 1.19344 1.02222 0.86235 0.84266 1.46013 1.70174 1.11814 1.08505 1.22406 0.74629 0.81616 0.93359 1.90646 1.51721 1.55824 1.47430 1.21641 1.01300 0.90185 0.89783 0.87491 1.58980 1.09197 1.04278 1.62225 1.21389 0.92975 1.00097 0.97418 1.18834 0.94695 0.96051 0.90327 1.21702 1.02602 1.38207 0.95626 0.92385 1.25913 1.00700 0.95297 0.97718 1.70109 1.36945 1.43354 1.06733 0.85585 0.79744 0.79124 0.77081 1.19533 1.21098 1.18964 0.90543 0.88357 0.91507 0.72035 0.90982 0.88821 0.75279 0.83941 0.84022 0.91320 0.93502 0.97614 0.98951 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.37 71.23 0.74 -0.21 16 2 C -0.20 -3.07 6.32 -19.74 -0.12 -3.19 16 3 C -0.04 -0.50 12.26 67.18 0.82 0.32 16 4 O 0.10 1.89 11.20 71.61 0.80 2.69 16 5 N -0.38 -8.79 12.07 -49.56 -0.60 -9.39 16 6 C -0.02 -0.36 6.70 43.58 0.29 -0.07 16 7 C 0.20 4.71 6.18 85.63 0.53 5.24 16 8 N -0.71 -17.83 5.55 -466.78 -2.59 -20.42 16 9 C 0.49 15.19 7.07 87.66 0.62 15.80 16 10 O -0.58 -20.72 16.25 -3.01 -0.05 -20.77 16 11 C 0.09 2.88 3.15 44.17 0.14 3.02 16 12 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 13 N -0.82 -27.74 8.44 -171.80 -1.45 -29.19 16 14 C -0.08 -3.18 4.78 30.59 0.15 -3.03 16 15 C 0.04 1.97 4.86 29.85 0.15 2.11 16 16 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 17 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 18 C 0.00 0.08 5.46 84.65 0.46 0.55 16 19 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 20 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.89 7.65 -2.38 -0.02 0.88 16 27 H 0.26 0.19 8.06 -2.91 -0.02 0.16 16 28 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.09 2.08 7.65 -2.38 -0.02 2.06 16 30 H 0.41 9.31 8.46 -92.71 -0.78 8.52 16 31 H 0.35 11.90 8.58 -89.69 -0.77 11.13 16 32 H 0.35 10.18 9.06 -89.69 -0.81 9.37 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.01 0.31 7.75 -2.39 -0.02 0.29 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -72.23 324.18 1.18 -71.06 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -1.25 Total: 26.23 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.00 Total: -9.71 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -4.35 Total: -115.42 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.75 Total: -18.08 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.23 1.18 -71.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708237784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.756 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds