Wall clock time and date at job start Mon Mar 30 2020 04:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50698 * 115.54966 * 2 1 4 4 O 1.20823 * 120.00078 * 214.32444 * 3 2 1 5 5 O 1.34233 * 119.99646 * 34.05944 * 3 2 1 6 6 C 1.52997 * 117.51297 * 145.70305 * 2 1 3 7 7 C 1.53003 * 117.49457 * 214.33167 * 2 1 3 8 8 H 1.08998 * 117.49419 * 144.99996 * 7 2 1 9 9 C 1.50687 * 117.50064 * 359.97438 * 7 2 1 10 10 O 1.21287 * 120.00450 * 0.02562 * 9 7 2 11 11 N 1.34785 * 120.00047 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00282 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47423 * 181.16706 * 12 11 9 14 14 C 1.50707 * 115.54795 * 39.68083 * 13 12 11 15 15 H 1.08007 * 119.99475 * 264.52874 * 14 13 12 16 16 C 1.37870 * 120.00361 * 84.53037 * 14 13 12 17 17 N 1.31519 * 119.99998 * 352.93236 * 16 14 13 18 18 Si 1.86801 * 120.00355 * 172.92700 * 16 14 13 19 19 H 1.48498 * 109.46949 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47337 * 120.00235 * 18 16 14 21 21 H 1.48499 * 109.47076 * 240.00500 * 18 16 14 22 22 C 1.53001 * 117.49963 * 253.97475 * 13 12 11 23 23 C 1.52995 * 117.50290 * 185.34992 * 13 12 11 24 24 H 1.08996 * 109.46841 * 85.57927 * 1 2 3 25 25 H 1.08994 * 109.47264 * 205.58198 * 1 2 3 26 26 H 1.08995 * 109.46825 * 325.58033 * 1 2 3 27 27 H 0.96703 * 116.99853 * 179.97438 * 5 3 2 28 28 H 1.09000 * 117.49686 * 214.96830 * 6 2 1 29 29 H 1.08999 * 117.50218 * 359.97438 * 6 2 1 30 30 H 0.96995 * 119.99559 * 0.02562 * 11 9 7 31 31 H 1.09006 * 109.46875 * 301.16869 * 12 11 9 32 32 H 1.09001 * 109.47390 * 61.16693 * 12 11 9 33 33 H 0.96995 * 119.99955 * 185.03339 * 17 16 14 34 34 H 1.08992 * 117.49990 * 359.97438 * 22 13 12 35 35 H 1.09004 * 117.49905 * 145.02051 * 22 13 12 36 36 H 1.09006 * 117.50047 * 214.97708 * 23 13 12 37 37 H 1.09003 * 117.49931 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2202 1.5320 -0.5900 5 8 1.6006 2.3805 0.6511 6 6 2.2369 -1.1210 0.7646 7 6 2.2365 -1.1208 -0.7654 8 1 3.1713 -0.8747 -1.2689 9 6 1.3720 -2.1404 -1.4611 10 8 0.1638 -2.0531 -1.4015 11 7 1.9416 -3.1489 -2.1504 12 6 1.1012 -4.1398 -2.8272 13 6 1.9900 -5.1842 -3.5056 14 6 3.2050 -5.6109 -2.7228 15 1 4.1589 -5.1389 -2.9064 16 6 3.0988 -6.6039 -1.7722 17 7 1.9167 -7.0815 -1.4493 18 14 4.6340 -7.2711 -0.9429 19 1 5.8295 -6.5717 -1.4784 20 1 4.5434 -7.0446 0.5219 21 1 4.7493 -8.7268 -1.2125 22 6 2.1167 -5.1216 -5.0291 23 6 1.3028 -6.2396 -4.3744 24 1 -0.3633 0.0792 -1.0246 25 1 -0.3633 -0.9269 0.4437 26 1 -0.3633 0.8477 0.5809 27 1 2.0550 3.2336 0.6231 28 1 3.1721 -0.8751 1.2677 29 1 1.6119 -1.8585 1.2682 30 1 2.9078 -3.2185 -2.1984 31 1 0.4575 -4.6299 -2.0967 32 1 0.4865 -3.6431 -3.5779 33 1 1.8344 -7.7270 -0.7300 34 1 1.5667 -4.3367 -5.5481 35 1 3.0791 -5.3890 -5.4655 36 1 1.7298 -7.2425 -4.3801 37 1 0.2175 -6.1902 -4.4623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713516584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:33 Heat of formation + Delta-G solvation = -83.271068 kcal Electronic energy + Delta-G solvation = -20412.223082 eV Core-core repulsion = 17156.075403 eV Total energy + Delta-G solvation = -3256.147679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82188 -39.27289 -37.14675 -36.37933 -35.83194 -33.26779 -32.05374 -28.94927 -26.65700 -25.48210 -24.62479 -23.18288 -21.19103 -20.50769 -19.63557 -18.88737 -17.99362 -17.06179 -16.43338 -15.86738 -15.67428 -14.92175 -14.75582 -14.50869 -13.96736 -13.91662 -13.03726 -12.98893 -12.81242 -12.45304 -12.28813 -12.09146 -11.88699 -11.66684 -11.64502 -11.07661 -10.95974 -10.76628 -10.55944 -10.32773 -10.25954 -10.15858 -9.67429 -9.15855 -8.94639 -8.56608 -8.36640 -7.96625 -6.14455 -4.23845 1.94285 2.71157 2.97956 3.20202 3.30221 3.32301 3.73294 3.98549 4.29890 4.45604 4.76858 4.93198 5.08419 5.14776 5.24442 5.45394 5.62063 5.71193 5.92983 5.99382 6.02597 6.08472 6.28101 6.31790 6.46098 6.51979 6.54624 6.69782 6.88091 7.06046 7.24772 7.35997 7.46572 7.74925 7.76091 8.28571 8.36854 8.78573 8.91642 9.44006 10.93245 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022131 B = 0.005033 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.916171 B = 5561.777985 C = 6122.213165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.114 4.114 3 C 0.519 3.481 4 O -0.515 6.515 5 O -0.508 6.508 6 C -0.116 4.116 7 C -0.147 4.147 8 H 0.135 0.865 9 C 0.532 3.468 10 O -0.554 6.554 11 N -0.686 5.686 12 C 0.165 3.835 13 C 0.026 3.974 14 C -0.504 4.504 15 H 0.062 0.938 16 C 0.078 3.922 17 N -0.870 5.870 18 Si 0.888 3.112 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.211 4.211 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.409 0.591 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.406 0.594 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 12.731 3.909 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C 0.362 3.638 4 O -0.403 6.403 5 O -0.319 6.319 6 C -0.154 4.154 7 C -0.169 4.169 8 H 0.152 0.848 9 C 0.317 3.683 10 O -0.434 6.434 11 N -0.334 5.334 12 C 0.042 3.958 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.080 0.920 16 C -0.127 4.127 17 N -0.505 5.505 18 Si 0.715 3.285 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.248 4.248 23 C -0.190 4.190 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.268 0.732 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.243 0.757 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.926 12.230 3.845 12.853 hybrid contribution 1.675 0.034 0.398 1.722 sum 0.750 12.264 4.243 12.999 Atomic orbital electron populations 1.21323 0.88003 1.02616 1.03454 1.20912 0.97661 0.84841 1.08165 1.22211 0.81797 0.85680 0.74155 1.90718 1.23730 1.84096 1.41743 1.84510 1.55478 1.22167 1.69784 1.23220 1.02107 0.97601 0.92466 1.22444 1.01538 0.97000 0.95891 0.84766 1.19281 0.87793 0.81848 0.79421 1.90654 1.14319 1.75740 1.62716 1.45900 1.11576 1.25564 1.50360 1.20881 0.92056 0.87828 0.95066 1.19048 0.96558 0.94805 0.87015 1.20340 0.93110 1.19732 1.21007 0.92015 1.24978 0.95711 0.95570 0.96460 1.69989 1.22306 1.30005 1.28240 0.86608 0.83538 0.79139 0.79172 1.19609 1.20996 1.20907 1.23088 1.01004 1.01928 0.98758 1.22496 0.96003 0.94941 1.05521 0.90877 0.90325 0.92348 0.73207 0.87296 0.86364 0.75742 0.91314 0.94453 0.92858 0.91580 0.90366 0.89918 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 8.05 37.16 0.30 -1.03 16 2 C -0.11 -1.54 2.64 -155.66 -0.41 -1.96 16 3 C 0.52 6.64 7.87 36.00 0.28 6.93 16 4 O -0.51 -7.83 17.02 -18.75 -0.32 -8.15 16 5 O -0.51 -4.85 12.69 -39.27 -0.50 -5.35 16 6 C -0.12 -1.48 9.58 -26.73 -0.26 -1.74 16 7 C -0.15 -2.21 5.70 -91.77 -0.52 -2.73 16 8 H 0.13 1.92 7.67 -51.93 -0.40 1.52 16 9 C 0.53 9.86 7.59 -10.99 -0.08 9.78 16 10 O -0.55 -11.46 13.10 5.55 0.07 -11.39 16 11 N -0.69 -13.53 5.33 -60.30 -0.32 -13.85 16 12 C 0.17 3.64 5.75 -4.05 -0.02 3.62 16 13 C 0.03 0.61 1.70 -155.66 -0.27 0.34 16 14 C -0.50 -12.47 7.44 -34.44 -0.26 -12.73 16 15 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 16 C 0.08 1.99 5.39 -17.82 -0.10 1.89 16 17 N -0.87 -23.40 12.97 55.43 0.72 -22.68 16 18 Si 0.89 19.88 29.55 -169.99 -5.02 14.86 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.21 -4.35 9.88 -26.73 -0.26 -4.62 16 23 C -0.15 -3.40 9.51 -26.73 -0.25 -3.65 16 24 H 0.07 1.11 7.26 -51.93 -0.38 0.73 16 25 H 0.08 1.16 7.01 -51.93 -0.36 0.79 16 26 H 0.06 0.68 7.49 -51.93 -0.39 0.29 16 27 H 0.41 1.96 9.10 45.56 0.41 2.38 16 28 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.12 1.50 8.05 -51.93 -0.42 1.08 16 30 H 0.41 7.69 7.46 -40.82 -0.30 7.39 16 31 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 32 H 0.04 0.80 7.95 -51.93 -0.41 0.39 16 33 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 34 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 37 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -29.82 320.02 -6.73 -36.55 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -4.33 Total: 11.09 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.85 Total: -5.89 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.40 Total: -36.53 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.74 Total: -24.90 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.82 -6.73 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713516584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.723 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds