Wall clock time and date at job start Mon Mar 30 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36338 * 126.19923 * 2 1 4 4 C 1.36248 * 106.89034 * 180.13716 * 3 2 1 5 5 C 1.47250 * 126.16699 * 179.90369 * 4 3 2 6 6 O 1.21633 * 119.99997 * 359.71104 * 5 4 3 7 7 N 1.34777 * 119.99765 * 179.70794 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72408 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52998 * 109.46876 * 299.99984 * 9 8 7 11 11 C 1.53005 * 109.46795 * 60.00011 * 9 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 9 8 7 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 9 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47265 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46830 * 120.00397 * 16 14 12 19 19 H 1.48503 * 109.47108 * 240.00004 * 16 14 12 20 20 N 1.36032 * 107.66847 * 359.63818 * 4 3 2 21 21 C 1.30703 * 108.94299 * 0.22822 * 20 4 3 22 22 O 1.35459 * 125.55031 * 179.97438 * 21 20 4 23 23 H 1.09000 * 109.47434 * 270.29159 * 1 2 3 24 24 H 1.09002 * 109.47389 * 30.29468 * 1 2 3 25 25 H 1.09004 * 109.47238 * 150.28714 * 1 2 3 26 26 H 1.07997 * 126.55840 * 0.02562 * 3 2 1 27 27 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 28 28 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 29 29 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 30 30 H 1.08996 * 109.47009 * 60.00253 * 10 9 8 31 31 H 1.09004 * 109.46783 * 179.97438 * 10 9 8 32 32 H 1.08998 * 109.47156 * 300.00070 * 10 9 8 33 33 H 1.09000 * 109.47011 * 60.00556 * 11 9 8 34 34 H 1.09004 * 109.46658 * 180.02562 * 11 9 8 35 35 H 1.08996 * 109.47069 * 299.99740 * 11 9 8 36 36 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 37 37 H 0.96697 * 114.00446 * 90.02942 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1002 0.0000 4 6 3.5560 0.6497 -0.0031 5 6 4.7692 1.4842 -0.0063 6 8 4.6732 2.6968 -0.0116 7 7 5.9859 0.9045 -0.0033 8 6 7.1928 1.7347 -0.0125 9 6 8.4306 0.8353 -0.0138 10 6 8.4247 -0.0420 1.2397 11 6 8.4136 -0.0538 -1.2588 12 6 9.6722 1.6894 -0.0226 13 1 9.5869 2.7660 -0.0274 14 6 10.9168 1.0963 -0.0247 15 7 11.0206 -0.2147 -0.0194 16 14 12.4559 2.1550 -0.0364 17 1 12.0702 3.5890 -0.0416 18 1 13.2654 1.8649 1.1742 19 1 13.2555 1.8526 -1.2507 20 7 3.5171 -0.7101 0.0032 21 6 2.2692 -1.0988 0.0051 22 8 1.8451 -2.3853 0.0106 23 1 -0.3634 0.0052 1.0276 24 1 -0.3634 0.8873 -0.5184 25 1 -0.3634 -0.8926 -0.5094 26 1 1.9500 2.1316 0.0004 27 1 6.0624 -0.0625 0.0006 28 1 7.1971 2.3599 -0.9056 29 1 7.2049 2.3682 0.8744 30 1 7.5267 -0.6597 1.2465 31 1 9.3063 -0.6831 1.2386 32 1 8.4367 0.5914 2.1266 33 1 8.4179 0.5713 -2.1518 34 1 9.2952 -0.6949 -1.2595 35 1 7.5156 -0.6716 -1.2519 36 1 11.8963 -0.6319 -0.0205 37 1 1.7216 -2.7550 0.8955 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708394893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:42 Heat of formation + Delta-G solvation = -41.850615 kcal Electronic energy + Delta-G solvation = -20257.055205 eV Core-core repulsion = 17034.996403 eV Total energy + Delta-G solvation = -3222.058802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.19509 -40.44410 -38.32331 -37.97362 -35.28659 -34.80801 -32.66692 -30.24386 -28.42085 -27.56809 -27.39044 -26.63797 -23.96834 -22.40170 -21.26872 -20.57609 -19.51605 -18.70358 -17.79311 -17.35613 -16.80218 -16.50074 -16.38417 -16.07760 -15.42545 -15.28484 -14.80754 -14.67906 -14.53125 -13.97967 -13.54360 -13.49636 -13.17058 -13.09553 -12.90006 -12.67740 -12.54522 -12.25076 -12.11760 -11.47904 -11.46895 -11.29125 -10.95737 -10.81460 -10.67702 -10.38724 -9.98315 -9.52547 -7.99523 -6.16063 0.49385 1.09326 1.42529 1.44040 1.47325 1.57677 2.29071 2.47484 2.50723 2.88481 3.23677 3.65444 3.84332 4.12166 4.37291 4.43179 4.49259 4.53034 4.71848 4.72613 4.87911 4.98845 5.06992 5.13612 5.19964 5.26417 5.37786 5.59383 5.66712 5.66757 5.68923 6.12764 6.21835 6.44249 6.49774 6.64343 6.81210 6.88361 7.29191 7.51592 9.00046 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041203 B = 0.003946 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.392573 B = 7093.406836 C = 7573.898407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.454 5.454 3 C 0.063 3.937 4 C -0.081 4.081 5 C 0.591 3.409 6 O -0.585 6.585 7 N -0.700 5.700 8 C 0.146 3.854 9 C 0.050 3.950 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.526 4.526 13 H 0.049 0.951 14 C 0.026 3.974 15 N -0.901 5.901 16 Si 0.950 3.050 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.282 1.282 20 N -0.494 5.494 21 C 0.380 3.620 22 O -0.440 6.440 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.103 0.897 26 H 0.220 0.780 27 H 0.409 0.591 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.231 -3.323 1.893 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.148 5.148 3 C -0.077 4.077 4 C -0.208 4.208 5 C 0.378 3.622 6 O -0.466 6.466 7 N -0.350 5.350 8 C 0.023 3.977 9 C 0.050 3.950 10 C -0.177 4.177 11 C -0.177 4.177 12 C -0.565 4.565 13 H 0.067 0.933 14 C -0.174 4.174 15 N -0.540 5.540 16 Si 0.777 3.223 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.208 1.208 20 N -0.224 5.224 21 C 0.077 3.923 22 O -0.244 6.244 23 H 0.121 0.879 24 H 0.129 0.871 25 H 0.122 0.878 26 H 0.236 0.764 27 H 0.246 0.754 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -22.604 -3.242 1.299 22.873 hybrid contribution 0.510 0.317 0.445 0.748 sum -22.094 -2.924 1.744 22.355 Atomic orbital electron populations 1.22548 0.72499 1.06932 1.05935 1.46032 1.10032 1.05097 1.53615 1.22955 0.88695 0.93765 1.02236 1.20246 0.93822 0.89703 1.17065 1.17291 0.82750 0.86348 0.75782 1.90729 1.87446 1.14530 1.53917 1.46020 1.05212 1.11349 1.72395 1.21373 0.83616 0.93344 0.99413 1.18370 0.90651 0.92761 0.93246 1.21651 0.99955 0.99090 0.96958 1.21660 0.99913 0.99101 0.97044 1.21295 0.91318 0.92715 1.51168 0.93290 1.25517 1.01224 0.96027 0.94630 1.69939 1.24000 1.09328 1.50761 0.85628 0.79967 0.79275 0.77459 1.19737 1.20713 1.20777 1.70761 1.19192 1.11322 1.21170 1.20311 0.83844 0.82680 1.05447 1.84858 1.86331 1.16928 1.36274 0.87894 0.87111 0.87821 0.76376 0.75450 0.93814 0.93637 0.95323 0.91791 0.96002 0.96121 0.91765 0.95406 0.93055 0.71453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 11.11 127.77 1.42 1.73 16 2 N -0.45 -7.63 3.16 -662.75 -2.09 -9.72 16 3 C 0.06 1.41 11.29 83.53 0.94 2.35 16 4 C -0.08 -2.57 6.97 40.40 0.28 -2.29 16 5 C 0.59 23.27 7.81 86.61 0.68 23.95 16 6 O -0.58 -25.52 16.88 -4.14 -0.07 -25.59 16 7 N -0.70 -28.84 4.96 -466.52 -2.31 -31.15 16 8 C 0.15 6.75 4.50 86.38 0.39 7.14 16 9 C 0.05 2.50 0.50 -52.93 -0.03 2.48 16 10 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 11 C -0.12 -5.82 8.08 71.98 0.58 -5.24 16 12 C -0.53 -28.89 8.01 25.60 0.21 -28.69 16 13 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 14 C 0.03 1.38 5.15 84.65 0.44 1.82 16 15 N -0.90 -49.89 9.35 21.45 0.20 -49.69 16 16 Si 0.95 43.64 29.54 68.60 2.03 45.66 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 N -0.49 -15.34 11.03 -303.16 -3.34 -18.68 16 21 C 0.38 8.54 9.03 179.84 1.62 10.16 16 22 O -0.44 -7.06 13.55 -87.57 -1.19 -8.24 16 23 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 24 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 26 H 0.22 3.64 8.06 -2.91 -0.02 3.62 16 27 H 0.41 16.43 5.87 -92.71 -0.54 15.88 16 28 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 31 H 0.06 3.38 6.07 -2.38 -0.01 3.36 16 32 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 3.41 6.07 -2.38 -0.01 3.40 16 35 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 36 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.42 2.21 9.06 -74.06 -0.67 1.54 16 Total: -1.00 -72.35 312.20 0.22 -72.13 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.11 Total: 17.03 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 7.11 Total: 8.26 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -7.55 Total: -109.25 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.26 Total: -33.84 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -72.35 0.22 -72.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708394893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.279 kcal (2) G-P(sol) polarization free energy of solvation -72.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds