Wall clock time and date at job start Mon Mar 30 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47304 * 121.68513 * 3 2 1 5 5 N 1.46499 * 109.47444 * 176.98758 * 4 3 2 6 6 C 1.46495 * 119.99897 * 266.61538 * 5 4 3 7 7 C 1.50701 * 109.47137 * 269.99693 * 6 5 4 8 8 H 1.08006 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00291 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99989 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00077 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46921 * 89.99636 * 11 9 7 13 13 H 1.48504 * 109.46828 * 210.00053 * 11 9 7 14 14 H 1.48498 * 109.46941 * 329.99531 * 11 9 7 15 15 C 1.34776 * 119.99826 * 86.60477 * 5 4 3 16 16 O 1.21279 * 119.99917 * 4.86360 * 15 5 4 17 17 C 1.50697 * 119.99990 * 184.85167 * 15 5 4 18 18 H 1.09004 * 109.46855 * 44.90038 * 17 15 5 19 19 O 1.42899 * 109.47135 * 164.89349 * 17 15 5 20 20 N 1.46298 * 113.99929 * 204.99992 * 19 17 15 21 21 C 1.52994 * 109.47519 * 284.90143 * 17 15 5 22 22 C 1.52996 * 117.52271 * 117.75163 * 21 17 15 23 23 C 1.52995 * 60.00181 * 107.48309 * 22 21 17 24 24 H 1.08997 * 109.47433 * 1.68002 * 3 2 1 25 25 H 1.09003 * 109.46594 * 241.68329 * 3 2 1 26 26 H 1.09005 * 109.46752 * 56.98669 * 4 3 2 27 27 H 1.09000 * 109.46507 * 296.98893 * 4 3 2 28 28 H 1.09003 * 109.47685 * 29.99684 * 6 5 4 29 29 H 1.09005 * 109.47286 * 149.99773 * 6 5 4 30 30 H 0.97003 * 120.00155 * 180.02562 * 10 9 7 31 31 H 1.00904 * 111.00111 * 56.05405 * 20 19 17 32 32 H 1.00902 * 111.00236 * 180.02562 * 20 19 17 33 33 H 1.09005 * 115.54697 * 332.04951 * 21 17 15 34 34 H 1.09003 * 117.50495 * 214.97183 * 22 21 17 35 35 H 1.09001 * 117.50115 * 359.97438 * 22 21 17 36 36 H 1.09002 * 117.49808 * 252.51409 * 23 22 21 37 37 H 1.09006 * 117.50180 * 107.49083 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7585 -1.2275 5 7 4.5808 0.8213 -1.1899 6 6 5.2492 1.9788 -0.5901 7 6 5.4828 3.0273 -1.6470 8 1 5.1656 2.8491 -2.6640 9 6 6.1025 4.2137 -1.3161 10 7 6.4892 4.4305 -0.0780 11 14 6.3928 5.5131 -2.6264 12 1 5.2240 6.4273 -2.6844 13 1 7.6131 6.2901 -2.2911 14 1 6.5722 4.8546 -3.9453 15 6 5.3120 -0.1859 -1.7070 16 8 4.7621 -1.1015 -2.2815 17 6 6.8128 -0.1742 -1.5715 18 1 7.0834 0.0991 -0.5515 19 8 7.3281 -1.4735 -1.8689 20 7 8.6197 -1.7588 -1.2439 21 6 7.4051 0.8450 -2.5467 22 6 8.1771 2.0252 -1.9535 23 6 8.9291 0.9019 -2.6701 24 1 2.9718 -1.0263 -0.0301 25 1 2.9710 0.4883 0.9047 26 1 2.7104 1.7697 -1.2251 27 1 2.7993 0.2407 -2.1322 28 1 4.6214 2.3922 0.1992 29 1 6.2053 1.6683 -0.1687 30 1 6.9249 5.2653 0.1550 31 1 8.5712 -1.6404 -0.2430 32 1 8.9407 -2.6849 -1.4836 33 1 6.8201 1.0282 -3.4480 34 1 8.1001 2.9850 -2.4645 35 1 8.2629 2.0761 -0.8681 36 1 9.5097 0.2134 -2.0561 37 1 9.3467 1.1225 -3.6525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708776876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:27 Heat of formation + Delta-G solvation = 9.497149 kcal Electronic energy + Delta-G solvation = -21148.403674 eV Core-core repulsion = 17928.571478 eV Total energy + Delta-G solvation = -3219.832196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14789 -38.62332 -37.86069 -36.98793 -36.13133 -34.57456 -32.74160 -31.05254 -28.96487 -28.20094 -25.11574 -24.63190 -22.82215 -21.91524 -20.15207 -18.73949 -18.56380 -18.27049 -17.51184 -16.94680 -16.70895 -16.29372 -16.04334 -15.80291 -15.41862 -15.18149 -14.76380 -14.35799 -14.13985 -13.84533 -13.63768 -13.54419 -13.21774 -13.01226 -12.87589 -12.71683 -12.64221 -12.13281 -11.96770 -11.79592 -11.70822 -11.43494 -11.12855 -10.85559 -10.63869 -10.32149 -9.70749 -9.50161 -8.05480 -6.09049 1.42601 1.44883 1.50545 1.53448 1.62854 1.77755 1.78528 2.45256 2.56129 3.15985 3.26625 3.31069 3.76957 3.97457 4.06012 4.12695 4.16453 4.24519 4.45287 4.54145 4.68960 4.79701 4.87861 4.97892 5.04356 5.11560 5.35655 5.37798 5.52433 5.61978 5.75087 5.90995 6.01622 6.22982 6.26614 6.53679 6.55457 6.94307 7.28750 7.57134 9.00638 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.009088 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.385010 B = 3080.299624 C = 4903.941940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.245 3.755 3 C -0.030 4.030 4 C 0.123 3.877 5 N -0.586 5.586 6 C 0.247 3.753 7 C -0.518 4.518 8 H 0.043 0.957 9 C 0.051 3.949 10 N -0.906 5.906 11 Si 0.916 3.084 12 H -0.286 1.286 13 H -0.283 1.283 14 H -0.277 1.277 15 C 0.522 3.478 16 O -0.579 6.579 17 C 0.125 3.875 18 H 0.099 0.901 19 O -0.240 6.240 20 N -0.660 5.660 21 C -0.159 4.159 22 C -0.120 4.120 23 C -0.162 4.162 24 H 0.119 0.881 25 H 0.135 0.865 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.350 0.650 32 H 0.376 0.624 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.179 -7.328 2.418 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.072 4.072 3 C -0.071 4.071 4 C -0.002 4.002 5 N -0.317 5.317 6 C 0.127 3.873 7 C -0.557 4.557 8 H 0.062 0.938 9 C -0.150 4.150 10 N -0.546 5.546 11 Si 0.744 3.256 12 H -0.213 1.213 13 H -0.209 1.209 14 H -0.202 1.202 15 C 0.309 3.691 16 O -0.460 6.460 17 C 0.063 3.937 18 H 0.116 0.884 19 O -0.252 6.252 20 N -0.232 5.232 21 C -0.178 4.178 22 C -0.157 4.157 23 C -0.199 4.199 24 H 0.137 0.863 25 H 0.153 0.847 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.192 0.808 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.140 0.860 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.472 -7.200 1.679 8.168 hybrid contribution -0.012 0.520 -0.215 0.563 sum 3.460 -6.680 1.464 7.664 Atomic orbital electron populations 1.81210 1.14322 1.10828 1.10387 1.29208 0.95083 0.91366 0.91561 1.19705 0.80120 1.05095 1.02194 1.21209 0.80030 1.01691 0.97285 1.48025 1.05804 1.20105 1.57773 1.19363 0.93314 0.81545 0.93108 1.21367 1.38166 1.00782 0.95351 0.93829 1.25042 0.95442 0.98633 0.95847 1.69918 1.41036 1.25860 1.17793 0.86235 0.77505 0.80723 0.81113 1.21301 1.20882 1.20209 1.20432 0.89243 0.81536 0.77857 1.90620 1.73818 1.37674 1.43920 1.21139 0.89420 0.83812 0.99350 0.88382 1.90749 1.33079 1.31796 1.69541 1.64390 1.07205 1.36688 1.14940 1.22026 0.95312 1.00053 1.00444 1.22559 1.01494 0.92135 0.99542 1.23208 0.92342 1.01938 1.02392 0.86296 0.84691 0.88981 0.90916 0.94526 0.94018 0.92707 0.83851 0.80808 0.90931 0.91150 0.89296 0.86002 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.70 18.54 20.01 0.37 -15.33 16 2 C 0.24 6.55 15.43 89.44 1.38 7.93 16 3 C -0.03 -0.69 6.01 28.79 0.17 -0.52 16 4 C 0.12 3.65 5.37 86.38 0.46 4.11 16 5 N -0.59 -20.38 2.46 -826.16 -2.03 -22.42 16 6 C 0.25 9.57 4.68 85.63 0.40 9.97 16 7 C -0.52 -23.09 6.39 25.60 0.16 -22.93 16 8 H 0.04 2.08 7.81 -2.91 -0.02 2.06 16 9 C 0.05 2.37 4.10 84.65 0.35 2.72 16 10 N -0.91 -43.40 13.29 21.45 0.28 -43.11 16 11 Si 0.92 38.95 28.61 68.60 1.96 40.91 16 12 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 15 C 0.52 19.47 6.92 87.66 0.61 20.08 16 16 O -0.58 -24.47 16.17 15.56 0.25 -24.22 16 17 C 0.12 4.21 2.26 29.85 0.07 4.28 16 18 H 0.10 3.07 6.30 -2.38 -0.02 3.05 16 19 O -0.24 -7.79 11.07 -31.57 -0.35 -8.13 16 20 N -0.66 -14.34 8.88 37.02 0.33 -14.01 16 21 C -0.16 -5.72 4.00 -10.80 -0.04 -5.76 16 22 C -0.12 -4.31 6.91 30.59 0.21 -4.10 16 23 C -0.16 -4.99 9.89 30.59 0.30 -4.69 16 24 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.09 2.74 8.05 -2.38 -0.02 2.72 16 27 H 0.07 2.32 7.46 -2.39 -0.02 2.30 16 28 H 0.04 1.46 8.07 -2.39 -0.02 1.44 16 29 H 0.04 1.65 4.94 -2.38 -0.01 1.64 16 30 H 0.26 12.37 8.31 -92.71 -0.77 11.60 16 31 H 0.35 6.04 9.06 -89.69 -0.81 5.22 16 32 H 0.38 6.21 9.25 -89.69 -0.83 5.38 16 33 H 0.07 2.96 8.06 -2.38 -0.02 2.94 16 34 H 0.07 2.81 6.37 -2.39 -0.02 2.79 16 35 H 0.09 3.30 7.53 -2.39 -0.02 3.28 16 36 H 0.12 3.37 6.44 -2.39 -0.02 3.36 16 37 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -58.26 314.39 4.37 -53.90 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.52 Total: 21.30 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.07 Total: 11.11 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -1.05 Total: -94.87 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.10 Total: -32.35 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.96 Total: 40.91 kcal Total: -58.26 4.37 -53.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708776876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.394 kcal (2) G-P(sol) polarization free energy of solvation -58.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds