Wall clock time and date at job start Mon Mar 30 2020 04:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37851 * 125.89509 * 2 1 4 4 C 1.47106 * 127.02560 * 359.97438 * 3 2 1 5 5 O 1.21555 * 119.99988 * 0.23916 * 4 3 2 6 6 O 1.34787 * 120.00146 * 180.23744 * 4 3 2 7 7 C 1.45191 * 117.00117 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47296 * 180.02562 * 7 6 4 9 9 O 1.42897 * 109.46985 * 64.99968 * 8 7 6 10 10 C 1.42908 * 113.99752 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47029 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99993 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00226 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99692 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00216 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46974 * 89.99925 * 15 13 11 17 17 H 1.48507 * 109.47053 * 209.99764 * 15 13 11 18 18 H 1.48502 * 109.47072 * 329.99666 * 15 13 11 19 19 C 1.46741 * 105.94797 * 180.21554 * 3 2 1 20 20 C 1.34432 * 106.37652 * 359.78058 * 19 3 2 21 21 N 1.34625 * 125.89638 * 179.83708 * 2 1 3 22 22 C 1.46499 * 124.80908 * 0.02891 * 21 2 1 23 23 H 1.09003 * 109.47155 * 270.17165 * 1 2 3 24 24 H 1.09004 * 109.47423 * 30.16356 * 1 2 3 25 25 H 1.08991 * 109.47236 * 150.16425 * 1 2 3 26 26 H 1.08995 * 109.47511 * 299.99954 * 7 6 4 27 27 H 1.08998 * 109.47341 * 60.00514 * 7 6 4 28 28 H 1.09001 * 109.47249 * 185.00253 * 8 7 6 29 29 H 1.09005 * 109.46875 * 305.00427 * 8 7 6 30 30 H 1.08999 * 109.47008 * 299.99481 * 10 9 8 31 31 H 1.09003 * 109.47297 * 59.99853 * 10 9 8 32 32 H 0.97003 * 119.99692 * 180.02562 * 14 13 11 33 33 H 1.08000 * 126.81457 * 179.76011 * 19 3 2 34 34 H 1.08001 * 125.45778 * 180.02562 * 20 19 3 35 35 H 1.09002 * 109.47391 * 269.72542 * 22 21 2 36 36 H 1.09001 * 109.46813 * 149.72599 * 22 21 2 37 37 H 1.09004 * 109.47041 * 29.72726 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8832 2.5229 -0.0005 5 8 0.6984 2.7947 0.0034 6 8 2.8010 3.5100 -0.0053 7 6 2.3026 4.8736 -0.0049 8 6 3.4823 5.8479 -0.0114 9 8 4.2068 5.7106 -1.2354 10 6 5.3354 6.5804 -1.3434 11 6 6.0208 6.3521 -2.6660 12 1 5.6334 5.6161 -3.3550 13 6 7.1422 7.0829 -2.9966 14 7 7.6136 7.9795 -2.1578 15 14 7.9921 6.7994 -4.6357 16 1 7.4066 7.7018 -5.6595 17 1 9.4430 7.0839 -4.4967 18 1 7.8024 5.3871 -5.0539 19 6 3.6946 0.6161 -0.0053 20 6 3.6109 -0.7256 -0.0031 21 7 2.2963 -1.0906 0.0031 22 6 1.8123 -2.4733 0.0064 23 1 -0.3633 0.0031 1.0277 24 1 -0.3634 0.8885 -0.5164 25 1 -0.3633 -0.8914 -0.5112 26 1 1.6917 5.0375 -0.8927 27 1 1.6988 5.0396 0.8873 28 1 3.1109 6.8688 0.0785 29 1 4.1414 5.6258 0.8279 30 1 5.0029 7.6166 -1.2811 31 1 6.0329 6.3732 -0.5318 32 1 8.4024 8.4939 -2.3905 33 1 4.5979 1.2081 -0.0104 34 1 4.4499 -1.4057 -0.0054 35 1 1.6964 -2.8152 1.0349 36 1 2.5301 -3.1107 -0.5098 37 1 0.8501 -2.5226 -0.5035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815244207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:43 Heat of formation + Delta-G solvation = -89.996787 kcal Electronic energy + Delta-G solvation = -19582.679422 eV Core-core repulsion = 16326.240094 eV Total energy + Delta-G solvation = -3256.439328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.43102 -39.59876 -36.86910 -35.72950 -33.05272 -32.69605 -31.75857 -30.02425 -27.29899 -26.68829 -26.46012 -23.15800 -22.30174 -21.68891 -20.45988 -18.96827 -17.60101 -16.64557 -16.33582 -16.30180 -15.78134 -15.45521 -15.08811 -14.52375 -14.29105 -14.02576 -13.43087 -13.39079 -13.19391 -12.90436 -12.66381 -12.61993 -12.38465 -12.21828 -11.88433 -11.61431 -11.31586 -10.84130 -10.78763 -10.65852 -10.17894 -10.14410 -9.96241 -9.06589 -8.80474 -8.74175 -8.27902 -8.14274 -6.07006 -4.08197 1.52770 2.34252 2.51233 3.24660 3.33825 3.38425 3.44614 3.46641 4.38032 4.41077 4.53611 4.72464 4.79596 4.84529 4.94548 5.06481 5.27243 5.29538 5.38187 5.40554 5.50790 5.61262 5.80845 5.91168 5.97548 5.99591 6.12180 6.28104 6.65973 6.83457 6.95349 7.05824 7.12695 7.46663 7.83927 8.18614 8.21718 8.60455 9.05149 9.56388 11.04657 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.003672 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.049873 B = 7622.662928 C = 8462.173696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.108 3.892 3 C -0.224 4.224 4 C 0.540 3.460 5 O -0.533 6.533 6 O -0.335 6.335 7 C 0.076 3.924 8 C 0.062 3.938 9 O -0.390 6.390 10 C 0.194 3.806 11 C -0.513 4.513 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.900 5.900 15 Si 0.908 3.092 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.134 4.134 20 C -0.031 4.031 21 N -0.443 5.443 22 C 0.068 3.932 23 H 0.078 0.922 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.264 0.736 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 -19.766 7.101 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.009 4.009 3 C -0.233 4.233 4 C 0.388 3.612 5 O -0.425 6.425 6 O -0.251 6.251 7 C 0.002 3.998 8 C -0.015 4.015 9 O -0.310 6.310 10 C 0.120 3.880 11 C -0.551 4.551 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.735 3.265 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.157 4.157 20 C -0.155 4.155 21 N -0.119 5.119 22 C -0.074 4.074 23 H 0.097 0.903 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.174 0.826 34 H 0.187 0.813 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.560 -19.995 6.976 24.622 hybrid contribution 0.674 0.238 -0.561 0.908 sum -11.887 -19.757 6.415 23.933 Atomic orbital electron populations 1.20581 0.86924 1.04190 1.03433 1.20516 0.93570 0.85056 1.01808 1.19432 0.93900 0.88898 1.21023 1.20076 0.83550 0.85605 0.71996 1.90754 1.18265 1.84874 1.48649 1.86665 1.38837 1.16071 1.83506 1.23145 0.96696 0.77603 1.02329 1.22319 0.92997 0.95865 0.90359 1.87928 1.44242 1.64095 1.34717 1.20227 0.82160 0.88174 0.97455 1.21070 1.10652 1.21496 1.01907 0.91491 1.24947 0.96779 0.94956 0.97848 1.69971 1.23924 1.24052 1.35968 0.86332 0.78320 0.78783 0.83035 1.20491 1.21096 1.19591 1.22229 0.96285 0.93150 1.04040 1.21735 0.85131 0.96378 1.12295 1.43507 1.06191 1.06010 1.56240 1.22109 1.01775 0.79942 1.03547 0.90332 0.88103 0.91716 0.90671 0.90616 0.92094 0.93263 0.97669 0.97509 0.92692 0.82605 0.81323 0.90589 0.89428 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.53 36.01 0.34 -0.57 16 2 C 0.11 1.32 6.93 -81.51 -0.56 0.76 16 3 C -0.22 -3.45 6.33 -103.01 -0.65 -4.11 16 4 C 0.54 9.58 7.95 34.33 0.27 9.85 16 5 O -0.53 -9.74 14.67 -19.31 -0.28 -10.02 16 6 O -0.34 -6.39 10.09 -43.51 -0.44 -6.83 16 7 C 0.08 1.33 5.85 37.16 0.22 1.55 16 8 C 0.06 1.21 6.33 37.16 0.24 1.45 16 9 O -0.39 -9.90 10.30 -38.80 -0.40 -10.30 16 10 C 0.19 5.47 5.69 36.01 0.20 5.67 16 11 C -0.51 -15.51 9.43 -34.44 -0.32 -15.83 16 12 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 15 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.13 -1.85 11.00 -37.49 -0.41 -2.27 16 20 C -0.03 -0.33 11.32 -16.85 -0.19 -0.52 16 21 N -0.44 -4.35 3.08 -119.60 -0.37 -4.72 16 22 C 0.07 0.33 10.82 59.85 0.65 0.98 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.10 1.19 6.53 -51.93 -0.34 0.85 16 25 H 0.06 0.44 6.92 -51.93 -0.36 0.08 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 37 H 0.09 0.32 6.87 -51.93 -0.36 -0.04 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -35.77 324.75 -6.45 -42.22 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -5.25 Total: -4.39 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.32 Total: -1.49 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.37 Total: -31.27 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -1.12 Total: -27.15 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.77 -6.45 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815244207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.780 kcal (2) G-P(sol) polarization free energy of solvation -35.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds