Wall clock time and date at job start Mon Mar 30 2020 04:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99989 * 2 1 4 4 C 1.52997 * 113.25750 * 67.88212 * 3 2 1 5 5 F 1.39900 * 109.47037 * 281.96030 * 4 3 2 6 6 F 1.39903 * 109.46856 * 41.95724 * 4 3 2 7 7 F 1.39897 * 109.47395 * 161.95595 * 4 3 2 8 8 C 1.53511 * 114.17018 * 294.93027 * 3 2 1 9 9 N 1.47483 * 87.93453 * 272.37843 * 8 3 2 10 10 C 1.46898 * 111.00151 * 221.30116 * 9 8 3 11 11 C 1.53000 * 109.47238 * 169.99947 * 10 9 8 12 12 C 1.52999 * 109.47232 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47359 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00025 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00518 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99540 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00306 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46993 * 60.00457 * 17 15 13 19 19 H 1.48497 * 109.46933 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47189 * 300.00652 * 17 15 13 21 21 C 1.47480 * 87.83414 * 332.98916 * 9 8 3 22 22 H 1.09002 * 109.46724 * 300.10306 * 1 2 3 23 23 H 1.09003 * 109.47128 * 60.10293 * 1 2 3 24 24 H 1.09001 * 109.47258 * 180.10139 * 1 2 3 25 25 H 1.09006 * 113.47318 * 157.61225 * 8 3 2 26 26 H 1.09005 * 113.47943 * 27.14677 * 8 3 2 27 27 H 1.08997 * 109.47487 * 49.99497 * 10 9 8 28 28 H 1.09006 * 109.46890 * 289.99739 * 10 9 8 29 29 H 1.08995 * 109.47042 * 59.99911 * 11 10 9 30 30 H 1.08997 * 109.46942 * 299.99467 * 11 10 9 31 31 H 1.09006 * 109.47104 * 59.99882 * 12 11 10 32 32 H 1.09001 * 109.47551 * 300.00429 * 12 11 10 33 33 H 0.97002 * 119.99898 * 179.97438 * 16 15 13 34 34 H 1.09004 * 113.47660 * 141.77068 * 21 9 8 35 35 H 1.08995 * 113.47905 * 272.24583 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7725 2.0726 1.3022 5 9 0.4687 2.5798 1.3132 6 9 1.9466 1.2102 2.3899 7 9 2.6847 3.1292 1.3942 8 6 1.7266 2.1198 -1.2700 9 7 2.9240 1.5017 -1.8695 10 6 3.7004 2.4888 -2.6315 11 6 5.0488 1.8828 -3.0259 12 6 5.8572 2.9107 -3.8201 13 6 7.1855 2.3141 -4.2080 14 1 7.4287 1.3026 -3.9175 15 6 8.0901 3.0589 -4.9347 16 7 7.7937 4.2903 -5.2889 17 14 9.7363 2.3190 -5.4161 18 1 9.5113 1.1126 -6.2523 19 1 10.5209 3.3167 -6.1869 20 1 10.4856 1.9396 -4.1915 21 6 3.4597 1.3482 -0.5040 22 1 -0.3633 0.5155 0.8891 23 1 -0.3633 0.5122 -0.8909 24 1 -0.3634 -1.0277 0.0018 25 1 1.8197 3.1962 -1.1255 26 1 0.7980 1.8394 -1.7674 27 1 3.8656 3.3739 -2.0173 28 1 3.1507 2.7679 -3.5305 29 1 4.8836 0.9978 -3.6402 30 1 5.5985 1.6038 -2.1270 31 1 6.0224 3.7961 -3.2061 32 1 5.3073 3.1895 -4.7190 33 1 8.4302 4.8144 -5.7999 34 1 3.9999 0.4137 -0.3520 35 1 4.0152 2.2186 -0.1550 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724168113.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:41 Heat of formation + Delta-G solvation = -184.562151 kcal Electronic energy + Delta-G solvation = -21140.459005 eV Core-core repulsion = 17338.062275 eV Total energy + Delta-G solvation = -3802.396730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.28978 -48.82865 -48.73873 -41.80907 -38.16411 -35.97446 -33.91744 -31.04568 -28.50099 -28.05783 -26.92802 -26.00011 -23.65425 -21.89841 -21.35818 -19.73224 -19.59981 -19.27243 -18.42853 -17.42683 -16.76971 -16.48454 -16.40652 -15.77802 -15.70963 -15.60639 -15.36354 -15.20862 -15.09649 -14.88771 -14.82457 -14.67392 -14.26984 -13.72797 -13.39956 -13.16307 -12.88662 -12.76200 -12.57972 -12.35222 -12.22788 -11.91989 -11.49357 -11.40203 -11.13843 -10.88981 -10.53746 -10.07350 -8.19356 -6.29991 1.40764 1.41423 1.43884 1.51845 2.01744 2.40773 2.43354 2.45048 2.75883 3.14102 3.16977 3.39254 3.63376 3.89355 4.11543 4.20964 4.26031 4.33962 4.37793 4.54203 4.58386 4.67715 4.78984 4.85620 5.00097 5.14247 5.28824 5.52005 5.70429 5.74880 5.83977 5.86560 6.26835 6.86429 7.39218 8.92234 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.037013 B = 0.003766 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.303970 B = 7434.013205 C = 7566.017464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.337 6.337 3 C 0.041 3.959 4 C 0.443 3.557 5 F -0.176 7.176 6 F -0.178 7.178 7 F -0.177 7.177 8 C -0.011 4.011 9 N -0.463 5.463 10 C 0.029 3.971 11 C -0.090 4.090 12 C 0.026 3.974 13 C -0.544 4.544 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.016 3.984 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.117 0.883 25 H 0.098 0.902 26 H 0.121 0.879 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.050 0.950 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.264 0.736 34 H 0.107 0.893 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 -5.450 13.441 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.254 6.254 3 C -0.002 4.002 4 C 0.388 3.612 5 F -0.158 7.158 6 F -0.160 7.160 7 F -0.158 7.158 8 C -0.140 4.140 9 N -0.185 5.185 10 C -0.099 4.099 11 C -0.128 4.128 12 C -0.012 4.012 13 C -0.582 4.582 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.787 3.213 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.112 4.112 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.135 0.865 25 H 0.116 0.884 26 H 0.139 0.861 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.543 -6.027 12.891 21.822 hybrid contribution 0.811 1.062 0.329 1.377 sum -15.732 -4.965 13.220 21.141 Atomic orbital electron populations 1.23295 0.78350 1.05481 1.01703 1.88109 1.22439 1.21045 1.93832 1.23747 0.99959 0.87162 0.89360 1.21070 0.74201 0.78398 0.87532 1.93187 1.37555 1.88130 1.96885 1.93196 1.95036 1.69762 1.57958 1.93190 1.67183 1.58881 1.96576 1.24511 0.98637 0.98985 0.91825 1.69098 1.04392 1.35126 1.09891 1.22687 0.95049 0.93226 0.98904 1.21329 0.93618 0.98586 0.99271 1.18972 0.94012 0.94103 0.94122 1.21662 1.02172 1.00006 1.34386 0.92393 1.25946 1.02610 0.95253 0.95846 1.70080 1.37482 1.10311 1.39422 0.85532 0.78897 0.78211 0.78616 1.19263 1.20783 1.19216 1.24098 0.92286 1.05374 0.89452 0.93022 0.91673 0.86500 0.88369 0.86131 0.93399 0.90250 0.93001 0.93096 0.98771 0.98787 0.92766 0.87452 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.47 113.37 1.19 1.29 16 2 O -0.34 -7.49 10.42 -148.98 -1.55 -9.04 16 3 C 0.04 0.91 1.01 -10.45 -0.01 0.90 16 4 C 0.44 9.51 2.60 71.98 0.19 9.69 16 5 F -0.18 -3.46 15.52 44.97 0.70 -2.76 16 6 F -0.18 -4.10 17.08 44.97 0.77 -3.33 16 7 F -0.18 -4.03 15.81 44.97 0.71 -3.32 16 8 C -0.01 -0.23 6.62 83.57 0.55 0.32 16 9 N -0.46 -12.82 6.41 -928.19 -5.95 -18.77 16 10 C 0.03 0.95 4.82 86.30 0.42 1.37 16 11 C -0.09 -3.67 5.26 30.59 0.16 -3.51 16 12 C 0.03 1.34 4.97 29.85 0.15 1.48 16 13 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 17 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 C 0.02 0.42 6.29 83.57 0.53 0.94 16 22 H 0.05 0.74 6.55 -2.39 -0.02 0.72 16 23 H 0.06 0.84 6.71 -2.39 -0.02 0.83 16 24 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.10 1.91 7.72 -2.38 -0.02 1.89 16 26 H 0.12 2.15 6.73 -2.38 -0.02 2.13 16 27 H 0.05 1.49 7.56 -2.39 -0.02 1.47 16 28 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.05 2.02 7.67 -2.39 -0.02 2.00 16 31 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.11 2.74 8.14 -2.38 -0.02 2.73 16 35 H 0.10 2.54 6.54 -2.39 -0.02 2.52 16 Total: -1.00 -64.29 300.38 1.94 -62.35 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: 1.09 Total: 2.76 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 3.86 Total: -17.86 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -5.67 Total: -75.16 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.55 Total: -9.04 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 2.18 Total: -9.42 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -64.29 1.94 -62.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724168113.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.209 kcal (2) G-P(sol) polarization free energy of solvation -64.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds