Wall clock time and date at job start Mon Mar 30 2020 04:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50698 * 115.54966 * 2 1 4 4 O 1.20823 * 120.00078 * 214.32444 * 3 2 1 5 5 O 1.34233 * 119.99646 * 34.05944 * 3 2 1 6 6 C 1.52997 * 117.51297 * 145.70305 * 2 1 3 7 7 C 1.53003 * 117.49457 * 214.33167 * 2 1 3 8 8 H 1.08998 * 117.49419 * 144.99996 * 7 2 1 9 9 C 1.50687 * 117.50064 * 359.97438 * 7 2 1 10 10 O 1.21287 * 120.00450 * 0.02562 * 9 7 2 11 11 N 1.34785 * 120.00047 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00282 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47423 * 181.16706 * 12 11 9 14 14 C 1.50707 * 115.54795 * 39.68083 * 13 12 11 15 15 H 1.08007 * 119.99475 * 264.52874 * 14 13 12 16 16 C 1.37870 * 120.00361 * 84.53037 * 14 13 12 17 17 N 1.31519 * 119.99998 * 352.93236 * 16 14 13 18 18 Si 1.86801 * 120.00355 * 172.92700 * 16 14 13 19 19 H 1.48498 * 109.46949 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47337 * 120.00235 * 18 16 14 21 21 H 1.48499 * 109.47076 * 240.00500 * 18 16 14 22 22 C 1.53001 * 117.49963 * 253.97475 * 13 12 11 23 23 C 1.52995 * 117.50290 * 185.34992 * 13 12 11 24 24 H 1.08996 * 109.46841 * 85.57927 * 1 2 3 25 25 H 1.08994 * 109.47264 * 205.58198 * 1 2 3 26 26 H 1.08995 * 109.46825 * 325.58033 * 1 2 3 27 27 H 0.96703 * 116.99853 * 179.97438 * 5 3 2 28 28 H 1.09000 * 117.49686 * 214.96830 * 6 2 1 29 29 H 1.08999 * 117.50218 * 359.97438 * 6 2 1 30 30 H 0.96995 * 119.99559 * 0.02562 * 11 9 7 31 31 H 1.09006 * 109.46875 * 301.16869 * 12 11 9 32 32 H 1.09001 * 109.47390 * 61.16693 * 12 11 9 33 33 H 0.96995 * 119.99955 * 185.03339 * 17 16 14 34 34 H 1.08992 * 117.49990 * 359.97438 * 22 13 12 35 35 H 1.09004 * 117.49905 * 145.02051 * 22 13 12 36 36 H 1.09006 * 117.50047 * 214.97708 * 23 13 12 37 37 H 1.09003 * 117.49931 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2202 1.5320 -0.5900 5 8 1.6006 2.3805 0.6511 6 6 2.2369 -1.1210 0.7646 7 6 2.2365 -1.1208 -0.7654 8 1 3.1713 -0.8747 -1.2689 9 6 1.3720 -2.1404 -1.4611 10 8 0.1638 -2.0531 -1.4015 11 7 1.9416 -3.1489 -2.1504 12 6 1.1012 -4.1398 -2.8272 13 6 1.9900 -5.1842 -3.5056 14 6 3.2050 -5.6109 -2.7228 15 1 4.1589 -5.1389 -2.9064 16 6 3.0988 -6.6039 -1.7722 17 7 1.9167 -7.0815 -1.4493 18 14 4.6340 -7.2711 -0.9429 19 1 5.8295 -6.5717 -1.4784 20 1 4.5434 -7.0446 0.5219 21 1 4.7493 -8.7268 -1.2125 22 6 2.1167 -5.1216 -5.0291 23 6 1.3028 -6.2396 -4.3744 24 1 -0.3633 0.0792 -1.0246 25 1 -0.3633 -0.9269 0.4437 26 1 -0.3633 0.8477 0.5809 27 1 2.0550 3.2336 0.6231 28 1 3.1721 -0.8751 1.2677 29 1 1.6119 -1.8585 1.2682 30 1 2.9078 -3.2185 -2.1984 31 1 0.4575 -4.6299 -2.0967 32 1 0.4865 -3.6431 -3.5779 33 1 1.8344 -7.7270 -0.7300 34 1 1.5667 -4.3367 -5.5481 35 1 3.0791 -5.3890 -5.4655 36 1 1.7298 -7.2425 -4.3801 37 1 0.2175 -6.1902 -4.4623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713516584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:33 Heat of formation + Delta-G solvation = -102.492158 kcal Electronic energy + Delta-G solvation = -20413.056571 eV Core-core repulsion = 17156.075403 eV Total energy + Delta-G solvation = -3256.981168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.90576 -40.59452 -38.71092 -37.57964 -36.95213 -34.88951 -33.99061 -30.12294 -28.26025 -27.34771 -25.70765 -24.46725 -22.93254 -21.62775 -21.35045 -20.35873 -18.93683 -18.22814 -18.14756 -17.27032 -16.70049 -16.64142 -16.40782 -16.05339 -15.48428 -15.11593 -14.60982 -14.40436 -14.18945 -13.78997 -13.59898 -13.48201 -13.21836 -13.18688 -12.91392 -12.82402 -12.59659 -12.30706 -12.01711 -11.85607 -11.46619 -11.41164 -11.27422 -10.86831 -10.61527 -10.43938 -10.08761 -9.68407 -8.08993 -6.22463 0.94056 1.42453 1.47921 1.55493 1.56301 1.81408 2.42082 2.48337 2.70357 3.19882 3.34628 3.47312 3.64834 3.81920 4.08014 4.21521 4.27570 4.53465 4.58222 4.65962 4.68953 4.75833 4.87571 4.93971 4.96158 5.01037 5.08073 5.27091 5.40187 5.49967 5.52580 5.62622 5.74883 5.79123 6.38657 6.80823 6.87527 6.95747 7.40319 7.47962 8.98698 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022131 B = 0.005033 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.916171 B = 5561.777985 C = 6122.213165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.114 4.114 3 C 0.530 3.470 4 O -0.541 6.541 5 O -0.498 6.498 6 C -0.099 4.099 7 C -0.161 4.161 8 H 0.143 0.857 9 C 0.530 3.470 10 O -0.579 6.579 11 N -0.688 5.688 12 C 0.179 3.821 13 C 0.003 3.997 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.033 3.967 17 N -0.904 5.904 18 Si 0.946 3.054 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.289 1.289 22 C -0.183 4.183 23 C -0.161 4.161 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.433 0.567 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.410 0.590 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.259 0.741 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 14.333 4.417 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.373 3.627 4 O -0.432 6.432 5 O -0.311 6.311 6 C -0.137 4.137 7 C -0.182 4.182 8 H 0.161 0.839 9 C 0.317 3.683 10 O -0.461 6.461 11 N -0.337 5.337 12 C 0.055 3.945 13 C 0.003 3.997 14 C -0.542 4.542 15 H 0.083 0.917 16 C -0.168 4.168 17 N -0.541 5.541 18 Si 0.772 3.228 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.215 1.215 22 C -0.220 4.220 23 C -0.199 4.199 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.295 0.705 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.247 0.753 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.278 13.875 4.359 14.546 hybrid contribution 1.239 -0.395 0.235 1.321 sum 1.516 13.480 4.594 14.321 Atomic orbital electron populations 1.21214 0.88292 1.02788 1.02444 1.20937 0.97456 0.85628 1.07534 1.21881 0.81169 0.85825 0.73821 1.90719 1.24868 1.84529 1.43034 1.84447 1.55216 1.22878 1.68604 1.23354 1.02964 0.96726 0.90628 1.22306 1.01480 0.97165 0.97262 0.83893 1.19855 0.87881 0.81845 0.78705 1.90643 1.15685 1.76367 1.63396 1.45846 1.11500 1.25564 1.50815 1.20539 0.91819 0.87977 0.94179 1.19149 0.96583 0.95514 0.88478 1.20589 0.93704 1.19242 1.20662 0.91743 1.25627 0.97849 0.96007 0.97328 1.70110 1.24112 1.30855 1.28989 0.85694 0.80894 0.78039 0.78135 1.18578 1.21009 1.21513 1.23085 1.00952 1.01006 0.96942 1.22425 0.96515 0.94344 1.06596 0.92783 0.91792 0.90141 0.70488 0.84747 0.86518 0.75266 0.94956 0.94028 0.93214 0.89390 0.89773 0.91883 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.38 8.05 71.99 0.58 -1.80 16 2 C -0.11 -2.88 2.64 -52.93 -0.14 -3.02 16 3 C 0.53 12.22 7.87 71.24 0.56 12.78 16 4 O -0.54 -15.26 17.02 21.97 0.37 -14.88 16 5 O -0.50 -7.89 12.69 -51.45 -0.65 -8.54 16 6 C -0.10 -2.32 9.58 30.60 0.29 -2.03 16 7 C -0.16 -4.64 5.70 -11.54 -0.07 -4.70 16 8 H 0.14 3.88 7.67 -2.39 -0.02 3.86 16 9 C 0.53 19.62 7.59 87.65 0.67 20.29 16 10 O -0.58 -24.29 13.10 -3.05 -0.04 -24.33 16 11 N -0.69 -27.15 5.33 -463.07 -2.47 -29.62 16 12 C 0.18 8.01 5.75 86.38 0.50 8.50 16 13 C 0.00 0.16 1.70 -52.93 -0.09 0.07 16 14 C -0.50 -24.74 7.44 25.60 0.19 -24.55 16 15 H 0.06 3.07 7.82 -2.91 -0.02 3.04 16 16 C 0.03 1.70 5.39 84.65 0.46 2.16 16 17 N -0.90 -49.42 12.97 21.45 0.28 -49.15 16 18 Si 0.95 40.65 29.55 68.60 2.03 42.68 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 22 C -0.18 -7.29 9.88 30.59 0.30 -6.98 16 23 C -0.16 -7.22 9.51 30.59 0.29 -6.93 16 24 H 0.05 1.62 7.26 -2.39 -0.02 1.60 16 25 H 0.06 1.86 7.01 -2.39 -0.02 1.84 16 26 H 0.08 1.72 7.49 -2.39 -0.02 1.70 16 27 H 0.43 2.63 9.10 -74.06 -0.67 1.96 16 28 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.12 2.79 8.05 -2.39 -0.02 2.77 16 30 H 0.41 15.36 7.46 -92.71 -0.69 14.67 16 31 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.04 1.79 7.95 -2.39 -0.02 1.77 16 33 H 0.26 13.68 8.32 -92.71 -0.77 12.91 16 34 H 0.09 3.12 8.08 -2.39 -0.02 3.11 16 35 H 0.08 3.25 8.14 -2.38 -0.02 3.24 16 36 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 37 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -63.55 320.02 2.79 -60.76 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -0.26 Total: 29.29 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 3.54 Total: -6.21 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.19 Total: -78.77 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -0.32 Total: -47.75 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -63.55 2.79 -60.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713516584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.734 kcal (2) G-P(sol) polarization free energy of solvation -63.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds