Wall clock time and date at job start Mon Mar 30 2020 04:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 115.54938 * 2 1 4 4 O 1.20833 * 119.99655 * 145.58184 * 3 2 1 5 5 O 1.34222 * 120.00432 * 325.86452 * 3 2 1 6 6 C 1.53004 * 117.49766 * 214.33819 * 2 1 3 7 7 C 1.53001 * 117.49945 * 145.68035 * 2 1 3 8 8 H 1.08997 * 117.49603 * 215.00594 * 7 2 1 9 9 C 1.50702 * 117.49808 * 0.02562 * 7 2 1 10 10 O 1.21278 * 119.99789 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99999 * 180.02562 * 9 7 2 12 12 C 1.46491 * 120.00164 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47149 * 89.99855 * 12 11 9 14 14 H 1.07990 * 120.00071 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99833 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00121 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99924 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46879 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47282 * 120.00191 * 17 15 13 20 20 H 1.48498 * 109.46926 * 240.00023 * 17 15 13 21 21 C 1.46501 * 119.99728 * 0.02562 * 11 9 7 22 22 C 1.53000 * 117.49638 * 188.62253 * 21 11 9 23 23 C 1.52998 * 60.00022 * 252.50647 * 22 21 11 24 24 H 1.08999 * 109.47507 * 34.41429 * 1 2 3 25 25 H 1.09002 * 109.47584 * 154.41176 * 1 2 3 26 26 H 1.09001 * 109.47159 * 274.41202 * 1 2 3 27 27 H 0.96701 * 117.00458 * 179.72178 * 5 3 2 28 28 H 1.08997 * 117.49971 * 359.97394 * 6 2 1 29 29 H 1.09000 * 117.49959 * 144.99740 * 6 2 1 30 30 H 1.09005 * 109.47609 * 210.00125 * 12 11 9 31 31 H 1.09002 * 109.47365 * 330.00307 * 12 11 9 32 32 H 0.97010 * 120.00036 * 179.97438 * 16 15 13 33 33 H 1.09007 * 115.55431 * 334.32685 * 21 11 9 34 34 H 1.08999 * 117.50064 * 359.97438 * 22 21 11 35 35 H 1.09003 * 117.50254 * 145.02107 * 22 21 11 36 36 H 1.08995 * 117.50337 * 252.50651 * 23 22 21 37 37 H 1.09008 * 117.49790 * 107.48570 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 3.2193 1.5323 0.5915 5 8 1.6014 2.3801 -0.6523 6 6 2.2364 -1.1207 -0.7656 7 6 2.2364 -1.1209 0.7652 8 1 3.1713 -0.8748 1.2687 9 6 1.3720 -2.1407 1.4607 10 8 0.1638 -2.0539 1.4002 11 7 1.9415 -3.1493 2.1498 12 6 1.1013 -4.1410 2.8254 13 6 0.8148 -5.2820 1.8834 14 1 1.2186 -5.2698 0.8819 15 6 0.0380 -6.3419 2.3007 16 7 -0.4534 -6.3570 3.5205 17 14 -0.3166 -7.7566 1.1334 18 1 0.3474 -7.5010 -0.1700 19 1 0.2041 -9.0201 1.7143 20 1 -1.7827 -7.8734 0.9283 21 6 3.4010 -3.2538 2.2231 22 6 3.9880 -4.5231 2.8439 23 6 4.0443 -3.2001 3.6103 24 1 -0.3634 0.8478 -0.5808 25 1 -0.3634 -0.9269 -0.4438 26 1 -0.3633 0.0791 1.0246 27 1 2.0535 3.2343 -0.6204 28 1 1.6112 -1.8581 -1.2688 29 1 3.1713 -0.8745 -1.2691 30 1 1.6212 -4.5186 3.7059 31 1 0.1632 -3.6762 3.1289 32 1 -1.0002 -7.1026 3.8140 33 1 3.9471 -2.7981 1.3971 34 1 3.2883 -5.2801 3.1980 35 1 4.9205 -4.9028 2.4262 36 1 5.0137 -2.7094 3.6969 37 1 3.3815 -3.0869 4.4683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713633393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:57 Heat of formation + Delta-G solvation = -90.911224 kcal Electronic energy + Delta-G solvation = -20791.631918 eV Core-core repulsion = 17535.152938 eV Total energy + Delta-G solvation = -3256.478981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94478 -40.74789 -38.71465 -37.51861 -36.92322 -35.19785 -33.79231 -30.44802 -29.23968 -26.23530 -25.38636 -24.23080 -23.20533 -22.88504 -21.30120 -19.50027 -18.95028 -18.56246 -18.49822 -17.52863 -16.94831 -16.66229 -16.14490 -16.02805 -15.39753 -15.18712 -14.83443 -14.40724 -14.03220 -13.84838 -13.46080 -13.37656 -13.24844 -13.15190 -12.75737 -12.65680 -12.57955 -12.23070 -12.19961 -12.07562 -11.85314 -11.47795 -11.45360 -11.34416 -11.15662 -10.63693 -10.41653 -9.25197 -8.20501 -6.34658 0.94889 1.37445 1.39260 1.50804 1.55407 1.80394 2.27697 2.43189 2.64977 3.08994 3.09308 3.34468 3.50388 3.70974 3.91592 3.99795 4.07922 4.21438 4.22209 4.56002 4.65612 4.81946 4.85194 4.90819 4.92343 4.94925 5.03629 5.13242 5.26288 5.40414 5.41124 5.52981 5.57974 5.82840 6.06619 6.69580 6.77579 6.97039 7.28239 7.44188 8.86483 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.005579 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.126857 B = 5017.481362 C = 5719.017140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.119 4.119 3 C 0.532 3.468 4 O -0.538 6.538 5 O -0.498 6.498 6 C -0.093 4.093 7 C -0.157 4.157 8 H 0.148 0.852 9 C 0.530 3.470 10 O -0.574 6.574 11 N -0.573 5.573 12 C 0.263 3.737 13 C -0.528 4.528 14 H 0.054 0.946 15 C 0.008 3.992 16 N -0.930 5.930 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.283 1.283 21 C 0.057 3.943 22 C -0.178 4.178 23 C -0.184 4.184 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.433 0.567 28 H 0.113 0.887 29 H 0.143 0.857 30 H 0.024 0.976 31 H -0.004 1.004 32 H 0.266 0.734 33 H 0.154 0.846 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.258 12.753 -8.580 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.375 3.625 4 O -0.429 6.429 5 O -0.312 6.312 6 C -0.130 4.130 7 C -0.178 4.178 8 H 0.166 0.834 9 C 0.318 3.682 10 O -0.454 6.454 11 N -0.301 5.301 12 C 0.142 3.858 13 C -0.567 4.567 14 H 0.072 0.928 15 C -0.190 4.190 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.209 1.209 21 C -0.047 4.047 22 C -0.215 4.215 23 C -0.222 4.222 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.295 0.705 28 H 0.132 0.868 29 H 0.161 0.839 30 H 0.042 0.958 31 H 0.014 0.986 32 H 0.075 0.925 33 H 0.171 0.829 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.588 12.366 -8.332 17.728 hybrid contribution -0.432 -0.454 0.252 0.675 sum 9.156 11.912 -8.081 17.060 Atomic orbital electron populations 1.21193 0.88942 1.02656 1.02071 1.20927 0.97131 0.86004 1.08004 1.21785 0.81148 0.85678 0.73843 1.90709 1.24805 1.84483 1.42868 1.84448 1.55477 1.22813 1.68465 1.23384 1.03055 0.96353 0.90215 1.22350 1.01328 0.96863 0.97264 0.83406 1.19932 0.87740 0.81590 0.78904 1.90662 1.16318 1.75949 1.62503 1.47637 1.06375 1.25899 1.50199 1.18732 0.88831 0.85874 0.92335 1.21611 1.31543 1.04293 0.99249 0.92772 1.25815 0.95201 1.01141 0.96867 1.70066 1.35307 1.32860 1.18808 0.85390 0.77796 0.78716 0.79058 1.18913 1.19731 1.20902 1.22005 0.79882 1.04490 0.98300 1.23297 1.02977 0.91491 1.03772 1.23437 1.03074 1.01030 0.94702 0.89995 0.92121 0.93477 0.70462 0.86839 0.83866 0.95807 0.98587 0.92529 0.82876 0.90559 0.85438 0.84833 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.73 8.05 71.98 0.58 -2.15 16 2 C -0.12 -3.19 2.64 -52.93 -0.14 -3.33 16 3 C 0.53 12.51 7.87 71.23 0.56 13.07 16 4 O -0.54 -14.94 17.02 21.94 0.37 -14.56 16 5 O -0.50 -8.22 12.69 -51.34 -0.65 -8.88 16 6 C -0.09 -2.15 9.59 30.62 0.29 -1.86 16 7 C -0.16 -4.71 4.45 -11.51 -0.05 -4.76 16 8 H 0.15 4.00 6.73 -2.39 -0.02 3.98 16 9 C 0.53 22.09 7.44 87.66 0.65 22.74 16 10 O -0.57 -28.46 12.68 -3.02 -0.04 -28.50 16 11 N -0.57 -24.70 2.79 -802.14 -2.24 -26.94 16 12 C 0.26 14.20 4.46 85.64 0.38 14.58 16 13 C -0.53 -30.01 9.19 25.60 0.24 -29.77 16 14 H 0.05 3.06 7.81 -2.92 -0.02 3.03 16 15 C 0.01 0.48 5.46 84.65 0.46 0.94 16 16 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 17 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 C 0.06 1.86 5.79 44.99 0.26 2.12 16 22 C -0.18 -5.66 9.72 30.59 0.30 -5.36 16 23 C -0.18 -5.26 10.13 30.59 0.31 -4.95 16 24 H 0.08 1.98 7.49 -2.39 -0.02 1.96 16 25 H 0.06 2.02 7.01 -2.39 -0.02 2.01 16 26 H 0.05 1.64 7.27 -2.39 -0.02 1.62 16 27 H 0.43 2.78 9.10 -74.06 -0.67 2.11 16 28 H 0.11 2.79 8.05 -2.39 -0.02 2.77 16 29 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.02 1.32 6.33 -2.38 -0.02 1.31 16 31 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 32 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 33 H 0.15 3.84 6.86 -2.38 -0.02 3.82 16 34 H 0.08 3.12 6.29 -2.39 -0.02 3.11 16 35 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.07 2.40 8.12 -2.38 -0.02 2.38 16 Total: -1.00 -75.23 315.33 4.02 -71.21 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.42 Total: 15.62 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 3.84 Total: 1.29 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.96 Total: -82.81 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.32 Total: -51.94 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.23 4.02 -71.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713633393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.698 kcal (2) G-P(sol) polarization free energy of solvation -75.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds