Wall clock time and date at job start Mon Mar 30 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47304 * 121.68513 * 3 2 1 5 5 N 1.46499 * 109.47444 * 176.98758 * 4 3 2 6 6 C 1.46495 * 119.99897 * 266.61538 * 5 4 3 7 7 C 1.50701 * 109.47137 * 269.99693 * 6 5 4 8 8 H 1.08006 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00291 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99989 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00077 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46921 * 89.99636 * 11 9 7 13 13 H 1.48504 * 109.46828 * 210.00053 * 11 9 7 14 14 H 1.48498 * 109.46941 * 329.99531 * 11 9 7 15 15 C 1.34776 * 119.99826 * 86.60477 * 5 4 3 16 16 O 1.21279 * 119.99917 * 4.86360 * 15 5 4 17 17 C 1.50697 * 119.99990 * 184.85167 * 15 5 4 18 18 H 1.09004 * 109.46855 * 44.90038 * 17 15 5 19 19 O 1.42899 * 109.47135 * 164.89349 * 17 15 5 20 20 N 1.46298 * 113.99929 * 204.99992 * 19 17 15 21 21 C 1.52994 * 109.47519 * 284.90143 * 17 15 5 22 22 C 1.52996 * 117.52271 * 117.75163 * 21 17 15 23 23 C 1.52995 * 60.00181 * 107.48309 * 22 21 17 24 24 H 1.08997 * 109.47433 * 1.68002 * 3 2 1 25 25 H 1.09003 * 109.46594 * 241.68329 * 3 2 1 26 26 H 1.09005 * 109.46752 * 56.98669 * 4 3 2 27 27 H 1.09000 * 109.46507 * 296.98893 * 4 3 2 28 28 H 1.09003 * 109.47685 * 29.99684 * 6 5 4 29 29 H 1.09005 * 109.47286 * 149.99773 * 6 5 4 30 30 H 0.97003 * 120.00155 * 180.02562 * 10 9 7 31 31 H 1.00904 * 111.00111 * 56.05405 * 20 19 17 32 32 H 1.00902 * 111.00236 * 180.02562 * 20 19 17 33 33 H 1.09005 * 115.54697 * 332.04951 * 21 17 15 34 34 H 1.09003 * 117.50495 * 214.97183 * 22 21 17 35 35 H 1.09001 * 117.50115 * 359.97438 * 22 21 17 36 36 H 1.09002 * 117.49808 * 252.51409 * 23 22 21 37 37 H 1.09006 * 117.50180 * 107.49083 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7585 -1.2275 5 7 4.5808 0.8213 -1.1899 6 6 5.2492 1.9788 -0.5901 7 6 5.4828 3.0273 -1.6470 8 1 5.1656 2.8491 -2.6640 9 6 6.1025 4.2137 -1.3161 10 7 6.4892 4.4305 -0.0780 11 14 6.3928 5.5131 -2.6264 12 1 5.2240 6.4273 -2.6844 13 1 7.6131 6.2901 -2.2911 14 1 6.5722 4.8546 -3.9453 15 6 5.3120 -0.1859 -1.7070 16 8 4.7621 -1.1015 -2.2815 17 6 6.8128 -0.1742 -1.5715 18 1 7.0834 0.0991 -0.5515 19 8 7.3281 -1.4735 -1.8689 20 7 8.6197 -1.7588 -1.2439 21 6 7.4051 0.8450 -2.5467 22 6 8.1771 2.0252 -1.9535 23 6 8.9291 0.9019 -2.6701 24 1 2.9718 -1.0263 -0.0301 25 1 2.9710 0.4883 0.9047 26 1 2.7104 1.7697 -1.2251 27 1 2.7993 0.2407 -2.1322 28 1 4.6214 2.3922 0.1992 29 1 6.2053 1.6683 -0.1687 30 1 6.9249 5.2653 0.1550 31 1 8.5712 -1.6404 -0.2430 32 1 8.9407 -2.6849 -1.4836 33 1 6.8201 1.0282 -3.4480 34 1 8.1001 2.9850 -2.4645 35 1 8.2629 2.0761 -0.8681 36 1 9.5097 0.2134 -2.0561 37 1 9.3467 1.1225 -3.6525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708776876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:28 Heat of formation + Delta-G solvation = 26.075003 kcal Electronic energy + Delta-G solvation = -21147.684804 eV Core-core repulsion = 17928.571478 eV Total energy + Delta-G solvation = -3219.113326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68587 -37.29787 -36.56397 -35.55574 -34.77901 -32.87178 -31.39403 -29.91862 -27.29795 -26.91053 -23.69613 -23.03828 -21.40020 -20.50117 -18.70392 -17.49525 -17.21974 -16.63566 -16.10213 -15.62653 -15.45880 -14.75194 -14.64538 -14.46421 -14.04584 -13.88036 -13.43699 -12.96150 -12.54656 -12.43796 -12.27586 -12.18886 -11.70274 -11.65920 -11.45385 -11.06940 -11.00633 -10.70938 -10.62261 -10.27529 -10.16029 -9.81760 -9.64582 -9.45141 -9.14050 -8.62495 -8.46335 -7.96535 -6.23043 -4.25231 2.69074 2.89698 2.91704 3.15409 3.18500 3.27653 3.31905 3.79822 4.28274 4.36758 4.66063 5.10684 5.13708 5.27037 5.30685 5.38116 5.46749 5.49947 5.62032 5.88486 5.97790 6.02156 6.20835 6.25875 6.43873 6.54266 6.82153 6.90869 6.98668 7.04283 7.07129 7.23337 7.39473 7.67651 7.71737 7.98306 8.09332 8.69304 8.83810 9.39133 10.84291 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.009088 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.385010 B = 3080.299624 C = 4903.941940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.046 4.046 4 C 0.127 3.873 5 N -0.590 5.590 6 C 0.234 3.766 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.075 3.925 10 N -0.889 5.889 11 Si 0.882 3.118 12 H -0.281 1.281 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.526 3.474 16 O -0.554 6.554 17 C 0.114 3.886 18 H 0.089 0.911 19 O -0.210 6.210 20 N -0.672 5.672 21 C -0.149 4.149 22 C -0.117 4.117 23 C -0.188 4.188 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.335 0.665 32 H 0.361 0.639 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 -6.648 1.774 8.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.002 3.998 5 N -0.322 5.322 6 C 0.115 3.885 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.128 4.128 10 N -0.527 5.527 11 Si 0.710 3.290 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.312 3.688 16 O -0.432 6.432 17 C 0.052 3.948 18 H 0.106 0.894 19 O -0.224 6.224 20 N -0.239 5.239 21 C -0.168 4.168 22 C -0.154 4.154 23 C -0.225 4.225 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.175 0.825 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.480 -6.518 1.039 7.051 hybrid contribution 0.239 0.343 0.020 0.419 sum 2.720 -6.175 1.059 6.830 Atomic orbital electron populations 1.81180 1.13058 1.09375 1.09032 1.29077 0.95092 0.92680 0.92843 1.19784 0.81419 1.04682 1.02852 1.21117 0.81324 1.01235 0.96125 1.48091 1.04883 1.20948 1.58307 1.19620 0.93187 0.81669 0.94033 1.21313 1.39038 1.00247 0.95634 0.92129 1.24759 0.95240 0.97683 0.95159 1.69883 1.40125 1.25599 1.17126 0.86761 0.77935 0.81979 0.82372 1.20739 1.20981 1.19682 1.20087 0.88394 0.81878 0.78403 1.90640 1.73158 1.36679 1.42759 1.21346 0.90562 0.83608 0.99276 0.89387 1.90793 1.30750 1.32484 1.68392 1.64422 1.10299 1.35265 1.13868 1.22087 0.94095 0.99589 1.01034 1.22767 0.99975 0.92620 1.00059 1.23151 0.93676 1.03565 1.02105 0.87427 0.86985 0.88991 0.90016 0.94382 0.94094 0.92574 0.85506 0.82530 0.88455 0.89180 0.88727 0.87596 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.39 18.54 42.15 0.78 -6.61 16 2 C 0.22 3.11 15.43 -20.76 -0.32 2.79 16 3 C -0.05 -0.57 6.01 -29.52 -0.18 -0.75 16 4 C 0.13 1.96 5.37 -4.04 -0.02 1.94 16 5 N -0.59 -10.56 2.46 -175.06 -0.43 -10.99 16 6 C 0.23 4.67 4.68 -5.20 -0.02 4.65 16 7 C -0.52 -11.78 6.39 -34.44 -0.22 -12.00 16 8 H 0.06 1.44 7.81 -52.48 -0.41 1.03 16 9 C 0.07 1.74 4.10 -17.82 -0.07 1.67 16 10 N -0.89 -21.64 13.29 55.43 0.74 -20.90 16 11 Si 0.88 19.12 28.61 -169.99 -4.86 14.26 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 C 0.53 10.04 6.92 -10.99 -0.08 9.96 16 16 O -0.55 -11.85 16.17 -13.88 -0.22 -12.08 16 17 C 0.11 2.00 2.26 -27.89 -0.06 1.94 16 18 H 0.09 1.46 6.30 -51.93 -0.33 1.14 16 19 O -0.21 -3.60 11.07 -33.36 -0.37 -3.97 16 20 N -0.67 -8.24 8.88 60.35 0.54 -7.70 16 21 C -0.15 -2.74 4.00 -90.62 -0.36 -3.10 16 22 C -0.12 -2.16 6.91 -26.74 -0.18 -2.34 16 23 C -0.19 -3.08 9.89 -26.73 -0.26 -3.34 16 24 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.09 1.41 8.05 -51.93 -0.42 0.99 16 27 H 0.08 1.32 7.46 -51.93 -0.39 0.93 16 28 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.04 0.84 4.94 -51.93 -0.26 0.58 16 30 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 31 H 0.33 3.41 9.06 -39.29 -0.36 3.05 16 32 H 0.36 3.51 9.25 -39.29 -0.36 3.15 16 33 H 0.10 1.97 8.06 -51.93 -0.42 1.55 16 34 H 0.09 1.81 6.37 -51.93 -0.33 1.48 16 35 H 0.09 1.81 7.53 -51.93 -0.39 1.42 16 36 H 0.11 1.63 6.44 -51.93 -0.33 1.29 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 314.39 15.07 4.74 4.74 Total: -1.00 -27.87 314.39 -5.70 -33.57 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.82 Total: 8.28 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.79 Total: 1.41 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 1.62 Total: -46.20 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.59 Total: -16.05 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.86 Total: 14.26 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.87 -5.70 -33.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708776876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.642 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds