Wall clock time and date at job start Mon Mar 30 2020 04:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99989 * 2 1 4 4 C 1.52997 * 113.25750 * 67.88212 * 3 2 1 5 5 F 1.39900 * 109.47037 * 281.96030 * 4 3 2 6 6 F 1.39903 * 109.46856 * 41.95724 * 4 3 2 7 7 F 1.39897 * 109.47395 * 161.95595 * 4 3 2 8 8 C 1.53511 * 114.17018 * 294.93027 * 3 2 1 9 9 N 1.47483 * 87.93453 * 272.37843 * 8 3 2 10 10 C 1.46898 * 111.00151 * 221.30116 * 9 8 3 11 11 C 1.53000 * 109.47238 * 169.99947 * 10 9 8 12 12 C 1.52999 * 109.47232 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47359 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00025 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00518 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99540 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00306 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46993 * 60.00457 * 17 15 13 19 19 H 1.48497 * 109.46933 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47189 * 300.00652 * 17 15 13 21 21 C 1.47480 * 87.83414 * 332.98916 * 9 8 3 22 22 H 1.09002 * 109.46724 * 300.10306 * 1 2 3 23 23 H 1.09003 * 109.47128 * 60.10293 * 1 2 3 24 24 H 1.09001 * 109.47258 * 180.10139 * 1 2 3 25 25 H 1.09006 * 113.47318 * 157.61225 * 8 3 2 26 26 H 1.09005 * 113.47943 * 27.14677 * 8 3 2 27 27 H 1.08997 * 109.47487 * 49.99497 * 10 9 8 28 28 H 1.09006 * 109.46890 * 289.99739 * 10 9 8 29 29 H 1.08995 * 109.47042 * 59.99911 * 11 10 9 30 30 H 1.08997 * 109.46942 * 299.99467 * 11 10 9 31 31 H 1.09006 * 109.47104 * 59.99882 * 12 11 10 32 32 H 1.09001 * 109.47551 * 300.00429 * 12 11 10 33 33 H 0.97002 * 119.99898 * 179.97438 * 16 15 13 34 34 H 1.09004 * 113.47660 * 141.77068 * 21 9 8 35 35 H 1.08995 * 113.47905 * 272.24583 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7725 2.0726 1.3022 5 9 0.4687 2.5798 1.3132 6 9 1.9466 1.2102 2.3899 7 9 2.6847 3.1292 1.3942 8 6 1.7266 2.1198 -1.2700 9 7 2.9240 1.5017 -1.8695 10 6 3.7004 2.4888 -2.6315 11 6 5.0488 1.8828 -3.0259 12 6 5.8572 2.9107 -3.8201 13 6 7.1855 2.3141 -4.2080 14 1 7.4287 1.3026 -3.9175 15 6 8.0901 3.0589 -4.9347 16 7 7.7937 4.2903 -5.2889 17 14 9.7363 2.3190 -5.4161 18 1 9.5113 1.1126 -6.2523 19 1 10.5209 3.3167 -6.1869 20 1 10.4856 1.9396 -4.1915 21 6 3.4597 1.3482 -0.5040 22 1 -0.3633 0.5155 0.8891 23 1 -0.3633 0.5122 -0.8909 24 1 -0.3634 -1.0277 0.0018 25 1 1.8197 3.1962 -1.1255 26 1 0.7980 1.8394 -1.7674 27 1 3.8656 3.3739 -2.0173 28 1 3.1507 2.7679 -3.5305 29 1 4.8836 0.9978 -3.6402 30 1 5.5985 1.6038 -2.1270 31 1 6.0224 3.7961 -3.2061 32 1 5.3073 3.1895 -4.7190 33 1 8.4302 4.8144 -5.7999 34 1 3.9999 0.4137 -0.3520 35 1 4.0152 2.2186 -0.1550 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724168113.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:41 Heat of formation + Delta-G solvation = -163.273874 kcal Electronic energy + Delta-G solvation = -21139.535876 eV Core-core repulsion = 17338.062275 eV Total energy + Delta-G solvation = -3801.473601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.37031 -47.91436 -47.81211 -40.79796 -37.19405 -34.13411 -32.08295 -29.68290 -27.36210 -26.85868 -26.02779 -24.44079 -22.16968 -20.46425 -20.14693 -18.78375 -18.67690 -18.31301 -16.60960 -16.11702 -15.80546 -15.29498 -14.82783 -14.78169 -14.70795 -14.53150 -14.32393 -14.16927 -14.06096 -13.93916 -13.79884 -13.32674 -12.57997 -12.35900 -12.10931 -11.96138 -11.53706 -11.28074 -10.99657 -10.81631 -10.61637 -10.52750 -10.10176 -9.73440 -9.36605 -9.08892 -8.94756 -8.34748 -6.00169 -4.02423 2.33994 2.88169 3.34221 3.34329 3.38320 3.39049 3.41354 3.72031 4.12065 4.31667 4.46222 4.67659 4.95139 4.99927 5.01502 5.13294 5.31904 5.33003 5.35923 5.44587 5.63664 5.66452 6.13883 6.27549 6.51484 6.57401 6.70878 7.07120 7.11100 7.65946 7.79481 7.99347 8.42357 9.04281 9.61754 11.11250 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.037013 B = 0.003766 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.303970 B = 7434.013205 C = 7566.017464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.319 6.319 3 C 0.032 3.968 4 C 0.439 3.561 5 F -0.182 7.182 6 F -0.174 7.174 7 F -0.173 7.173 8 C -0.015 4.015 9 N -0.450 5.450 10 C 0.017 3.983 11 C -0.104 4.104 12 C 0.022 3.978 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.024 3.976 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.014 0.986 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.110 0.890 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.195 -4.652 12.960 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C -0.012 4.012 4 C 0.384 3.616 5 F -0.164 7.164 6 F -0.155 7.155 7 F -0.155 7.155 8 C -0.144 4.144 9 N -0.172 5.172 10 C -0.110 4.110 11 C -0.142 4.142 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.104 4.104 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.122 0.878 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.062 -5.217 12.397 20.950 hybrid contribution 0.732 0.823 0.450 1.190 sum -15.330 -4.394 12.848 20.478 Atomic orbital electron populations 1.23061 0.80087 1.03990 1.01043 1.88128 1.20551 1.21120 1.93757 1.23960 1.01010 0.86959 0.89240 1.21155 0.74059 0.78605 0.87814 1.93174 1.38049 1.88234 1.96927 1.93203 1.94986 1.69599 1.57754 1.93195 1.66968 1.58723 1.96576 1.24428 0.99281 0.98453 0.92240 1.69149 1.03405 1.35495 1.09163 1.22953 0.96848 0.92922 0.98310 1.21599 0.92039 1.00375 1.00196 1.19073 0.94163 0.93556 0.94751 1.21199 1.00815 0.99666 1.34161 0.92685 1.25020 0.98544 0.94877 0.95986 1.69953 1.36009 1.08912 1.38733 0.86648 0.83808 0.78867 0.78634 1.20203 1.21307 1.20240 1.24044 0.91102 1.05344 0.89939 0.93377 0.92708 0.88260 0.89418 0.87849 0.93896 0.90233 0.92329 0.93350 0.96744 0.96529 0.92958 0.87173 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.47 101.05 1.06 1.18 16 2 O -0.32 -3.84 10.42 -35.23 -0.37 -4.21 16 3 C 0.03 0.38 1.01 -90.09 -0.09 0.29 16 4 C 0.44 5.08 2.60 37.16 0.10 5.18 16 5 F -0.18 -1.98 15.52 2.25 0.03 -1.95 16 6 F -0.17 -2.13 17.08 2.25 0.04 -2.09 16 7 F -0.17 -2.10 15.81 2.25 0.04 -2.06 16 8 C -0.01 -0.17 6.62 -7.55 -0.05 -0.22 16 9 N -0.45 -6.53 6.41 -244.61 -1.57 -8.10 16 10 C 0.02 0.29 4.82 -3.83 -0.02 0.27 16 11 C -0.10 -2.12 5.26 -26.73 -0.14 -2.26 16 12 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 13 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.02 0.32 6.29 -7.55 -0.05 0.27 16 22 H 0.05 0.40 6.55 -51.93 -0.34 0.06 16 23 H 0.05 0.43 6.71 -51.93 -0.35 0.08 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 0.95 7.72 -51.93 -0.40 0.55 16 26 H 0.10 1.06 6.73 -51.93 -0.35 0.71 16 27 H 0.04 0.68 7.56 -51.93 -0.39 0.29 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.96 7.67 -51.93 -0.40 0.57 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.10 1.29 6.54 -51.93 -0.34 0.95 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -30.38 300.38 -5.97 -36.35 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -4.65 Total: -4.58 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 0.26 Total: -8.38 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: -0.83 Total: -34.28 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.37 Total: -4.21 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.11 Total: -6.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.38 -5.97 -36.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724168113.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.921 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds