Wall clock time and date at job start Mon Mar 30 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36338 * 126.19923 * 2 1 4 4 C 1.36248 * 106.89034 * 180.13716 * 3 2 1 5 5 C 1.47250 * 126.16699 * 179.90369 * 4 3 2 6 6 O 1.21633 * 119.99997 * 359.71104 * 5 4 3 7 7 N 1.34777 * 119.99765 * 179.70794 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72408 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52998 * 109.46876 * 299.99984 * 9 8 7 11 11 C 1.53005 * 109.46795 * 60.00011 * 9 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 9 8 7 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 9 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47265 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46830 * 120.00397 * 16 14 12 19 19 H 1.48503 * 109.47108 * 240.00004 * 16 14 12 20 20 N 1.36032 * 107.66847 * 359.63818 * 4 3 2 21 21 C 1.30703 * 108.94299 * 0.22822 * 20 4 3 22 22 O 1.35459 * 125.55031 * 179.97438 * 21 20 4 23 23 H 1.09000 * 109.47434 * 270.29159 * 1 2 3 24 24 H 1.09002 * 109.47389 * 30.29468 * 1 2 3 25 25 H 1.09004 * 109.47238 * 150.28714 * 1 2 3 26 26 H 1.07997 * 126.55840 * 0.02562 * 3 2 1 27 27 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 28 28 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 29 29 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 30 30 H 1.08996 * 109.47009 * 60.00253 * 10 9 8 31 31 H 1.09004 * 109.46783 * 179.97438 * 10 9 8 32 32 H 1.08998 * 109.47156 * 300.00070 * 10 9 8 33 33 H 1.09000 * 109.47011 * 60.00556 * 11 9 8 34 34 H 1.09004 * 109.46658 * 180.02562 * 11 9 8 35 35 H 1.08996 * 109.47069 * 299.99740 * 11 9 8 36 36 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 37 37 H 0.96697 * 114.00446 * 90.02942 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1002 0.0000 4 6 3.5560 0.6497 -0.0031 5 6 4.7692 1.4842 -0.0063 6 8 4.6732 2.6968 -0.0116 7 7 5.9859 0.9045 -0.0033 8 6 7.1928 1.7347 -0.0125 9 6 8.4306 0.8353 -0.0138 10 6 8.4247 -0.0420 1.2397 11 6 8.4136 -0.0538 -1.2588 12 6 9.6722 1.6894 -0.0226 13 1 9.5869 2.7660 -0.0274 14 6 10.9168 1.0963 -0.0247 15 7 11.0206 -0.2147 -0.0194 16 14 12.4559 2.1550 -0.0364 17 1 12.0702 3.5890 -0.0416 18 1 13.2654 1.8649 1.1742 19 1 13.2555 1.8526 -1.2507 20 7 3.5171 -0.7101 0.0032 21 6 2.2692 -1.0988 0.0051 22 8 1.8451 -2.3853 0.0106 23 1 -0.3634 0.0052 1.0276 24 1 -0.3634 0.8873 -0.5184 25 1 -0.3634 -0.8926 -0.5094 26 1 1.9500 2.1316 0.0004 27 1 6.0624 -0.0625 0.0006 28 1 7.1971 2.3599 -0.9056 29 1 7.2049 2.3682 0.8744 30 1 7.5267 -0.6597 1.2465 31 1 9.3063 -0.6831 1.2386 32 1 8.4367 0.5914 2.1266 33 1 8.4179 0.5713 -2.1518 34 1 9.2952 -0.6949 -1.2595 35 1 7.5156 -0.6716 -1.2519 36 1 11.8963 -0.6319 -0.0205 37 1 1.7216 -2.7550 0.8955 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708394893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:42 Heat of formation + Delta-G solvation = -15.483170 kcal Electronic energy + Delta-G solvation = -20255.911827 eV Core-core repulsion = 17034.996403 eV Total energy + Delta-G solvation = -3220.915424 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.25278 -38.90067 -37.46162 -36.19158 -34.36296 -33.08390 -30.75467 -29.20333 -27.60351 -25.59347 -25.54715 -24.91828 -22.68835 -21.54488 -19.90540 -18.84372 -18.47080 -17.50673 -16.45384 -15.85760 -15.62032 -15.03804 -14.70056 -14.54325 -14.48618 -14.33638 -13.29448 -13.07286 -13.05989 -12.81311 -12.44888 -12.11703 -12.06220 -11.27222 -11.10079 -10.79436 -10.59149 -10.37209 -10.27366 -10.12757 -9.94863 -9.64272 -9.51420 -9.18335 -8.67326 -8.65197 -8.33930 -8.14729 -5.93462 -4.03482 1.48823 2.05888 2.29274 3.32760 3.40920 3.43855 3.46897 3.84239 4.02317 4.36828 4.47593 4.54677 4.68845 4.97609 5.16023 5.32942 5.44055 5.71282 6.16565 6.35277 6.36854 6.43622 6.64444 6.88796 6.99486 7.07274 7.14655 7.16836 7.32217 7.46789 7.59485 7.67868 7.78472 8.11998 8.21202 8.30614 8.48183 8.81803 8.97733 9.61822 11.07866 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041203 B = 0.003946 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.392573 B = 7093.406836 C = 7573.898407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.467 5.467 3 C 0.035 3.965 4 C -0.036 4.036 5 C 0.591 3.409 6 O -0.556 6.556 7 N -0.698 5.698 8 C 0.131 3.869 9 C 0.055 3.945 10 C -0.131 4.131 11 C -0.131 4.131 12 C -0.504 4.504 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 N -0.450 5.450 21 C 0.372 3.628 22 O -0.440 6.440 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.195 0.805 27 H 0.407 0.593 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.009 0.991 31 H 0.085 0.915 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.085 0.915 35 H 0.009 0.991 36 H 0.258 0.742 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.973 -3.033 1.719 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.162 5.162 3 C -0.102 4.102 4 C -0.165 4.165 5 C 0.375 3.625 6 O -0.436 6.436 7 N -0.347 5.347 8 C 0.008 3.992 9 C 0.054 3.946 10 C -0.189 4.189 11 C -0.189 4.189 12 C -0.542 4.542 13 H 0.076 0.924 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 N -0.180 5.180 21 C 0.072 3.928 22 O -0.240 6.240 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.212 0.788 27 H 0.244 0.756 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -20.300 -2.914 1.107 20.538 hybrid contribution -0.029 0.307 0.491 0.580 sum -20.329 -2.606 1.598 20.557 Atomic orbital electron populations 1.22105 0.76044 1.05286 1.03848 1.45802 1.08189 1.06612 1.55607 1.22637 0.89777 0.92323 1.05437 1.20701 0.93961 0.89335 1.12487 1.16863 0.82177 0.86283 0.77172 1.90765 1.86927 1.13231 1.52635 1.46156 1.05396 1.11662 1.71529 1.21773 0.83080 0.93761 1.00566 1.18367 0.90581 0.92637 0.92970 1.21822 1.00120 0.99502 0.97423 1.21826 1.00130 0.99507 0.97448 1.21037 0.89876 0.92776 1.50556 0.92368 1.24886 0.98828 0.94940 0.94921 1.69829 1.23439 1.08369 1.50749 0.86527 0.83176 0.80787 0.77446 1.19774 1.21139 1.21126 1.70926 1.16598 1.11314 1.19188 1.20302 0.84173 0.81416 1.06957 1.84890 1.86761 1.18294 1.34070 0.90239 0.89091 0.89022 0.78816 0.75642 0.92558 0.92546 0.97232 0.89659 0.95523 0.95510 0.89661 0.97194 0.93137 0.74267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 11.11 59.84 0.66 0.99 16 2 N -0.47 -4.66 3.16 -125.77 -0.40 -5.06 16 3 C 0.03 0.43 11.29 -16.26 -0.18 0.25 16 4 C -0.04 -0.58 6.97 -83.06 -0.58 -1.16 16 5 C 0.59 11.54 7.81 -12.60 -0.10 11.44 16 6 O -0.56 -12.02 16.88 5.25 0.09 -11.94 16 7 N -0.70 -14.18 4.96 -61.43 -0.30 -14.48 16 8 C 0.13 2.95 4.50 -4.04 -0.02 2.93 16 9 C 0.06 1.35 0.50 -155.66 -0.08 1.27 16 10 C -0.13 -3.13 8.08 37.16 0.30 -2.83 16 11 C -0.13 -3.17 8.08 37.16 0.30 -2.87 16 12 C -0.50 -13.60 8.01 -34.44 -0.28 -13.87 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 15 N -0.89 -24.28 9.35 55.43 0.52 -23.76 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 N -0.45 -7.20 11.03 -11.22 -0.12 -7.33 16 21 C 0.37 4.61 9.03 -89.17 -0.81 3.81 16 22 O -0.44 -4.13 13.55 -18.07 -0.24 -4.38 16 23 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.41 8.12 5.87 -40.82 -0.24 7.88 16 28 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.01 0.19 6.86 -51.93 -0.36 -0.16 16 31 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 35 H 0.01 0.20 6.86 -51.93 -0.36 -0.15 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.40 1.65 9.06 45.56 0.41 2.06 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -33.09 312.20 -5.74 -38.83 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.09 Total: 5.66 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.87 Total: 1.63 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.31 Total: -50.63 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.16 Total: -16.31 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.09 -5.74 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708394893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.345 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds