Wall clock time and date at job start Mon Mar 30 2020 04:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34513 * 125.78745 * 2 1 4 4 C 1.41381 * 106.84071 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.84022 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.78896 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47103 * 25.00112 * 6 5 4 8 8 O 1.42900 * 109.47377 * 145.00246 * 6 5 4 9 9 C 1.52996 * 109.47232 * 265.00469 * 6 5 4 10 10 N 1.46500 * 109.47364 * 179.97438 * 9 6 5 11 11 C 1.34777 * 119.99750 * 179.97438 * 10 9 6 12 12 O 1.21275 * 120.00643 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.99487 * 180.02562 * 11 10 9 14 14 H 1.08996 * 109.46993 * 299.99601 * 13 11 10 15 15 C 1.52997 * 109.47141 * 60.00428 * 13 11 10 16 16 C 1.50706 * 109.46685 * 180.02562 * 13 11 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 13 11 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47474 * 90.00322 * 20 18 16 22 22 H 1.48510 * 109.47116 * 210.00055 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99887 * 20 18 16 24 24 O 1.34296 * 125.79393 * 180.35335 * 2 1 3 25 25 H 1.09001 * 109.46946 * 90.00182 * 1 2 3 26 26 H 1.08998 * 109.46561 * 209.99776 * 1 2 3 27 27 H 1.08993 * 109.47101 * 329.99567 * 1 2 3 28 28 H 1.08010 * 126.58132 * 0.02562 * 3 2 1 29 29 H 1.08003 * 126.57782 * 180.02562 * 4 3 2 30 30 H 0.96697 * 113.99983 * 59.99308 * 8 6 5 31 31 H 1.09004 * 109.47694 * 59.99739 * 9 6 5 32 32 H 1.09004 * 109.46785 * 299.99838 * 9 6 5 33 33 H 0.96996 * 119.99986 * 359.97438 * 10 9 6 34 34 H 1.09002 * 109.47153 * 299.99670 * 15 13 11 35 35 H 1.09001 * 109.46832 * 179.97438 * 15 13 11 36 36 H 1.09004 * 109.47261 * 59.99842 * 15 13 11 37 37 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6377 -0.0003 7 1 5.6295 -1.1258 0.4339 8 8 4.4687 -2.8011 0.7727 9 6 5.0959 -2.0504 -1.4372 10 7 6.2523 -2.9497 -1.4372 11 6 6.7213 -3.4443 -2.5999 12 8 6.1863 -3.1446 -3.6462 13 6 7.9106 -4.3700 -2.5998 14 1 8.7695 -3.8579 -2.1660 15 6 7.5875 -5.6154 -1.7719 16 6 8.2310 -4.7763 -4.0152 17 1 7.6330 -4.4020 -4.8330 18 6 9.2876 -5.6258 -4.2661 19 7 10.0155 -6.0819 -3.2703 20 14 9.6851 -6.1288 -6.0206 21 1 10.6468 -5.1612 -6.6073 22 1 10.2863 -7.4868 -6.0221 23 1 8.4384 -6.1385 -6.8274 24 8 2.2925 -1.0893 -0.0067 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9665 2.1205 0.0004 29 1 4.5212 1.2435 -0.0004 30 1 3.7134 -3.3070 0.4433 31 1 5.3262 -1.1630 -2.0269 32 1 4.2370 -2.5623 -1.8714 33 1 6.6805 -3.1892 -0.6004 34 1 7.3560 -5.3212 -0.7482 35 1 8.4476 -6.2850 -1.7722 36 1 6.7286 -6.1274 -2.2059 37 1 10.7586 -6.6798 -3.4468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830272221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:23 Heat of formation + Delta-G solvation = -84.300661 kcal Electronic energy + Delta-G solvation = -19924.762679 eV Core-core repulsion = 16668.570354 eV Total energy + Delta-G solvation = -3256.192325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.82849 -38.98973 -37.41272 -33.84485 -33.68291 -33.36605 -32.40065 -30.61420 -29.17632 -26.09214 -25.09502 -23.22671 -22.03827 -21.92916 -20.45508 -19.37419 -17.88002 -16.71911 -16.21450 -16.12823 -15.75908 -15.47485 -14.90064 -14.42653 -14.18915 -13.99130 -13.44664 -13.40875 -13.20587 -13.02433 -12.85553 -12.61187 -12.18483 -12.03588 -11.67598 -11.42271 -10.98506 -10.71419 -10.67599 -10.53995 -10.21227 -10.07162 -9.93657 -8.94792 -8.66314 -8.48145 -8.47832 -8.29693 -6.00746 -4.03886 1.45108 2.37653 2.57827 3.35405 3.40934 3.48028 3.73202 3.82365 4.16830 4.41623 4.51555 4.62925 4.74593 4.82499 4.92048 5.13039 5.14501 5.32503 5.37177 5.57382 5.66326 5.75764 5.86836 5.90031 6.28612 6.30925 6.67247 6.87473 6.91022 6.95695 7.03158 7.36015 7.50827 7.79229 8.01189 8.17370 8.46616 9.05131 9.24455 9.61591 11.06879 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.041600 B = 0.003487 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.907513 B = 8028.997253 C = 8286.841167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.213 4.213 4 C -0.194 4.194 5 C -0.042 4.042 6 C 0.185 3.815 7 H 0.132 0.868 8 O -0.546 6.546 9 C 0.092 3.908 10 N -0.742 5.742 11 C 0.520 3.480 12 O -0.547 6.547 13 C 0.030 3.970 14 H 0.053 0.947 15 C -0.132 4.132 16 C -0.501 4.501 17 H 0.074 0.926 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 O -0.170 6.170 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.384 0.616 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.014 0.986 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 11.539 10.558 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.232 4.232 4 C -0.214 4.214 5 C -0.093 4.093 6 C 0.126 3.874 7 H 0.150 0.850 8 O -0.352 6.352 9 C -0.033 4.033 10 N -0.397 5.397 11 C 0.310 3.690 12 O -0.423 6.423 13 C 0.009 3.991 14 H 0.070 0.930 15 C -0.190 4.190 16 C -0.540 4.540 17 H 0.092 0.908 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.728 3.272 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 O -0.067 6.067 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.166 0.834 29 H 0.169 0.831 30 H 0.232 0.768 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.236 0.764 34 H 0.033 0.967 35 H 0.111 0.889 36 H 0.049 0.951 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.832 11.536 10.143 21.352 hybrid contribution 0.030 -0.190 -0.836 0.858 sum -14.801 11.346 9.307 20.843 Atomic orbital electron populations 1.20312 0.85040 1.04025 1.03626 1.22495 0.94050 0.84155 1.05566 1.21570 0.92611 0.99442 1.09565 1.21597 0.98507 0.93640 1.07618 1.23117 0.83521 0.95331 1.07369 1.20737 0.90736 0.83856 0.92114 0.85024 1.86577 1.54738 1.38593 1.55281 1.21843 0.91060 0.95540 0.94875 1.46175 1.32534 1.50353 1.10655 1.22034 0.85547 0.79677 0.81783 1.90532 1.60074 1.59765 1.31920 1.18871 0.89854 0.91531 0.98831 0.92951 1.21740 1.02400 1.00128 0.94769 1.21159 1.13636 1.27616 0.91556 0.90818 1.24952 0.95918 0.95956 0.97441 1.69874 1.19380 1.33825 1.30543 0.86454 0.78551 0.77564 0.84646 1.20681 1.21297 1.19769 1.83908 1.16032 1.35197 1.71515 0.89989 0.90495 0.89368 0.83388 0.83141 0.76755 0.90772 0.91546 0.76421 0.96681 0.88867 0.95067 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.42 36.01 0.38 -0.10 16 2 C -0.01 -0.13 7.32 -35.62 -0.26 -0.39 16 3 C -0.21 -2.18 10.81 -39.70 -0.43 -2.61 16 4 C -0.19 -2.15 10.81 -39.70 -0.43 -2.58 16 5 C -0.04 -0.51 6.20 -35.63 -0.22 -0.73 16 6 C 0.19 2.17 3.51 -27.89 -0.10 2.07 16 7 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 8 O -0.55 -6.59 13.06 -39.83 -0.52 -7.12 16 9 C 0.09 1.35 5.32 -4.04 -0.02 1.33 16 10 N -0.74 -12.90 5.34 -60.29 -0.32 -13.23 16 11 C 0.52 11.97 7.15 -10.98 -0.08 11.89 16 12 O -0.55 -14.48 15.46 5.56 0.09 -14.40 16 13 C 0.03 0.76 2.64 -92.92 -0.25 0.51 16 14 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -3.08 8.87 37.16 0.33 -2.75 16 16 C -0.50 -14.40 8.37 -34.44 -0.29 -14.69 16 17 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.90 -25.39 11.32 55.43 0.63 -24.77 16 20 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 O -0.17 -2.09 10.52 1.14 0.01 -2.07 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.38 3.86 8.93 45.56 0.41 4.26 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.40 6.22 7.77 -40.82 -0.32 5.90 16 34 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 35 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -33.42 319.93 -6.11 -39.53 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.34 Total: 6.74 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.46 Total: -6.50 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.31 Total: -37.99 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.42 Total: -23.59 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.42 -6.11 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830272221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.771 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds