Wall clock time and date at job start Mon Mar 30 2020 05:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99607 * 2 1 4 4 H 1.48503 * 109.47161 * 270.00463 * 3 2 1 5 5 H 1.48509 * 109.47279 * 29.99857 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.00224 * 3 2 1 7 7 C 1.37871 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99702 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47600 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47407 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47350 * 54.99837 * 11 10 9 13 13 N 1.46896 * 109.47214 * 295.00007 * 11 10 9 14 14 C 1.50702 * 109.46942 * 174.99725 * 11 10 9 15 15 O 1.21288 * 119.99529 * 100.00128 * 14 11 10 16 16 N 1.34772 * 120.00352 * 279.99765 * 14 11 10 17 17 C 1.46498 * 119.99999 * 180.02562 * 16 14 11 18 18 C 1.53002 * 109.46969 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.46941 * 179.97438 * 18 17 16 20 20 C 1.41385 * 128.00459 * 90.00093 * 19 18 17 21 21 N 1.30179 * 106.39389 * 179.97438 * 20 19 18 22 22 O 1.20927 * 111.60367 * 359.97438 * 21 20 19 23 23 C 1.34037 * 111.56699 * 359.97438 * 22 21 20 24 24 H 0.96995 * 120.00385 * 359.97438 * 1 2 3 25 25 H 1.09012 * 109.46968 * 60.00046 * 9 7 2 26 26 H 1.08999 * 109.47649 * 300.00341 * 9 7 2 27 27 H 1.08998 * 109.46770 * 59.99921 * 10 9 7 28 28 H 1.09007 * 109.46609 * 300.00539 * 10 9 7 29 29 H 1.00903 * 110.99692 * 300.00491 * 13 11 10 30 30 H 1.00907 * 111.00205 * 63.95103 * 13 11 10 31 31 H 0.96999 * 120.00019 * 0.02562 * 16 14 11 32 32 H 1.08994 * 109.47319 * 59.99795 * 17 16 14 33 33 H 1.09005 * 109.47165 * 299.99730 * 17 16 14 34 34 H 1.08997 * 109.47643 * 60.00125 * 18 17 16 35 35 H 1.08998 * 109.46977 * 299.99512 * 18 17 16 36 36 H 1.07993 * 126.80227 * 359.70041 * 20 19 18 37 37 H 1.08002 * 126.77549 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 1 0.7887 -5.0068 -0.8432 13 7 0.7285 -5.1189 1.2537 14 6 2.4554 -6.1297 -0.1251 15 8 2.7869 -6.7535 0.8608 16 7 2.9586 -6.4584 -1.3313 17 6 3.9058 -7.5695 -1.4518 18 6 4.3195 -7.7305 -2.9160 19 6 5.2943 -8.8731 -3.0397 20 6 5.0103 -10.2383 -3.2731 21 7 6.1578 -10.8524 -3.3034 22 8 7.0772 -10.0867 -3.1285 23 6 6.6455 -8.8296 -2.9552 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6249 -2.5572 0.8896 27 1 2.8721 -3.6042 0.8894 28 1 2.8722 -3.6041 -0.8906 29 1 1.3480 -5.1033 2.0499 30 1 0.0236 -4.4009 1.3300 31 1 2.6937 -5.9593 -2.1197 32 1 3.4340 -8.4884 -1.1040 33 1 4.7880 -7.3622 -0.8460 34 1 4.7915 -6.8115 -3.2634 35 1 3.4376 -7.9376 -3.5220 36 1 4.0345 -10.6841 -3.3969 37 1 7.2547 -7.9549 -2.7817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719315688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:52 Heat of formation + Delta-G solvation = 4.900214 kcal Electronic energy + Delta-G solvation = -19311.177356 eV Core-core repulsion = 16091.145822 eV Total energy + Delta-G solvation = -3220.031534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.26480 -39.66053 -36.44371 -35.41580 -34.15381 -32.87792 -32.41167 -29.97179 -29.80325 -26.64663 -24.67067 -23.37334 -22.97331 -21.45659 -20.74801 -19.79827 -18.21462 -17.84208 -17.31002 -16.29458 -16.10752 -15.61457 -15.15435 -14.74580 -14.47509 -14.16644 -14.05631 -13.44722 -13.33566 -13.02091 -12.83660 -12.51136 -12.20844 -12.02385 -11.70156 -11.35284 -11.10833 -10.95825 -10.71444 -10.62378 -10.02437 -9.96653 -9.77602 -9.32233 -9.23805 -9.05148 -8.47078 -8.21457 -6.11560 -4.14910 1.15512 1.88881 2.88892 2.90229 3.24486 3.24855 3.31728 3.34824 3.97696 4.32264 4.36653 4.50550 4.68625 4.82068 5.06759 5.09515 5.15475 5.17987 5.24735 5.32582 5.54793 5.65552 5.70742 5.74091 5.78687 6.24702 6.43984 6.48951 6.83937 7.39528 7.48505 7.57728 7.66041 7.85350 7.88290 7.90292 8.27796 8.42551 8.91158 9.50234 10.99345 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026927 B = 0.003066 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.586895 B = 9130.382546 C = 9835.387581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.538 6.538 16 N -0.737 5.737 17 C 0.126 3.874 18 C -0.055 4.055 19 C -0.198 4.198 20 C -0.004 4.004 21 N -0.367 5.367 22 O 0.097 5.903 23 C -0.052 4.052 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.345 0.655 30 H 0.354 0.646 31 H 0.402 0.598 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.191 0.809 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 -15.141 -7.932 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.312 3.688 15 O -0.413 6.413 16 N -0.390 5.390 17 C 0.002 3.998 18 C -0.093 4.093 19 C -0.202 4.202 20 C -0.183 4.183 21 N -0.070 5.070 22 O 0.032 5.968 23 C -0.133 4.133 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.237 0.763 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.208 0.792 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.015 -17.490 -7.651 21.112 hybrid contribution 0.215 2.952 -0.151 2.963 sum 9.231 -14.539 -7.802 18.906 Atomic orbital electron populations 1.69946 1.06028 1.26825 1.50402 1.25014 0.94870 0.99323 0.95110 0.86583 0.79867 0.83353 0.78149 1.20604 1.21140 1.19877 1.21178 0.93018 0.90903 1.51168 0.92716 1.19106 0.93726 0.91110 0.97379 1.22380 0.99868 0.93953 1.01478 1.21479 0.94665 0.92262 0.95654 0.88533 1.58746 1.18472 1.55904 1.03220 1.20915 0.81044 0.84432 0.82382 1.90644 1.60163 1.53393 1.37134 1.45969 1.47394 1.35330 1.10353 1.21222 0.93177 0.90314 0.95124 1.20079 0.97400 0.95037 0.96811 1.21221 0.94531 0.95887 1.08598 1.25050 0.98650 0.91658 1.02934 1.73900 0.97029 1.17821 1.18252 1.84830 1.31558 1.14972 1.65473 1.25931 0.95354 0.89381 1.02674 0.92850 0.96313 0.96395 0.92686 0.92535 0.84130 0.83019 0.76328 0.91488 0.91522 0.89440 0.89480 0.79236 0.76550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.11 9.11 -34.45 -0.31 -14.42 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.56 4.74 -27.89 -0.13 0.43 16 10 C -0.14 -2.58 4.78 -26.73 -0.13 -2.71 16 11 C 0.07 1.22 3.21 -68.87 -0.22 1.00 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 N -0.83 -14.08 8.94 -5.66 -0.05 -14.13 16 14 C 0.53 8.30 7.08 -10.99 -0.08 8.22 16 15 O -0.54 -10.32 16.25 5.55 0.09 -10.23 16 16 N -0.74 -8.46 5.56 -60.29 -0.33 -8.80 16 17 C 0.13 1.24 5.66 -4.04 -0.02 1.21 16 18 C -0.06 -0.36 5.91 -27.88 -0.16 -0.53 16 19 C -0.20 -1.49 5.58 -104.42 -0.58 -2.08 16 20 C 0.00 -0.03 12.16 -17.06 -0.21 -0.24 16 21 N -0.37 -3.86 12.07 30.36 0.37 -3.50 16 22 O 0.10 0.89 11.20 17.18 0.19 1.09 16 23 C -0.05 -0.35 12.26 29.74 0.36 0.01 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.35 5.96 8.58 -39.29 -0.34 5.62 16 30 H 0.35 6.00 7.55 -39.29 -0.30 5.71 16 31 H 0.40 3.65 8.47 -40.82 -0.35 3.31 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.19 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.22 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -33.06 322.88 -5.84 -38.90 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.11 Total: 8.43 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.58 Total: -7.58 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.72 Total: -51.37 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.28 Total: -9.15 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.06 -5.84 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719315688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.801 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds