Wall clock time and date at job start Mon Mar 30 2020 04:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34512 * 125.79023 * 2 1 4 4 C 1.41379 * 106.84187 * 179.75386 * 3 2 1 5 5 C 1.34519 * 106.84174 * 0.36736 * 4 3 2 6 6 C 1.50701 * 125.79135 * 179.88959 * 5 4 3 7 7 H 1.09007 * 109.46793 * 339.71678 * 6 5 4 8 8 O 1.42895 * 109.47343 * 219.72155 * 6 5 4 9 9 C 1.52999 * 109.47142 * 99.71962 * 6 5 4 10 10 N 1.46497 * 109.46992 * 185.00037 * 9 6 5 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 6 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 15 15 C 1.52998 * 109.47092 * 300.27576 * 13 11 10 16 16 C 1.50703 * 109.47148 * 180.28037 * 13 11 10 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00214 * 179.97438 * 16 13 11 19 19 N 1.31520 * 119.99609 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 120.00201 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47136 * 90.00100 * 20 18 16 22 22 H 1.48500 * 109.46954 * 210.00202 * 20 18 16 23 23 H 1.48503 * 109.47010 * 330.00034 * 20 18 16 24 24 O 1.34306 * 125.78791 * 179.97438 * 2 1 3 25 25 H 1.09009 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47246 * 299.99851 * 1 2 3 27 27 H 1.08997 * 109.47382 * 60.00284 * 1 2 3 28 28 H 1.07994 * 126.57978 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.58421 * 180.23413 * 4 3 2 30 30 H 0.96701 * 113.99770 * 300.00216 * 8 6 5 31 31 H 1.08995 * 109.46838 * 64.99924 * 9 6 5 32 32 H 1.09001 * 109.46617 * 305.00260 * 9 6 5 33 33 H 0.97000 * 120.00580 * 0.02562 * 10 9 6 34 34 H 1.09005 * 109.47323 * 180.02562 * 15 13 11 35 35 H 1.09006 * 109.47458 * 299.99989 * 15 13 11 36 36 H 1.09004 * 109.47239 * 60.00118 * 15 13 11 37 37 H 0.97006 * 119.99301 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 0.0058 5 6 3.5814 -0.7122 0.0008 6 6 4.7706 -1.6379 0.0017 7 1 5.6507 -1.0991 -0.3494 8 8 4.5131 -2.7451 -0.8642 9 6 5.0183 -2.1485 1.4226 10 7 6.2430 -2.9520 1.4462 11 6 6.6620 -3.5079 2.6002 12 8 6.0250 -3.3435 3.6191 13 6 7.9186 -4.3396 2.6232 14 1 8.7643 -3.7290 2.3072 15 6 7.7621 -5.5264 1.6705 16 6 8.1598 -4.8466 4.0218 17 1 7.4723 -4.5917 4.8147 18 6 9.2583 -5.6359 4.2890 19 7 10.0958 -5.9458 3.3235 20 14 9.5577 -6.2637 6.0227 21 1 8.8836 -7.5752 6.1975 22 1 11.0171 -6.4236 6.2460 23 1 9.0106 -5.2913 7.0027 24 8 2.2924 -1.0895 0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.9665 2.1203 -0.0004 29 1 4.5212 1.2433 0.0109 30 1 3.7420 -3.2710 -0.6115 31 1 4.1751 -2.7618 1.7403 32 1 5.1265 -1.3010 2.0994 33 1 6.7528 -3.0833 0.6314 34 1 8.6708 -6.1283 1.6874 35 1 6.9164 -6.1372 1.9866 36 1 7.5876 -5.1598 0.6589 37 1 10.8685 -6.5014 3.5115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830272218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:15 Heat of formation + Delta-G solvation = -84.241791 kcal Electronic energy + Delta-G solvation = -19916.388373 eV Core-core repulsion = 16660.198600 eV Total energy + Delta-G solvation = -3256.189772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.82749 -38.98508 -37.41541 -33.85462 -33.68596 -33.37211 -32.39199 -30.61555 -29.16844 -26.10151 -25.09430 -23.21990 -22.05833 -21.92675 -20.45765 -19.37500 -17.87726 -16.71722 -16.22003 -16.13134 -15.75163 -15.47530 -14.88889 -14.43588 -14.17775 -14.01347 -13.45604 -13.36159 -13.23741 -13.02465 -12.84776 -12.61407 -12.19055 -12.03549 -11.69061 -11.42720 -10.99990 -10.69997 -10.66392 -10.52638 -10.23168 -10.07191 -9.93583 -8.94679 -8.66421 -8.49068 -8.47501 -8.29623 -6.00785 -4.03914 1.44731 2.37407 2.58823 3.35466 3.40983 3.47878 3.72860 3.81810 4.17532 4.41280 4.51347 4.61918 4.75985 4.81894 4.92554 5.12780 5.13307 5.32438 5.36964 5.57767 5.66079 5.75996 5.86651 5.90352 6.28485 6.30838 6.67128 6.87397 6.91448 6.95599 7.03007 7.35346 7.50778 7.79073 8.01065 8.17172 8.46313 9.05070 9.24309 9.61554 11.06809 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.041164 B = 0.003489 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.047032 B = 8022.398751 C = 8297.908407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.213 4.213 4 C -0.193 4.193 5 C -0.043 4.043 6 C 0.186 3.814 7 H 0.133 0.867 8 O -0.547 6.547 9 C 0.092 3.908 10 N -0.742 5.742 11 C 0.520 3.480 12 O -0.547 6.547 13 C 0.030 3.970 14 H 0.053 0.947 15 C -0.132 4.132 16 C -0.501 4.501 17 H 0.074 0.926 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 O -0.170 6.170 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.384 0.616 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.400 0.600 34 H 0.093 0.907 35 H 0.030 0.970 36 H 0.014 0.986 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.837 11.691 -10.629 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.233 4.233 4 C -0.212 4.212 5 C -0.094 4.094 6 C 0.126 3.874 7 H 0.150 0.850 8 O -0.352 6.352 9 C -0.033 4.033 10 N -0.397 5.397 11 C 0.310 3.690 12 O -0.423 6.423 13 C 0.009 3.991 14 H 0.071 0.929 15 C -0.190 4.190 16 C -0.540 4.540 17 H 0.092 0.908 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.728 3.272 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 O -0.067 6.067 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.166 0.834 29 H 0.169 0.831 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.111 0.889 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.710 11.631 -10.187 21.341 hybrid contribution -0.008 -0.245 0.788 0.826 sum -14.718 11.385 -9.398 20.846 Atomic orbital electron populations 1.20315 0.85047 1.04135 1.03547 1.22494 0.94052 0.84145 1.05517 1.21551 0.92611 0.99479 1.09609 1.21603 0.98499 0.93630 1.07507 1.23119 0.83493 0.95345 1.07451 1.20734 0.91162 0.84852 0.90685 0.84981 1.86586 1.52894 1.41997 1.53734 1.21852 0.89828 0.96497 0.95126 1.46184 1.26296 1.54472 1.12782 1.22033 0.87683 0.77993 0.81334 1.90534 1.57713 1.60550 1.33483 1.18871 0.89034 0.92816 0.98373 0.92946 1.21744 1.03163 0.99697 0.94434 1.21157 1.09085 1.30335 0.93379 0.90819 1.24953 0.95757 0.96124 0.97442 1.69881 1.14053 1.38059 1.31633 0.86451 0.76991 0.79207 0.84554 1.20683 1.21301 1.19760 1.83924 1.16063 1.35206 1.71477 0.90502 0.89603 0.89686 0.83380 0.83146 0.76791 0.91477 0.90814 0.76493 0.88859 0.95066 0.96698 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.42 36.00 0.38 -0.10 16 2 C -0.01 -0.12 7.32 -35.63 -0.26 -0.38 16 3 C -0.21 -2.18 10.81 -39.70 -0.43 -2.61 16 4 C -0.19 -2.14 10.80 -39.70 -0.43 -2.57 16 5 C -0.04 -0.52 6.18 -35.62 -0.22 -0.74 16 6 C 0.19 2.18 3.47 -27.88 -0.10 2.08 16 7 H 0.13 1.36 8.13 -51.92 -0.42 0.94 16 8 O -0.55 -6.60 13.27 -37.35 -0.50 -7.10 16 9 C 0.09 1.36 5.29 -4.04 -0.02 1.34 16 10 N -0.74 -12.92 5.39 -60.30 -0.33 -13.25 16 11 C 0.52 11.98 7.15 -10.98 -0.08 11.90 16 12 O -0.55 -14.50 15.46 5.55 0.09 -14.41 16 13 C 0.03 0.76 2.64 -92.92 -0.25 0.51 16 14 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -3.08 8.86 37.16 0.33 -2.75 16 16 C -0.50 -14.40 8.37 -34.44 -0.29 -14.69 16 17 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.90 -25.39 11.32 55.43 0.63 -24.77 16 20 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 O -0.17 -2.09 10.58 3.58 0.04 -2.05 16 25 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.38 3.81 8.97 45.56 0.41 4.22 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.40 6.18 7.88 -40.82 -0.32 5.86 16 34 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.01 0.28 7.56 -51.93 -0.39 -0.11 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -33.48 320.29 -6.06 -39.54 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.34 Total: 6.69 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.46 Total: -6.49 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.30 Total: -38.01 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.37 Total: -23.55 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.48 -6.06 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830272218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.700 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds