Wall clock time and date at job start Mon Mar 30 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31015 * 1 3 3 Si 1.86802 * 120.00075 * 2 1 4 4 H 1.48509 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47287 * 299.99810 * 3 2 1 6 6 H 1.48495 * 109.47112 * 60.00334 * 3 2 1 7 7 C 1.39592 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 180.02562 * 7 2 1 9 9 N 1.36111 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00166 * 180.02562 * 9 7 2 11 11 O 1.21501 * 119.99386 * 359.97438 * 10 9 7 12 12 C 1.48826 * 120.00380 * 179.97438 * 10 9 7 13 13 O 1.21446 * 119.99726 * 354.91326 * 12 10 9 14 14 N 1.34778 * 120.00241 * 174.63876 * 12 10 9 15 15 C 1.48560 * 121.90113 * 185.44032 * 14 12 10 16 16 C 1.52774 * 104.84456 * 111.54825 * 15 14 12 17 17 N 1.43862 * 111.78923 * 58.57836 * 16 15 14 18 18 C 1.46550 * 114.88216 * 39.59955 * 17 16 15 19 19 C 1.52284 * 110.49665 * 288.03001 * 18 17 16 20 20 C 1.46557 * 121.89523 * 5.15705 * 14 12 10 21 21 C 1.50543 * 112.44680 * 279.06230 * 20 14 12 22 22 C 1.43840 * 118.09336 * 264.60734 * 17 16 15 23 23 H 0.96997 * 119.99567 * 359.97438 * 1 2 3 24 24 H 0.97005 * 120.00569 * 359.97438 * 9 7 2 25 25 H 1.09004 * 110.35974 * 230.37325 * 15 14 12 26 26 H 1.09004 * 110.35867 * 352.71978 * 15 14 12 27 27 H 1.08999 * 109.01900 * 179.17228 * 16 15 14 28 28 H 1.09000 * 109.01406 * 297.98119 * 16 15 14 29 29 H 1.09000 * 109.25310 * 48.49916 * 18 17 16 30 30 H 1.09002 * 109.25538 * 167.93333 * 18 17 16 31 31 H 1.09003 * 109.12240 * 225.65858 * 19 18 17 32 32 H 1.08998 * 109.22538 * 106.41178 * 19 18 17 33 33 H 1.08998 * 108.72882 * 39.14843 * 20 14 12 34 34 H 1.09006 * 109.10271 * 172.91830 * 21 20 14 35 35 H 1.09004 * 108.92879 * 54.03776 * 21 20 14 36 36 H 1.08992 * 109.17829 * 202.20550 * 22 17 16 37 37 H 1.09002 * 109.17938 * 321.48656 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.7043 1.3463 -0.0006 5 1 1.8855 2.3965 -1.2125 6 1 1.8855 2.3964 1.2125 7 6 2.0081 -1.2089 -0.0005 8 1 3.0881 -1.2089 -0.0001 9 7 1.3275 -2.3876 -0.0005 10 6 2.0013 -3.5549 -0.0005 11 8 3.2163 -3.5549 -0.0010 12 6 1.2572 -4.8438 0.0000 13 8 0.0464 -4.8458 0.0938 14 7 1.9266 -6.0085 -0.1090 15 6 1.2218 -7.3104 -0.2324 16 6 1.5149 -7.7809 -1.6560 17 7 2.9276 -7.9109 -1.8952 18 6 3.6933 -8.4698 -0.7777 19 6 3.7989 -7.4579 0.3554 20 6 3.3911 -6.0619 -0.1188 21 6 3.9691 -5.7393 -1.4709 22 6 3.6154 -6.8058 -2.5074 23 1 -0.4849 0.8401 0.0004 24 1 0.3575 -2.3877 0.0002 25 1 1.6149 -8.0245 0.4914 26 1 0.1494 -7.1761 -0.0907 27 1 1.0372 -8.7474 -1.8162 28 1 1.1002 -7.0601 -2.3607 29 1 3.1959 -9.3696 -0.4156 30 1 4.6951 -8.7273 -1.1216 31 1 4.8282 -7.4284 0.7130 32 1 3.1453 -7.7641 1.1721 33 1 3.7726 -5.3376 0.6008 34 1 5.0538 -5.6707 -1.3880 35 1 3.5771 -4.7779 -1.8027 36 1 4.5309 -7.1684 -2.9746 37 1 2.9749 -6.3637 -3.2705 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722786444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:23 Heat of formation + Delta-G solvation = -63.971471 kcal Electronic energy + Delta-G solvation = -21650.994525 eV Core-core repulsion = 18427.976491 eV Total energy + Delta-G solvation = -3223.018034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.32604 -40.46057 -38.95219 -36.54799 -35.36216 -34.07552 -33.45064 -32.14394 -29.42614 -27.71589 -26.30284 -24.97501 -24.03015 -22.31794 -20.73030 -20.33709 -19.57187 -18.54880 -17.88085 -17.65836 -16.84509 -16.48241 -16.32001 -16.04526 -15.76270 -15.27965 -14.85975 -14.43552 -14.21623 -13.99052 -13.86263 -13.64453 -13.22002 -13.09735 -12.94945 -12.88646 -12.58443 -12.40450 -12.20101 -12.10453 -11.92085 -11.69191 -11.46580 -11.25781 -10.27645 -10.04028 -9.77231 -8.91081 -8.67162 -6.11688 0.57898 1.38152 1.43034 1.53444 1.67489 2.24481 2.33821 2.98263 3.01993 3.13283 3.72062 3.88461 3.92136 3.99880 4.05826 4.20508 4.28693 4.37711 4.46890 4.49978 4.63391 4.80668 4.92884 4.98799 5.02671 5.08425 5.16596 5.18188 5.24421 5.35093 5.52414 5.67793 6.12712 6.31482 6.35135 6.49239 6.74459 6.95650 7.26953 7.79278 8.49284 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.034955 B = 0.005393 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.849020 B = 5190.439806 C = 5559.741953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.007 4.007 3 Si 1.010 2.990 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.341 4.341 8 H 0.099 0.901 9 N -0.516 5.516 10 C 0.392 3.608 11 O -0.594 6.594 12 C 0.513 3.487 13 O -0.574 6.574 14 N -0.584 5.584 15 C 0.068 3.932 16 C 0.079 3.921 17 N -0.581 5.581 18 C 0.079 3.921 19 C -0.159 4.159 20 C 0.143 3.857 21 C -0.151 4.151 22 C 0.091 3.909 23 H 0.288 0.712 24 H 0.397 0.603 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -15.627 -2.095 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.211 4.211 3 Si 0.831 3.169 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.117 0.883 9 N -0.150 5.150 10 C 0.177 3.823 11 O -0.483 6.483 12 C 0.299 3.701 13 O -0.454 6.454 14 N -0.318 5.318 15 C -0.054 4.054 16 C -0.049 4.049 17 N -0.302 5.302 18 C -0.048 4.048 19 C -0.199 4.199 20 C 0.040 3.960 21 C -0.191 4.191 22 C -0.038 4.038 23 H 0.098 0.902 24 H 0.231 0.769 25 H 0.130 0.870 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.492 -15.781 -2.354 17.226 hybrid contribution -0.578 1.930 0.647 2.116 sum 5.914 -13.852 -1.707 15.158 Atomic orbital electron populations 1.69566 1.07891 1.30640 1.45685 1.26542 0.96479 1.03488 0.94542 0.84637 0.78237 0.75309 0.78687 1.18742 1.19117 1.19126 1.19973 0.93562 0.82979 1.50580 0.88333 1.41676 1.10043 1.04837 1.58474 1.19560 0.88117 0.85065 0.89604 1.90506 1.13213 1.86696 1.57893 1.20229 0.86826 0.86052 0.77037 1.90653 1.14963 1.87987 1.51839 1.48597 1.08158 1.05279 1.69757 1.23154 0.98614 0.83373 1.00213 1.21645 0.87547 1.01960 0.93788 1.56587 1.01999 1.36249 1.35356 1.21804 0.99279 0.96049 0.87638 1.22508 1.03479 0.93402 1.00473 1.20718 0.77781 0.99029 0.98469 1.21932 1.01636 0.99765 0.95765 1.21343 0.99070 0.88612 0.94762 0.90209 0.76869 0.86959 0.89682 0.87358 0.93540 0.88571 0.88943 0.88906 0.90566 0.90895 0.90009 0.94513 0.88605 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.39 13.03 21.77 0.28 -49.10 16 2 C -0.01 -0.36 5.51 85.14 0.47 0.11 16 3 Si 1.01 41.38 29.56 68.60 2.03 43.40 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.34 -19.44 9.67 84.36 0.82 -18.62 16 8 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 9 N -0.52 -29.03 5.24 -308.88 -1.62 -30.65 16 10 C 0.39 20.51 7.46 87.08 0.65 21.16 16 11 O -0.59 -31.57 11.33 -3.72 -0.04 -31.62 16 12 C 0.51 23.68 7.76 87.08 0.68 24.36 16 13 O -0.57 -28.54 16.07 -3.55 -0.06 -28.59 16 14 N -0.58 -20.86 2.57 -799.59 -2.06 -22.92 16 15 C 0.07 1.82 6.04 85.91 0.52 2.34 16 16 C 0.08 1.83 5.97 86.79 0.52 2.35 16 17 N -0.58 -12.61 4.16 -915.28 -3.81 -16.41 16 18 C 0.08 1.32 5.41 86.13 0.47 1.78 16 19 C -0.16 -3.35 5.22 30.35 0.16 -3.19 16 20 C 0.14 4.59 2.09 44.17 0.09 4.68 16 21 C -0.15 -4.73 5.17 29.75 0.15 -4.58 16 22 C 0.09 2.26 6.02 86.83 0.52 2.78 16 23 H 0.29 14.42 8.30 -92.71 -0.77 13.66 16 24 H 0.40 22.89 7.36 -92.70 -0.68 22.20 16 25 H 0.11 2.31 5.37 -2.38 -0.01 2.30 16 26 H 0.08 2.49 7.21 -2.38 -0.02 2.47 16 27 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16 29 H 0.10 1.20 7.99 -2.39 -0.02 1.18 16 30 H 0.09 1.27 8.12 -2.39 -0.02 1.25 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 1.53 6.39 -2.39 -0.02 1.52 16 33 H 0.07 2.88 6.04 -2.39 -0.01 2.87 16 34 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.04 1.49 6.48 -2.38 -0.02 1.47 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.38 7.78 -2.39 -0.02 1.36 16 Total: -1.00 -67.24 288.04 0.19 -67.05 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.42 Total: 35.68 kcal Atomic # 6 Polarization: 28.12 SS G_CDS: 5.04 Total: 33.16 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -7.20 Total: -119.08 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -0.10 Total: -60.21 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -67.24 0.19 -67.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722786444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.082 kcal (2) G-P(sol) polarization free energy of solvation -67.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds