Wall clock time and date at job start Mon Mar 30 2020 04:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34512 * 125.79023 * 2 1 4 4 C 1.41379 * 106.84187 * 179.75386 * 3 2 1 5 5 C 1.34519 * 106.84174 * 0.36736 * 4 3 2 6 6 C 1.50701 * 125.79135 * 179.88959 * 5 4 3 7 7 H 1.09007 * 109.46793 * 339.71678 * 6 5 4 8 8 O 1.42895 * 109.47343 * 219.72155 * 6 5 4 9 9 C 1.52999 * 109.47142 * 99.71962 * 6 5 4 10 10 N 1.46497 * 109.46992 * 185.00037 * 9 6 5 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 6 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 15 15 C 1.52998 * 109.47092 * 300.27576 * 13 11 10 16 16 C 1.50703 * 109.47148 * 180.28037 * 13 11 10 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00214 * 179.97438 * 16 13 11 19 19 N 1.31520 * 119.99609 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 120.00201 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47136 * 90.00100 * 20 18 16 22 22 H 1.48500 * 109.46954 * 210.00202 * 20 18 16 23 23 H 1.48503 * 109.47010 * 330.00034 * 20 18 16 24 24 O 1.34306 * 125.78791 * 179.97438 * 2 1 3 25 25 H 1.09009 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47246 * 299.99851 * 1 2 3 27 27 H 1.08997 * 109.47382 * 60.00284 * 1 2 3 28 28 H 1.07994 * 126.57978 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.58421 * 180.23413 * 4 3 2 30 30 H 0.96701 * 113.99770 * 300.00216 * 8 6 5 31 31 H 1.08995 * 109.46838 * 64.99924 * 9 6 5 32 32 H 1.09001 * 109.46617 * 305.00260 * 9 6 5 33 33 H 0.97000 * 120.00580 * 0.02562 * 10 9 6 34 34 H 1.09005 * 109.47323 * 180.02562 * 15 13 11 35 35 H 1.09006 * 109.47458 * 299.99989 * 15 13 11 36 36 H 1.09004 * 109.47239 * 60.00118 * 15 13 11 37 37 H 0.97006 * 119.99301 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 0.0058 5 6 3.5814 -0.7122 0.0008 6 6 4.7706 -1.6379 0.0017 7 1 5.6507 -1.0991 -0.3494 8 8 4.5131 -2.7451 -0.8642 9 6 5.0183 -2.1485 1.4226 10 7 6.2430 -2.9520 1.4462 11 6 6.6620 -3.5079 2.6002 12 8 6.0250 -3.3435 3.6191 13 6 7.9186 -4.3396 2.6232 14 1 8.7643 -3.7290 2.3072 15 6 7.7621 -5.5264 1.6705 16 6 8.1598 -4.8466 4.0218 17 1 7.4723 -4.5917 4.8147 18 6 9.2583 -5.6359 4.2890 19 7 10.0958 -5.9458 3.3235 20 14 9.5577 -6.2637 6.0227 21 1 8.8836 -7.5752 6.1975 22 1 11.0171 -6.4236 6.2460 23 1 9.0106 -5.2913 7.0027 24 8 2.2924 -1.0895 0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.9665 2.1203 -0.0004 29 1 4.5212 1.2433 0.0109 30 1 3.7420 -3.2710 -0.6115 31 1 4.1751 -2.7618 1.7403 32 1 5.1265 -1.3010 2.0994 33 1 6.7528 -3.0833 0.6314 34 1 8.6708 -6.1283 1.6874 35 1 6.9164 -6.1372 1.9866 36 1 7.5876 -5.1598 0.6589 37 1 10.8685 -6.5014 3.5115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830272218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:15 Heat of formation + Delta-G solvation = -109.212817 kcal Electronic energy + Delta-G solvation = -19917.471198 eV Core-core repulsion = 16660.198600 eV Total energy + Delta-G solvation = -3257.272597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.64133 -40.66363 -38.56920 -35.78240 -35.28601 -34.18945 -33.22473 -32.49813 -30.25724 -27.27508 -27.02564 -24.59429 -23.42890 -22.86376 -21.42435 -20.95242 -18.88539 -18.33086 -18.03051 -17.20030 -16.95788 -16.65203 -16.54014 -15.93259 -15.65883 -15.27728 -14.66669 -14.55924 -14.13599 -14.03297 -13.79976 -13.77540 -13.61746 -13.27548 -12.96840 -12.80082 -12.69357 -12.63301 -12.56270 -12.20052 -12.02215 -11.53177 -11.03714 -10.88370 -10.62293 -10.34079 -10.05481 -9.30703 -8.14944 -6.25554 0.61877 1.41022 1.41504 1.53355 1.57793 1.78952 1.89845 2.35610 2.52614 3.14490 3.26040 3.52584 3.65589 3.89905 4.05301 4.09453 4.33084 4.48538 4.62622 4.70663 4.71541 4.76649 4.82151 4.84021 4.96816 5.03549 5.04628 5.20708 5.49276 5.50366 5.58280 5.75054 5.94263 6.11092 6.21498 6.49237 6.71580 6.85287 7.39291 7.51500 8.90866 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.041164 B = 0.003489 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.047032 B = 8022.398751 C = 8297.908407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 C -0.227 4.227 4 C -0.196 4.196 5 C -0.068 4.068 6 C 0.202 3.798 7 H 0.151 0.849 8 O -0.554 6.554 9 C 0.095 3.905 10 N -0.719 5.719 11 C 0.522 3.478 12 O -0.589 6.589 13 C 0.025 3.975 14 H 0.044 0.956 15 C -0.119 4.119 16 C -0.531 4.531 17 H 0.048 0.952 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.956 3.044 21 H -0.274 1.274 22 H -0.274 1.274 23 H -0.279 1.279 24 O -0.188 6.188 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.171 0.829 29 H 0.167 0.833 30 H 0.392 0.608 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.413 0.587 34 H 0.071 0.929 35 H 0.021 0.979 36 H 0.052 0.948 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.513 12.454 -11.595 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 C -0.246 4.246 4 C -0.215 4.215 5 C -0.118 4.118 6 C 0.142 3.858 7 H 0.168 0.832 8 O -0.360 6.360 9 C -0.030 4.030 10 N -0.373 5.373 11 C 0.311 3.689 12 O -0.468 6.468 13 C 0.004 3.996 14 H 0.062 0.938 15 C -0.177 4.177 16 C -0.570 4.570 17 H 0.066 0.934 18 C -0.180 4.180 19 N -0.550 5.550 20 Si 0.781 3.219 21 H -0.200 1.200 22 H -0.199 1.199 23 H -0.204 1.204 24 O -0.085 6.085 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.188 0.812 29 H 0.185 0.815 30 H 0.241 0.759 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.250 0.750 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.387 12.401 -11.214 22.722 hybrid contribution 0.140 -0.423 1.040 1.131 sum -15.247 11.979 -10.175 21.897 Atomic orbital electron populations 1.20509 0.82505 1.04819 1.05192 1.23306 0.95638 0.83779 1.04246 1.21917 0.92281 1.00663 1.09732 1.21969 0.99681 0.93549 1.06289 1.23110 0.83548 0.95724 1.09456 1.20573 0.92083 0.84793 0.88331 0.83193 1.86563 1.53485 1.42264 1.53736 1.21968 0.87827 0.95592 0.97578 1.45839 1.26847 1.53077 1.11507 1.21593 0.87008 0.78135 0.82178 1.90512 1.58776 1.62267 1.35275 1.18808 0.89935 0.93705 0.97182 0.93841 1.21561 1.01585 0.98529 0.96067 1.21304 1.09366 1.31618 0.94673 0.93387 1.25602 0.95389 0.96036 1.00935 1.69955 1.14134 1.37979 1.32935 0.85590 0.77440 0.78555 0.80266 1.19980 1.19895 1.20375 1.83912 1.16396 1.36307 1.71908 0.90320 0.88127 0.87710 0.81175 0.81539 0.75853 0.92478 0.91330 0.74968 0.91046 0.95941 0.92884 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.42 71.23 0.74 -0.05 16 2 C -0.02 -0.38 7.32 24.83 0.18 -0.20 16 3 C -0.23 -4.21 10.81 22.19 0.24 -3.97 16 4 C -0.20 -4.01 10.80 22.19 0.24 -3.77 16 5 C -0.07 -1.55 6.18 24.83 0.15 -1.40 16 6 C 0.20 4.43 3.47 29.85 0.10 4.54 16 7 H 0.15 2.73 8.13 -2.38 -0.02 2.71 16 8 O -0.55 -12.45 13.27 -146.96 -1.95 -14.40 16 9 C 0.09 2.73 5.29 86.38 0.46 3.19 16 10 N -0.72 -24.38 5.39 -463.07 -2.50 -26.88 16 11 C 0.52 24.20 7.15 87.66 0.63 24.82 16 12 O -0.59 -31.91 15.46 -3.04 -0.05 -31.96 16 13 C 0.02 1.26 2.64 -12.29 -0.03 1.23 16 14 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.12 -5.50 8.86 71.98 0.64 -4.87 16 16 C -0.53 -31.17 8.37 25.60 0.21 -30.95 16 17 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 18 C 0.02 1.10 5.30 84.65 0.45 1.55 16 19 N -0.91 -51.47 11.32 21.45 0.24 -51.23 16 20 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 O -0.19 -4.43 10.58 -0.53 -0.01 -4.44 16 25 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.39 7.33 8.97 -74.06 -0.66 6.66 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.41 11.98 7.88 -92.71 -0.73 11.25 16 34 H 0.07 3.63 6.07 -2.38 -0.01 3.62 16 35 H 0.02 1.02 8.14 -2.38 -0.02 1.01 16 36 H 0.05 1.98 7.56 -2.38 -0.02 1.96 16 37 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -72.33 320.29 1.48 -70.85 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -0.30 Total: 20.60 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 4.01 Total: -9.86 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -2.25 Total: -78.11 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -2.00 Total: -50.79 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.33 1.48 -70.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830272218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.366 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds