Wall clock time and date at job start Mon Mar 30 2020 05:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99607 * 2 1 4 4 H 1.48503 * 109.47161 * 270.00463 * 3 2 1 5 5 H 1.48509 * 109.47279 * 29.99857 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.00224 * 3 2 1 7 7 C 1.37871 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99702 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47600 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47407 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47350 * 54.99837 * 11 10 9 13 13 N 1.46896 * 109.47214 * 295.00007 * 11 10 9 14 14 C 1.50702 * 109.46942 * 174.99725 * 11 10 9 15 15 O 1.21288 * 119.99529 * 100.00128 * 14 11 10 16 16 N 1.34772 * 120.00352 * 279.99765 * 14 11 10 17 17 C 1.46498 * 119.99999 * 180.02562 * 16 14 11 18 18 C 1.53002 * 109.46969 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.46941 * 179.97438 * 18 17 16 20 20 C 1.41385 * 128.00459 * 90.00093 * 19 18 17 21 21 N 1.30179 * 106.39389 * 179.97438 * 20 19 18 22 22 O 1.20927 * 111.60367 * 359.97438 * 21 20 19 23 23 C 1.34037 * 111.56699 * 359.97438 * 22 21 20 24 24 H 0.96995 * 120.00385 * 359.97438 * 1 2 3 25 25 H 1.09012 * 109.46968 * 60.00046 * 9 7 2 26 26 H 1.08999 * 109.47649 * 300.00341 * 9 7 2 27 27 H 1.08998 * 109.46770 * 59.99921 * 10 9 7 28 28 H 1.09007 * 109.46609 * 300.00539 * 10 9 7 29 29 H 1.00903 * 110.99692 * 300.00491 * 13 11 10 30 30 H 1.00907 * 111.00205 * 63.95103 * 13 11 10 31 31 H 0.96999 * 120.00019 * 0.02562 * 16 14 11 32 32 H 1.08994 * 109.47319 * 59.99795 * 17 16 14 33 33 H 1.09005 * 109.47165 * 299.99730 * 17 16 14 34 34 H 1.08997 * 109.47643 * 60.00125 * 18 17 16 35 35 H 1.08998 * 109.46977 * 299.99512 * 18 17 16 36 36 H 1.07993 * 126.80227 * 359.70041 * 20 19 18 37 37 H 1.08002 * 126.77549 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 1 0.7887 -5.0068 -0.8432 13 7 0.7285 -5.1189 1.2537 14 6 2.4554 -6.1297 -0.1251 15 8 2.7869 -6.7535 0.8608 16 7 2.9586 -6.4584 -1.3313 17 6 3.9058 -7.5695 -1.4518 18 6 4.3195 -7.7305 -2.9160 19 6 5.2943 -8.8731 -3.0397 20 6 5.0103 -10.2383 -3.2731 21 7 6.1578 -10.8524 -3.3034 22 8 7.0772 -10.0867 -3.1285 23 6 6.6455 -8.8296 -2.9552 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6249 -2.5572 0.8896 27 1 2.8721 -3.6042 0.8894 28 1 2.8722 -3.6041 -0.8906 29 1 1.3480 -5.1033 2.0499 30 1 0.0236 -4.4009 1.3300 31 1 2.6937 -5.9593 -2.1197 32 1 3.4340 -8.4884 -1.1040 33 1 4.7880 -7.3622 -0.8460 34 1 4.7915 -6.8115 -3.2634 35 1 3.4376 -7.9376 -3.5220 36 1 4.0345 -10.6841 -3.3969 37 1 7.2547 -7.9549 -2.7817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719315688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:51 Heat of formation + Delta-G solvation = -20.014291 kcal Electronic energy + Delta-G solvation = -19312.257730 eV Core-core repulsion = 16091.145822 eV Total energy + Delta-G solvation = -3221.111908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.89521 -40.89131 -37.41226 -36.78371 -35.00551 -34.81144 -33.09738 -31.66084 -30.64505 -28.12624 -26.06203 -24.45339 -23.72914 -22.33133 -22.11413 -21.03853 -18.97207 -18.67612 -18.48922 -18.03226 -17.18949 -16.57949 -16.41911 -15.98939 -15.81658 -15.43440 -15.21926 -14.60984 -14.58714 -14.08238 -13.90226 -13.72741 -13.43400 -13.20040 -12.92112 -12.74249 -12.60539 -12.51243 -11.97014 -11.77336 -11.69746 -11.28337 -11.27017 -10.75759 -10.54230 -10.34867 -10.09075 -9.61928 -8.19935 -6.30127 0.59123 1.27384 1.40997 1.42223 1.52381 1.64231 2.15305 2.41369 2.46405 3.14036 3.40703 3.76728 3.78626 3.82104 4.01849 4.08484 4.16709 4.25426 4.30069 4.41179 4.60880 4.70411 4.80912 4.87083 4.99794 5.09267 5.12584 5.20810 5.46005 5.49397 5.68607 5.83133 6.10012 6.23240 6.48908 6.57536 6.86069 7.27353 7.31055 7.39205 8.90822 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026927 B = 0.003066 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.586895 B = 9130.382546 C = 9835.387581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.112 0.888 13 N -0.833 5.833 14 C 0.526 3.474 15 O -0.576 6.576 16 N -0.717 5.717 17 C 0.126 3.874 18 C -0.041 4.041 19 C -0.210 4.210 20 C -0.010 4.010 21 N -0.403 5.403 22 O 0.081 5.919 23 C -0.041 4.041 24 H 0.263 0.737 25 H 0.004 0.996 26 H 0.000 1.000 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.343 0.657 30 H 0.352 0.648 31 H 0.417 0.583 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.206 0.794 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.812 -14.640 -9.095 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.036 4.036 12 H 0.130 0.870 13 N -0.364 5.364 14 C 0.312 3.688 15 O -0.455 6.455 16 N -0.370 5.370 17 C 0.003 3.997 18 C -0.079 4.079 19 C -0.214 4.214 20 C -0.188 4.188 21 N -0.109 5.109 22 O 0.019 5.981 23 C -0.123 4.123 24 H 0.072 0.928 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.254 0.746 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.223 0.777 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 10.069 -16.992 -8.862 21.648 hybrid contribution -0.113 2.779 0.201 2.789 sum 9.956 -14.213 -8.661 19.394 Atomic orbital electron populations 1.70060 1.07516 1.27735 1.51476 1.25863 0.95704 1.02983 0.94823 0.85549 0.78627 0.78977 0.78510 1.19620 1.21053 1.19184 1.21640 0.93416 0.92446 1.50666 0.92567 1.18980 0.94090 0.92050 0.95721 1.22126 0.98739 0.93555 1.01560 1.21443 0.94832 0.91371 0.95914 0.87007 1.58768 1.18462 1.55666 1.03507 1.20724 0.80876 0.84058 0.83119 1.90634 1.61462 1.54692 1.38674 1.45821 1.46445 1.35255 1.09507 1.21304 0.92125 0.88909 0.97405 1.19992 0.97930 0.95517 0.94435 1.21353 0.95051 0.95657 1.09366 1.25475 0.98937 0.92387 1.02004 1.73899 0.97817 1.19004 1.20171 1.84793 1.31593 1.15874 1.65796 1.26642 0.95744 0.89333 1.00533 0.92778 0.97801 0.98153 0.93893 0.91052 0.84422 0.83279 0.74585 0.92711 0.92378 0.87538 0.88029 0.77695 0.73167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.55 13.29 21.45 0.28 -53.27 16 2 C 0.00 0.25 5.46 84.65 0.46 0.72 16 3 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -29.02 9.11 25.60 0.23 -28.78 16 8 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.36 4.74 29.85 0.14 1.50 16 10 C -0.12 -4.40 4.78 30.59 0.15 -4.25 16 11 C 0.08 2.51 3.21 44.17 0.14 2.65 16 12 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 13 N -0.83 -27.99 8.94 -171.81 -1.54 -29.52 16 14 C 0.53 15.85 7.08 87.66 0.62 16.47 16 15 O -0.58 -21.73 16.25 -3.05 -0.05 -21.78 16 16 N -0.72 -14.76 5.56 -463.06 -2.57 -17.33 16 17 C 0.13 2.22 5.66 86.38 0.49 2.70 16 18 C -0.04 -0.41 5.91 29.85 0.18 -0.24 16 19 C -0.21 -2.71 5.58 -19.73 -0.11 -2.82 16 20 C -0.01 -0.15 12.16 85.71 1.04 0.89 16 21 N -0.40 -8.28 12.07 -59.25 -0.72 -9.00 16 22 O 0.08 1.44 11.20 71.65 0.80 2.24 16 23 C -0.04 -0.47 12.26 67.17 0.82 0.35 16 24 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 26 H 0.00 0.01 6.87 -2.39 -0.02 -0.01 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.34 11.86 8.58 -89.69 -0.77 11.09 16 30 H 0.35 12.01 7.55 -89.69 -0.68 11.33 16 31 H 0.42 6.22 8.47 -92.71 -0.79 5.44 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.25 0.76 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -71.18 322.88 1.28 -69.89 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -1.12 Total: 25.15 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 4.17 Total: -10.80 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -4.54 Total: -109.12 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.75 Total: -19.54 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -71.18 1.28 -69.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719315688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.879 kcal (2) G-P(sol) polarization free energy of solvation -71.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds