Wall clock time and date at job start Mon Mar 30 2020 04:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 115.54938 * 2 1 4 4 O 1.20833 * 119.99655 * 145.58184 * 3 2 1 5 5 O 1.34222 * 120.00432 * 325.86452 * 3 2 1 6 6 C 1.53004 * 117.49766 * 214.33819 * 2 1 3 7 7 C 1.53001 * 117.49945 * 145.68035 * 2 1 3 8 8 H 1.08997 * 117.49603 * 215.00594 * 7 2 1 9 9 C 1.50702 * 117.49808 * 0.02562 * 7 2 1 10 10 O 1.21278 * 119.99789 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99999 * 180.02562 * 9 7 2 12 12 C 1.46491 * 120.00164 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47149 * 89.99855 * 12 11 9 14 14 H 1.07990 * 120.00071 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99833 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00121 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99924 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46879 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47282 * 120.00191 * 17 15 13 20 20 H 1.48498 * 109.46926 * 240.00023 * 17 15 13 21 21 C 1.46501 * 119.99728 * 0.02562 * 11 9 7 22 22 C 1.53000 * 117.49638 * 188.62253 * 21 11 9 23 23 C 1.52998 * 60.00022 * 252.50647 * 22 21 11 24 24 H 1.08999 * 109.47507 * 34.41429 * 1 2 3 25 25 H 1.09002 * 109.47584 * 154.41176 * 1 2 3 26 26 H 1.09001 * 109.47159 * 274.41202 * 1 2 3 27 27 H 0.96701 * 117.00458 * 179.72178 * 5 3 2 28 28 H 1.08997 * 117.49971 * 359.97394 * 6 2 1 29 29 H 1.09000 * 117.49959 * 144.99740 * 6 2 1 30 30 H 1.09005 * 109.47609 * 210.00125 * 12 11 9 31 31 H 1.09002 * 109.47365 * 330.00307 * 12 11 9 32 32 H 0.97010 * 120.00036 * 179.97438 * 16 15 13 33 33 H 1.09007 * 115.55431 * 334.32685 * 21 11 9 34 34 H 1.08999 * 117.50064 * 359.97438 * 22 21 11 35 35 H 1.09003 * 117.50254 * 145.02107 * 22 21 11 36 36 H 1.08995 * 117.50337 * 252.50651 * 23 22 21 37 37 H 1.09008 * 117.49790 * 107.48570 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 3.2193 1.5323 0.5915 5 8 1.6014 2.3801 -0.6523 6 6 2.2364 -1.1207 -0.7656 7 6 2.2364 -1.1209 0.7652 8 1 3.1713 -0.8748 1.2687 9 6 1.3720 -2.1407 1.4607 10 8 0.1638 -2.0539 1.4002 11 7 1.9415 -3.1493 2.1498 12 6 1.1013 -4.1410 2.8254 13 6 0.8148 -5.2820 1.8834 14 1 1.2186 -5.2698 0.8819 15 6 0.0380 -6.3419 2.3007 16 7 -0.4534 -6.3570 3.5205 17 14 -0.3166 -7.7566 1.1334 18 1 0.3474 -7.5010 -0.1700 19 1 0.2041 -9.0201 1.7143 20 1 -1.7827 -7.8734 0.9283 21 6 3.4010 -3.2538 2.2231 22 6 3.9880 -4.5231 2.8439 23 6 4.0443 -3.2001 3.6103 24 1 -0.3634 0.8478 -0.5808 25 1 -0.3634 -0.9269 -0.4438 26 1 -0.3633 0.0791 1.0246 27 1 2.0535 3.2343 -0.6204 28 1 1.6112 -1.8581 -1.2688 29 1 3.1713 -0.8745 -1.2691 30 1 1.6212 -4.5186 3.7059 31 1 0.1632 -3.6762 3.1289 32 1 -1.0002 -7.1026 3.8140 33 1 3.9471 -2.7981 1.3971 34 1 3.2883 -5.2801 3.1980 35 1 4.9205 -4.9028 2.4262 36 1 5.0137 -2.7094 3.6969 37 1 3.3815 -3.0869 4.4683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713633393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:58 Heat of formation + Delta-G solvation = -69.069307 kcal Electronic energy + Delta-G solvation = -20790.684782 eV Core-core repulsion = 17535.152938 eV Total energy + Delta-G solvation = -3255.531844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80294 -39.38057 -37.39510 -36.34705 -35.75746 -33.22971 -32.02121 -28.99377 -27.50741 -24.82506 -24.00676 -22.62566 -21.92411 -21.48391 -20.16923 -17.99883 -17.96519 -17.21903 -16.44292 -16.25853 -15.68192 -15.21692 -14.61002 -14.36676 -13.93485 -13.87828 -13.54880 -12.87315 -12.61208 -12.35001 -12.21484 -12.11437 -11.72955 -11.55676 -11.43762 -11.02907 -10.88857 -10.72706 -10.61156 -10.52325 -10.26976 -10.16553 -10.12595 -9.96650 -9.51166 -8.81571 -8.46047 -7.56116 -6.06491 -4.11009 1.97323 2.75927 3.03192 3.28302 3.36218 3.39829 3.71977 3.91061 4.37117 4.44635 4.51139 4.76986 4.86088 5.07700 5.22316 5.28340 5.31354 5.36948 5.49163 5.57292 5.75951 5.95101 6.02909 6.06649 6.15184 6.18071 6.34515 6.44491 6.65261 6.74027 7.02098 7.40057 7.49774 7.79130 7.89746 8.19996 8.36201 8.86589 9.03041 9.53994 11.01411 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.005579 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.126857 B = 5017.481362 C = 5719.017140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.114 4.114 3 C 0.520 3.480 4 O -0.516 6.516 5 O -0.508 6.508 6 C -0.119 4.119 7 C -0.148 4.148 8 H 0.133 0.867 9 C 0.539 3.461 10 O -0.529 6.529 11 N -0.563 5.563 12 C 0.244 3.756 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.074 3.926 22 C -0.173 4.173 23 C -0.203 4.203 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.409 0.591 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 11.899 -6.479 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.363 3.637 4 O -0.405 6.405 5 O -0.319 6.319 6 C -0.157 4.157 7 C -0.170 4.170 8 H 0.151 0.849 9 C 0.325 3.675 10 O -0.407 6.407 11 N -0.292 5.292 12 C 0.125 3.875 13 C -0.559 4.559 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.032 4.032 22 C -0.211 4.211 23 C -0.242 4.242 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.267 0.733 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.322 11.475 -6.219 14.965 hybrid contribution 0.309 -0.266 -0.432 0.594 sum 7.631 11.209 -6.652 15.103 Atomic orbital electron populations 1.21342 0.87932 1.02697 1.03594 1.20913 0.97744 0.84777 1.08117 1.22226 0.81738 0.85695 0.74082 1.90707 1.23845 1.84138 1.41776 1.84515 1.55689 1.22061 1.69607 1.23225 1.02035 0.97871 0.92522 1.22573 1.01581 0.97175 0.95636 0.84927 1.19089 0.87621 0.81265 0.79489 1.90687 1.14103 1.74830 1.61058 1.47663 1.04611 1.26525 1.50400 1.19341 0.90100 0.85599 0.92436 1.21415 1.31528 1.03604 0.99367 0.92322 1.24923 0.95506 0.98381 0.95265 1.69943 1.34620 1.31854 1.16975 0.86457 0.78152 0.81890 0.81016 1.19798 1.21004 1.20927 1.21532 0.82284 1.03476 0.95939 1.23339 1.02537 0.92133 1.03089 1.23396 1.02063 1.02069 0.96629 0.92378 0.90169 0.90789 0.73264 0.86365 0.87481 0.94654 0.93754 0.92770 0.86489 0.86333 0.88911 0.88929 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 8.05 37.16 0.30 -1.17 16 2 C -0.11 -1.63 2.64 -155.66 -0.41 -2.04 16 3 C 0.52 6.86 7.87 36.00 0.28 7.14 16 4 O -0.52 -7.93 17.02 -18.76 -0.32 -8.25 16 5 O -0.51 -5.05 12.69 -39.24 -0.50 -5.55 16 6 C -0.12 -1.55 9.59 -26.69 -0.26 -1.80 16 7 C -0.15 -2.33 4.45 -91.73 -0.41 -2.74 16 8 H 0.13 1.97 6.73 -51.93 -0.35 1.62 16 9 C 0.54 10.99 7.44 -10.99 -0.08 10.91 16 10 O -0.53 -12.44 12.68 5.56 0.07 -12.37 16 11 N -0.56 -11.83 2.79 -167.47 -0.47 -12.30 16 12 C 0.24 6.21 4.46 -5.20 -0.02 6.19 16 13 C -0.52 -14.28 9.19 -34.44 -0.32 -14.59 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.07 1.24 5.79 -67.93 -0.39 0.85 16 22 C -0.17 -2.84 9.72 -26.73 -0.26 -3.10 16 23 C -0.20 -3.06 10.13 -26.73 -0.27 -3.33 16 24 H 0.06 0.74 7.49 -51.93 -0.39 0.35 16 25 H 0.08 1.30 7.01 -51.93 -0.36 0.94 16 26 H 0.07 1.24 7.27 -51.93 -0.38 0.86 16 27 H 0.41 2.08 9.10 45.56 0.41 2.50 16 28 H 0.12 1.57 8.05 -51.93 -0.42 1.15 16 29 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.91 6.33 -51.93 -0.33 0.59 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.12 1.67 6.86 -51.93 -0.36 1.31 16 34 H 0.12 2.35 6.29 -51.93 -0.33 2.02 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.56 8.12 -51.92 -0.42 1.14 16 LS Contribution 315.33 15.07 4.75 4.75 Total: -1.00 -32.84 315.33 -6.80 -39.64 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.11 Total: 5.04 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.94 Total: -2.08 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.27 Total: -37.63 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.75 Total: -26.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.84 -6.80 -39.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713633393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.429 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds